Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2744
Gene name
LocationContig_19:154866..157371
Strand-
Gene length (bp)2505
Transcript length (bp)1341
Coding sequence length (bp)1341
Protein length (aa) 447

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04153 NOT2_3_5 NOT2 / NOT3 / NOT5 family 1.4E-29 324 435

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 287 436 3.0E-30
sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 251 436 5.0E-25
sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=1 SV=2 251 436 5.0E-25
sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 259 445 3.0E-24
sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 254 432 1.0E-21
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Swissprot ID Swissprot Description Start End E-value
sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 287 436 3.0E-30
sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 251 436 5.0E-25
sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=1 SV=2 251 436 5.0E-25
sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 259 445 3.0E-24
sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 254 432 1.0E-21
sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 335 432 2.0E-17
sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=1 SV=2 251 440 3.0E-17
sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 351 436 5.0E-10
sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 351 436 5.0E-10
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GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0065007 biological regulation No
GO:2001141 regulation of RNA biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0010468 regulation of gene expression No
GO:0080090 regulation of primary metabolic process No
GO:0050794 regulation of cellular process No
GO:0009889 regulation of biosynthetic process No
GO:0051252 regulation of RNA metabolic process No
GO:0050789 regulation of biological process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0008150 biological_process No
GO:0019222 regulation of metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0031323 regulation of cellular metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2479
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6056
Ophiocordyceps australis map64 (Brazil) OphauB2|2744 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|04024
Ophiocordyceps camponoti-rufipedis Ophun1|1970
Ophiocordyceps kimflemingae Ophio5|5847
Ophiocordyceps subramaniannii Hirsu2|3579

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2744
MNRSVPQTLRGMPGGFGGQQQPQPPGRSVSSRMPNGKLASNSSGWAFGGGIPMGSTGFQSQTRQLGGNVSFAQSL
SGSQPSAALDMSDFPSLSTNPQLSASQATMWSNAGSRNLSGPVQRNQSTPVSGPTAGQDDVFAAASSRVPPHQGF
GPQNPSSTHVQSHRGNGLLNALSANNRANEARTPPGVSASDPPRGQEGKRADESRLKPLSFRDGSMSRSTHVAAD
