© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2824 |
| Gene name | |
| Location | Contig_193:25105..25860 |
| Strand | - |
| Gene length (bp) | 755 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 579 |
| Protein length (aa) | 193 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04062 | P21-Arc | ARP2/3 complex ARPC3 (21 kDa) subunit | 2.2E-74 | 1 | 192 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05933|ARPC3_YEAST | Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1 SV=1 | 1 | 192 | 2.0E-64 |
| sp|Q9Y7J4|ARPC3_SCHPO | Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1 | 1 | 192 | 9.0E-58 |
| sp|O96624|ARPC3_DICDI | Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1 | 3 | 192 | 3.0E-48 |
| sp|Q9JM76|ARPC3_MOUSE | Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3 | 1 | 192 | 9.0E-45 |
| sp|O15145|ARPC3_HUMAN | Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3 | 1 | 192 | 2.0E-44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05933|ARPC3_YEAST | Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1 SV=1 | 1 | 192 | 2.0E-64 |
| sp|Q9Y7J4|ARPC3_SCHPO | Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1 | 1 | 192 | 9.0E-58 |
| sp|O96624|ARPC3_DICDI | Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1 | 3 | 192 | 3.0E-48 |
| sp|Q9JM76|ARPC3_MOUSE | Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3 | 1 | 192 | 9.0E-45 |
| sp|O15145|ARPC3_HUMAN | Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3 | 1 | 192 | 2.0E-44 |
| sp|Q3T035|ARPC3_BOVIN | Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3 | 1 | 192 | 2.0E-44 |
| sp|Q9XWV3|ARPC3_CAEEL | Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1 | 1 | 192 | 2.0E-41 |
| sp|Q1ECJ7|ARPC3_ARATH | Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana GN=ARPC3 PE=1 SV=1 | 3 | 188 | 2.0E-37 |
| sp|O15604|ARPC3_ENTHI | Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1 | 3 | 139 | 5.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005885 | Arp2/3 protein complex | Yes |
| GO:0005856 | cytoskeleton | Yes |
| GO:0030833 | regulation of actin filament polymerization | Yes |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | Yes |
| GO:1902903 | regulation of supramolecular fiber organization | No |
| GO:0008064 | regulation of actin polymerization or depolymerization | No |
| GO:0043226 | organelle | No |
| GO:0050789 | regulation of biological process | No |
| GO:0032970 | regulation of actin filament-based process | No |
| GO:0051128 | regulation of cellular component organization | No |
| GO:0090066 | regulation of anatomical structure size | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0044087 | regulation of cellular component biogenesis | No |
| GO:0032535 | regulation of cellular component size | No |
| GO:0008150 | biological_process | No |
| GO:0016043 | cellular component organization | No |
| GO:0032956 | regulation of actin cytoskeleton organization | No |
