Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|272
Gene name
Location	Contig_100:10372..12073
Strand	-
Gene length (bp)	1701
Transcript length (bp)	1269
Coding sequence length (bp)	1269
Protein length (aa)	423

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08790	zf-LYAR	LYAR-type C2HC zinc finger	1.5E-14	30	57

Swissprot hits

[Show all]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94311\|YH56_SCHPO	UPF0743 protein C215.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC215.06c PE=1 SV=2	1	63	3.0E-22
sp\|P37263\|YC16_YEAST	UPF0743 protein YCR087C-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR087C-A PE=1 SV=1	1	63	2.0E-15
sp\|Q08288\|LYAR_MOUSE	Cell growth-regulating nucleolar protein OS=Mus musculus GN=Lyar PE=1 SV=2	1	66	4.0E-11
sp\|Q09464\|YQ58_CAEEL	Uncharacterized protein C16C10.8 OS=Caenorhabditis elegans GN=C16C10.8 PE=4 SV=1	1	65	1.0E-10
sp\|Q9NX58\|LYAR_HUMAN	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	1	90	2.0E-10

[Show all]

[Show less]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94311\|YH56_SCHPO	UPF0743 protein C215.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC215.06c PE=1 SV=2	1	63	3.0E-22
sp\|P37263\|YC16_YEAST	UPF0743 protein YCR087C-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR087C-A PE=1 SV=1	1	63	2.0E-15
sp\|Q08288\|LYAR_MOUSE	Cell growth-regulating nucleolar protein OS=Mus musculus GN=Lyar PE=1 SV=2	1	66	4.0E-11
sp\|Q09464\|YQ58_CAEEL	Uncharacterized protein C16C10.8 OS=Caenorhabditis elegans GN=C16C10.8 PE=4 SV=1	1	65	1.0E-10
sp\|Q9NX58\|LYAR_HUMAN	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	1	90	2.0E-10
sp\|Q6AYK5\|LYAR_RAT	Cell growth-regulating nucleolar protein OS=Rattus norvegicus GN=Lyar PE=2 SV=1	1	90	3.0E-10
sp\|O64571\|UBA1C_ARATH	UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2	1	57	3.0E-07