SSAQAADGRTHLGAIGNEGSGAKPKDNKVNQLPESVDPLSGMAAVDKWGIKGLRTLMNNHPDFHAMVVGMDPNTL
GLDLSNQELISPQIYSLFDEQPPRPTVTSSRFRLPDCYSVTNVQPIESKIQSFNEETLFWIFYSCPTDAKQQLAA
VELHSRNWRWHKKLQIWLTKDEHMTPQILSPNHERGFYIVWDTNNWRKDRREFTLHYGDLDTALNQGPVLS*
Coding >OphauB2|2744
ATGAATCGGTCAGTACCGCAAACGCTACGAGGAATGCCAGGAGGCTTTGGAGGCCAGCAACAGCCTCAACCGCCG
GGGCGATCAGTATCAAGTCGAATGCCTAATGGCAAGCTAGCCAGCAATAGCTCGGGATGGGCGTTTGGAGGAGGC
ATTCCCATGGGCAGCACTGGCTTTCAAAGCCAGACGCGCCAGCTCGGCGGAAACGTCAGCTTCGCCCAAAGCTTG
AGCGGGTCGCAACCCTCGGCTGCTCTGGACATGTCAGACTTTCCGTCATTGTCTACCAACCCGCAGCTCAGTGCT
AGCCAAGCTACAATGTGGTCAAATGCAGGATCCAGAAATCTGAGCGGTCCTGTACAGCGCAACCAATCGACGCCT
GTATCAGGCCCAACAGCCGGGCAAGATGATGTCTTCGCTGCTGCATCGTCGCGCGTGCCACCTCATCAAGGGTTT
GGTCCTCAAAATCCGAGCTCAACTCATGTGCAATCTCATCGAGGCAACGGCTTACTGAATGCCTTGTCGGCAAAT
AATCGGGCTAATGAGGCGCGAACGCCTCCTGGAGTATCAGCCTCAGATCCACCGCGAGGGCAAGAGGGAAAGCGA
GCAGATGAGTCAAGACTGAAGCCGTTATCCTTTCGAGACGGAAGTATGAGCAGATCTACACATGTGGCAGCCGAC
AGTTCAGCGCAAGCAGCAGACGGCCGGACCCACTTGGGCGCGATAGGAAACGAAGGCTCCGGGGCAAAGCCCAAA
GACAACAAGGTCAACCAACTTCCCGAGTCTGTTGACCCCCTGTCAGGAATGGCTGCGGTGGACAAATGGGGTATC
AAAGGTCTACGGACCTTGATGAACAATCATCCCGATTTCCACGCCATGGTAGTGGGCATGGACCCTAATACTCTG
GGACTTGACTTGAGCAACCAGGAGCTGATATCTCCCCAAATTTACTCCCTCTTTGATGAGCAACCACCAAGGCCG
ACAGTAACGTCAAGCCGGTTTCGGCTGCCCGACTGTTACAGTGTAACTAATGTGCAACCTATTGAGAGCAAGATT
CAAAGTTTTAATGAGGAAACACTCTTTTGGATATTTTACAGCTGTCCAACTGATGCCAAGCAACAGTTGGCAGCG
GTAGAGTTGCACTCTCGAAACTGGCGGTGGCACAAAAAGCTGCAAATTTGGCTGACCAAGGACGAGCATATGACA
CCCCAAATACTGAGTCCAAACCATGAAAGGGGATTTTACATTGTGTGGGACACCAACAATTGGCGCAAGGATCGG
AGAGAGTTTACGCTGCATTATGGCGATCTGGACACTGCTCTTAACCAAGGGCCAGTTTTGTCCTAG
Transcript >OphauB2|2744
ATGAATCGGTCAGTACCGCAAACGCTACGAGGAATGCCAGGAGGCTTTGGAGGCCAGCAACAGCCTCAACCGCCG
GGGCGATCAGTATCAAGTCGAATGCCTAATGGCAAGCTAGCCAGCAATAGCTCGGGATGGGCGTTTGGAGGAGGC
ATTCCCATGGGCAGCACTGGCTTTCAAAGCCAGACGCGCCAGCTCGGCGGAAACGTCAGCTTCGCCCAAAGCTTG
AGCGGGTCGCAACCCTCGGCTGCTCTGGACATGTCAGACTTTCCGTCATTGTCTACCAACCCGCAGCTCAGTGCT
AGCCAAGCTACAATGTGGTCAAATGCAGGATCCAGAAATCTGAGCGGTCCTGTACAGCGCAACCAATCGACGCCT
GTATCAGGCCCAACAGCCGGGCAAGATGATGTCTTCGCTGCTGCATCGTCGCGCGTGCCACCTCATCAAGGGTTT
GGTCCTCAAAATCCGAGCTCAACTCATGTGCAATCTCATCGAGGCAACGGCTTACTGAATGCCTTGTCGGCAAAT
AATCGGGCTAATGAGGCGCGAACGCCTCCTGGAGTATCAGCCTCAGATCCACCGCGAGGGCAAGAGGGAAAGCGA
GCAGATGAGTCAAGACTGAAGCCGTTATCCTTTCGAGACGGAAGTATGAGCAGATCTACACATGTGGCAGCCGAC
AGTTCAGCGCAAGCAGCAGACGGCCGGACCCACTTGGGCGCGATAGGAAACGAAGGCTCCGGGGCAAAGCCCAAA
GACAACAAGGTCAACCAACTTCCCGAGTCTGTTGACCCCCTGTCAGGAATGGCTGCGGTGGACAAATGGGGTATC
AAAGGTCTACGGACCTTGATGAACAATCATCCCGATTTCCACGCCATGGTAGTGGGCATGGACCCTAATACTCTG
GGACTTGACTTGAGCAACCAGGAGCTGATATCTCCCCAAATTTACTCCCTCTTTGATGAGCAACCACCAAGGCCG
ACAGTAACGTCAAGCCGGTTTCGGCTGCCCGACTGTTACAGTGTAACTAATGTGCAACCTATTGAGAGCAAGATT
CAAAGTTTTAATGAGGAAACACTCTTTTGGATATTTTACAGCTGTCCAACTGATGCCAAGCAACAGTTGGCAGCG
GTAGAGTTGCACTCTCGAAACTGGCGGTGGCACAAAAAGCTGCAAATTTGGCTGACCAAGGACGAGCATATGACA
CCCCAAATACTGAGTCCAAACCATGAAAGGGGATTTTACATTGTGTGGGACACCAACAATTGGCGCAAGGATCGG
AGAGAGTTTACGCTGCATTATGGCGATCTGGACACTGCTCTTAACCAAGGGCCAGTTTTGTCCTAG
Gene >OphauB2|2744
ATGAATCGGTCAGGTAGGACGAGCCCCGATTTCCATGCATGGCCATTGTCGGACTCCAAGCCGCCTCGCTGCAGC
TTCCGTGACGCCTCCAGCCCGTGCGAATTGTGTCCATGCTGCGATGATGGACTTTGGAGACCCGAAGCGCGGGCT
CCAGGTGACGGCCCAGTCTATGCCAGGCAATCATTCTTCATGGCCCGCGACATGGAGCACGACTCGATCTACATC
GGCGCACGCCTAGGCTCGGTAGCAGTTGGCTTGGACAATCAAGCTGCTGGCTAAGCGCTCCAAGAGAGGCCTGCA
GTAGTCGAATGGCTGTCTTGTCAGCAATTATCTACAGATGCTGACGGGAGTTTGGAAAACAGTACCGCAAACGCT
ACGAGGAATGCCAGGAGGCTTTGGAGGCCAGCAACAGCCTCAACCGCCGGGGCGATCAGTATCAAGTCGAATGCC
TAATGGCAAGCTAGGTGTGCACATGGACCGACCTCGGACTGCCTTTGGGGCCGAATACCGGCTGACGGATCTTGC
TGCTACTTTCCGAGAACAATAGCCAGCAATAGCTCGGGATGGGCGTTTGGAGGAGGCATTCCCATGGGCAGCACT
GGCTTTCAAAGCCAGACGCGCCAGCTCGGCGGAAACGTCAGCTTCGCCCAAAGCTTGAGCGGGTCGCAACCCTCG
GCTGCTCTGGACATGTCGTAGGTACACCCACTGGCACCTCTCCCTCACCTTCCATCTTTCTTGGCCCGCCCATGC
CTCGGCGCTGTCGCCAACCATCCGTGCCGACAACAATGGCGAGAAAAGCAAAGCTCGTCAGCAAAGCCACCGATG
CGGCTTGCGTGGATTCTTCTCCCGATCGATTATCCGCTGTCCCCTATTCTGCGGTGGTCAAGGGGTATCAGTTTA
CTCTTCTTTGTATTCCCATTCCCATTCCACCCCCATCTAGCTCTATTGCTCCTCCCGCCCTCTTCTTTCTCAGCC
TCTCTTGCCCATTGTGTTGGTGGTACTCAACTGCAACCGCATGCATGCTGACCATTCTCGCTGTCAGAGACTTTC
CGTCATTGTCTACCAACCCGCAGCTCAGTGCTAGCCAAGCTACAATGTGGTCAAATGCAGGATCCAGAAATCTGA
GCGGTCCTGTACAGCGCAACCAATCGACGCCTGTATCAGGCCCAACAGCCGGGCAAGATGATGTCTTCGCTGCTG
CATCGTCGCGCGTGCCACCTCATCAAGGTTCGTTCCGCTGAAGTGGCCACAAGAGAAGCCAGCCGTGTGTCAGAC
CCTCCTGGCTAGTCTTGAGGACTCGTCCCCCTTGTCTATGCAGGGATTGCCAGAGGCGTTGTTGCAAGCTACAGA
TTAACCCATCTGACATGTTGCTCTCTAGGGTTTGGTCCTCAAAATCCGAGCTCAACTCATGTGCAATCTCATCGA
GGCAACGGCTTACTGAATGCCTTGTCGGCAAATAATCGGGCTAATGAGGCGCGAACGCCTCCTGGAGTATCAGCC
TCAGGTATTTTGATCCTTGTCCTGGGGATCATGGTCAGACTAGGAATACGATTGACACGCAACAGATCCACCGCG
AGGGCAAGAGGGAAAGCGAGCAGATGAGTCAAGACTGAAGCCGTTATCCTTTCGAGACGGAAGTATGAGCAGATC
TACACATGTGGCAGCCGACAGTTCAGCGCAAGCAGCAGACGGCCGGACCCACTTGGGCGCGATAGGAAACGAAGG
CTCCGGGGCAAAGCCCAAAGACAACAAGGTCAACCAACTTCCCGAGTCTGTTGACCCCCTGTCAGGAATGGCTGC
GGTGGACAAATGGGGTATCAAAGGTCTACGGACCTTGATGAACAATCATCCCGATTTCCACGCCATGGTAGTGGG
CATGGACCCTAATACTCTGGGACTTGACTTGAGCAACCAGGAGTAAGACAAATCTGCTATTCAATTGCCAGAAGA
GCCAAAAACTAACTGCTACAGGCTGATATCTCCCCAAATTTACTCCCTCTTTGATGAGCAACCACCAAGGCCGAC
AGTAACGTCAAGCCGGTTTCGGCTGCCCGACTGTTACAGTGTAACTAATGTGCAACCTATTGAGAGCAAGATTCA
AAGTTTTAATGAGGAAACACTCTTTTGGATATTTTACAGCTGTCCAACTGATGCCAAGCAACAGTTGGCAGCGGT
AGAGTTGTATGTGGACAATGTACTTCAGCTAACCAAGTTCAAAGCGGCTCATGCAAATCACAGGCACTCTCGAAA
CTGGCGGTGGCACAAAAAGCTGCAAATTTGGCTGACCAAGGACGAGCATATGACACCCCAAATACTGAGTCCAAA
CCATGAAAGGGGATTTTACATTGTGTGGGACACCAACAATTGGCGCAAGGATCGGGTATGCTATTGCCTATGCTA
ACTATCAATTTATTTGAGGCTAATGAGGAGTATGCACAGAGAGAGTTTACGCTGCATTATGGCGATCTGGACACT
GCTCTTAACCAAGGGCCAGTTTTGTCCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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