| GO:0005575 | cellular_component | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0043229 | intracellular organelle | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0045010 | actin nucleation | No |
| GO:0065007 | biological regulation | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0110053 | regulation of actin filament organization | No |
| GO:0097435 | supramolecular fiber organization | No |
| GO:0009987 | cellular process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0032991 | protein-containing complex | No |
| GO:0030832 | regulation of actin filament length | No |
| GO:0051493 | regulation of cytoskeleton organization | No |
| GO:0007015 | actin filament organization | No |
| GO:0043254 | regulation of protein-containing complex assembly | No |
| GO:0032271 | regulation of protein polymerization | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2824 MPAYNSVFNDDPNPPRLIGNFPLLPLRTKTRGPAYTLPLPSPPLPANESPDPDSESYDILDEVLALFRANTFFRN FEIQGPADRLLVYGIWFISDCLHRIKPHASLREATKDVMNTALDLHFAIPGDPGFPLNQMYEPPKDRQDAEQLKQ YMSQVRQELAVRLLAKVYADDETRPSKWWLSFTKRKFMGKSL* |
| Coding | >OphauB2|2824 ATGCCTGCCTACAATTCCGTCTTCAACGACGACCCCAACCCGCCCCGTCTCATCGGCAACTTCCCGCTCCTCCCC CTCCGCACAAAGACGCGCGGTCCTGCCTACACGCTTCCCTTGCCATCTCCCCCTCTCCCCGCCAACGAGTCGCCC GATCCCGACAGCGAGAGCTACGACATTCTCGACGAGGTCCTGGCCCTCTTTCGCGCAAACACCTTTTTCCGCAAC TTTGAAATCCAGGGCCCCGCCGACCGCCTCCTCGTCTACGGCATCTGGTTCATCAGCGACTGTCTCCACCGCATC AAGCCCCATGCGTCTCTGCGCGAGGCCACCAAGGATGTCATGAACACGGCCCTCGACCTCCATTTTGCCATTCCC GGCGACCCTGGCTTCCCCTTGAACCAGATGTATGAGCCGCCCAAAGACCGCCAGGACGCCGAGCAGTTGAAGCAG TACATGTCGCAAGTGCGTCAAGAACTCGCTGTCCGCTTATTAGCCAAAGTCTACGCAGATGACGAGACGCGCCCC AGCAAGTGGTGGCTGAGCTTTACAAAGAGGAAGTTTATGGGCAAGTCTCTCTGA |
| Transcript | >OphauB2|2824 ATGCCTGCCTACAATTCCGTCTTCAACGACGACCCCAACCCGCCCCGTCTCATCGGCAACTTCCCGCTCCTCCCC CTCCGCACAAAGACGCGCGGTCCTGCCTACACGCTTCCCTTGCCATCTCCCCCTCTCCCCGCCAACGAGTCGCCC GATCCCGACAGCGAGAGCTACGACATTCTCGACGAGGTCCTGGCCCTCTTTCGCGCAAACACCTTTTTCCGCAAC TTTGAAATCCAGGGCCCCGCCGACCGCCTCCTCGTCTACGGCATCTGGTTCATCAGCGACTGTCTCCACCGCATC AAGCCCCATGCGTCTCTGCGCGAGGCCACCAAGGATGTCATGAACACGGCCCTCGACCTCCATTTTGCCATTCCC GGCGACCCTGGCTTCCCCTTGAACCAGATGTATGAGCCGCCCAAAGACCGCCAGGACGCCGAGCAGTTGAAGCAG TACATGTCGCAAGTGCGTCAAGAACTCGCTGTCCGCTTATTAGCCAAAGTCTACGCAGATGACGAGACGCGCCCC AGCAAGTGGTGGCTGAGCTTTACAAAGAGGAAGTTTATGGGCAAGTCTCTCTGA |
| Gene | >OphauB2|2824 ATGCCTGTATGCCCTCTTTTCTTGCTTGCTTGCTTGCTTGCTTGCTTGACTCTTGCTTGCCGGCCCCATCAACGG CATGAGAGCTGATGCTTACAGCCAGGCCTACAATTCCGTCTTCAACGACGACCCCAACCCGCCCCGTCTCATCGG CAACTTCCCGCTCCTCCCCCTCCGCACAAAGACGCGCGGTCCTGCCTACACGCTTCCCTTGCCATCTCCCCCTCT CCCCGCCAACGAGTCGCCCGATCCCGACAGCGAGAGCTACGACATTCTCGACGAGGTCCTGGCCCTCTTTCGCGC AAACACCTTTTTCCGCAACTTTGAAATCCAGGGCCCCGCCGACCGCCTCCTCGTCTACGGCATCTGGTTCATCAG CGACTGTCTCCACCGCATCAAGCCCCATGCGTCTCTGCGCGAGGCCACCAAGGATGTCATGAACACGGCCCTCGA CCTCCATTTTGCCATTCCCGGCGACCCTGGCTTCCCCTTGAACCAGGTGAGTCATGTCTGCCGCCTTGTCCCGCT ATACTTTGTCACCGTGCACTTTGCCTGGCTCTGACTCATATATCTCGTGCCAGATGTATGAGCCGCCCAAAGACC GCCAGGACGCCGAGCAGTTGAAGCAGTACATGTCGCAAGTGCGTCAAGAACTCGCTGTCCGCTTATTAGCCAAAG TCTACGCAGATGACGAGACGCGCCCCAGCAAGTGGTGGCTGAGCTTTACAAAGAGGAAGTTTATGGGCAAGTCTC TCTGA |