[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|272 MVSFSCEACGDVLVKKKLDAHRTRCHGASFTCIDCMVHFPGLQYRSHTSCISEAQKYQGALYKDKTKAAPQQPPK RHSMAQQPYVEDVIEDDLWTGDEPTPAELPPEAPTPPDGQQPQVNVFDFLVASGQTPNSSTLNLPHQVPKGDSGD ATTLLKNDYDVEKYLDASSLMDADTKPFADYGNNALPASAYVTPLPKSERRKAKDSEMRKDKKRKRLHLDVPGDQ VMTDAPPILHSNLTGGLKGLMRPALPPSPEYSGVDVAYNSPASPPKKSKHSKRAKHGQVGGSILDMFTGASKTKS DKKKKKKKSSSSSSSSKKHSRRHHEQKEDKLIEFGPPATEAKGNNADGQIIVYKPRADAFLSFVTKGPESERGCS MNKALKRYHRERQAADGGTAKTKEEKELWKDLRLRRNDRGEIVLFAL*
Coding	>OphauB2\|272 ATGGTGTCGTTTTCGTGTGAGGCCTGCGGCGACGTTTTGGTCAAGAAGAAGCTTGATGCGCACCGCACCCGCTGC CACGGAGCTTCCTTTACCTGTATCGATTGCATGGTCCACTTTCCAGGCTTGCAATACCGATCCCACACTTCTTGC ATCAGCGAGGCCCAAAAGTACCAGGGCGCTCTTTACAAGGACAAGACTAAGGCCGCGCCGCAGCAGCCTCCCAAG CGCCACAGCATGGCTCAGCAGCCCTATGTTGAAGATGTCATTGAGGATGATTTGTGGACTGGAGACGAGCCGACG CCGGCGGAGCTTCCACCAGAGGCGCCCACGCCTCCCGACGGCCAGCAGCCCCAAGTAAACGTGTTTGATTTTCTC GTTGCATCTGGCCAAACTCCAAACTCTTCTACTCTAAACTTGCCGCACCAAGTTCCAAAGGGCGACTCTGGCGAT GCAACGACGCTGCTCAAGAATGATTACGACGTTGAAAAATACCTGGATGCCTCCTCTCTCATGGATGCCGACACG AAGCCCTTTGCCGATTACGGCAATAATGCTCTACCTGCTTCTGCCTATGTCACGCCTCTTCCAAAGAGCGAGCGG CGAAAGGCAAAGGACAGCGAAATGCGAAAGGATAAGAAGCGCAAGCGCTTGCATCTTGATGTTCCTGGCGATCAA GTCATGACGGATGCTCCTCCAATTCTCCATTCCAATCTGACTGGTGGCCTCAAAGGGCTGATGCGCCCCGCTCTA CCCCCATCTCCAGAGTACTCTGGCGTTGACGTGGCTTATAATTCGCCAGCCAGCCCACCAAAGAAGTCCAAGCAC TCAAAGCGTGCCAAGCATGGCCAAGTGGGAGGCAGCATCCTTGACATGTTTACCGGCGCATCCAAGACAAAGTCG GACAAGAAGAAGAAGAAGAAGAAGTCGTCGTCGTCGTCGTCGTCTTCCAAGAAGCACTCGCGACGGCACCACGAG CAAAAGGAAGACAAGCTCATTGAGTTTGGCCCTCCAGCCACCGAGGCCAAGGGCAACAATGCAGACGGGCAAATC ATTGTCTACAAGCCGCGGGCCGACGCCTTTCTCAGCTTCGTGACAAAGGGACCCGAGAGCGAGCGCGGGTGCAGT ATGAACAAGGCACTCAAGCGCTACCACCGCGAGCGGCAGGCGGCCGACGGGGGCACAGCCAAGACCAAGGAGGAA AAGGAGCTGTGGAAAGATTTGCGGCTGCGTCGCAACGACCGGGGCGAAATTGTCCTGTTTGCCCTCTGA
Transcript	>OphauB2\|272 ATGGTGTCGTTTTCGTGTGAGGCCTGCGGCGACGTTTTGGTCAAGAAGAAGCTTGATGCGCACCGCACCCGCTGC CACGGAGCTTCCTTTACCTGTATCGATTGCATGGTCCACTTTCCAGGCTTGCAATACCGATCCCACACTTCTTGC ATCAGCGAGGCCCAAAAGTACCAGGGCGCTCTTTACAAGGACAAGACTAAGGCCGCGCCGCAGCAGCCTCCCAAG CGCCACAGCATGGCTCAGCAGCCCTATGTTGAAGATGTCATTGAGGATGATTTGTGGACTGGAGACGAGCCGACG CCGGCGGAGCTTCCACCAGAGGCGCCCACGCCTCCCGACGGCCAGCAGCCCCAAGTAAACGTGTTTGATTTTCTC GTTGCATCTGGCCAAACTCCAAACTCTTCTACTCTAAACTTGCCGCACCAAGTTCCAAAGGGCGACTCTGGCGAT GCAACGACGCTGCTCAAGAATGATTACGACGTTGAAAAATACCTGGATGCCTCCTCTCTCATGGATGCCGACACG AAGCCCTTTGCCGATTACGGCAATAATGCTCTACCTGCTTCTGCCTATGTCACGCCTCTTCCAAAGAGCGAGCGG CGAAAGGCAAAGGACAGCGAAATGCGAAAGGATAAGAAGCGCAAGCGCTTGCATCTTGATGTTCCTGGCGATCAA GTCATGACGGATGCTCCTCCAATTCTCCATTCCAATCTGACTGGTGGCCTCAAAGGGCTGATGCGCCCCGCTCTA CCCCCATCTCCAGAGTACTCTGGCGTTGACGTGGCTTATAATTCGCCAGCCAGCCCACCAAAGAAGTCCAAGCAC TCAAAGCGTGCCAAGCATGGCCAAGTGGGAGGCAGCATCCTTGACATGTTTACCGGCGCATCCAAGACAAAGTCG GACAAGAAGAAGAAGAAGAAGAAGTCGTCGTCGTCGTCGTCGTCTTCCAAGAAGCACTCGCGACGGCACCACGAG CAAAAGGAAGACAAGCTCATTGAGTTTGGCCCTCCAGCCACCGAGGCCAAGGGCAACAATGCAGACGGGCAAATC ATTGTCTACAAGCCGCGGGCCGACGCCTTTCTCAGCTTCGTGACAAAGGGACCCGAGAGCGAGCGCGGGTGCAGT ATGAACAAGGCACTCAAGCGCTACCACCGCGAGCGGCAGGCGGCCGACGGGGGCACAGCCAAGACCAAGGAGGAA AAGGAGCTGTGGAAAGATTTGCGGCTGCGTCGCAACGACCGGGGCGAAATTGTCCTGTTTGCCCTCTGA
Gene	>OphauB2\|272 ATGGTGTCGTTTTCGTGTGAGGTATGCCATCTCGACACGACTGCAAATCTAGACATGCCCTCTCTCTCTCCTTCT CTCTCATTCTCTCTCATTCTCTCTCTCACTCTCTCTCACACACGCACACGCCTACTGCATACACATACACACACA TGCACACACATACACACACACACACACACAATATGCACCACCCACGCCCCCTCCCTTCTAGCGACAAGGCCCTGC TGACACCGTCATGTCCCGTCCTGCTGCCGCCGATCCCCTGACCTGCCATTGCCCCTTATTGCCTTCCCTTGAATG CTCGTCGTCTATTTTAGTGCCCACCCTCCGCCCGACGCGTCACCCCGCGCCGCATTCATTCGTCTCTTGTATAAA TTGACTCAATTTCCAACAGGCCTGCGGCGACGTTTTGGTCAAGAAGAAGCTTGATGCGCACCGCACCCGCTGCCA CGGAGCTTCCTTTACCTGTATCGATTGCATGGTCCACTTTCCAGGCTTGCAATACCGATCCCACACTGTACGTCT GCCCCCCACGCCTCCTTGGGCCCGTCCTTTATCCTCTGACACTTTGCTCAGTCTTGCATCAGCGAGGCCCAAAAG TACCAGGGCGCTCTTTACAAGGACAAGACTAAGGCCGCGCCGCAGCAGCCTCCCAAGCGCCACAGCATGGCTCAG CAGCCCTATGTTGAAGATGTCATTGAGGATGATTTGTGGACTGGAGACGAGCCGACGCCGGCGGAGCTTCCACCA GAGGCGCCCACGCCTCCCGACGGCCAGCAGCCCCAAGTAAACGTGTTTGATTTTCTCGTTGCATCTGGCCAAACT CCAAACTCTTCTACTCTAAACTTGCCGCACCAAGTTCCAAAGGGCGACTCTGGCGATGCAACGACGCTGCTCAAG AATGATTACGACGTTGAAAAATACCTGGATGCCTCCTCTCTCATGGATGCCGACACGAAGCCCTTTGCCGATTAC GGCAATAATGCTCTACCTGCTTCTGCCTATGTCACGCCTCTTCCAAAGAGCGAGCGGCGAAAGGCAAAGGACAGC GAAATGCGAAAGGATAAGAAGCGCAAGCGCTTGCATCTTGATGTTCCTGGCGATCAAGTCATGACGGATGCTCCT CCAATTCTCCATTCCAATCTGACTGGTGGCCTCAAAGGGCTGATGCGCCCCGCTCTACCCCCATCTCCAGAGTAC TCTGGCGTTGACGTGGCTTATAATTCGCCAGCCAGCCCACCAAAGAAGTCCAAGCACTCAAAGCGTGCCAAGCAT GGCCAAGTGGGAGGCAGCATCCTTGACATGTTTACCGGCGCATCCAAGACAAAGTCGGACAAGAAGAAGAAGAAG AAGAAGTCGTCGTCGTCGTCGTCGTCTTCCAAGAAGCACTCGCGACGGCACCACGAGCAAAAGGAAGACAAGCTC ATTGAGTTTGGCCCTCCAGCCACCGAGGCCAAGGGCAACAATGCAGACGGGCAAATCATTGTCTACAAGCCGCGG GCCGACGCCTTTCTCAGCTTCGTGACAAAGGGACCCGAGAGCGAGCGCGGGTGCAGTATGAACAAGGCACTCAAG CGCTACCACCGCGAGCGGCAGGCGGCCGACGGGGGCACAGCCAAGACCAAGGAGGAAAAGGAGCTGTGGAAAGAT TTGCGGCTGCGTCGCAACGACCGGGGCGAAATTGTCCTGTTTGCCCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail