Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2713
Gene name
LocationContig_19:85186..85867
Strand+
Gene length (bp)681
Transcript length (bp)552
Coding sequence length (bp)552
Protein length (aa) 184

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06417 DUF1077 Protein of unknown function (DUF1077) 3.9E-50 57 171

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1 28 179 2.0E-30
sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1 28 170 7.0E-24
sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1 45 167 4.0E-21
sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1 45 167 2.0E-20
sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 66 167 4.0E-19
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1 28 179 2.0E-30
sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1 28 170 7.0E-24
sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1 45 167 4.0E-21
sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1 45 167 2.0E-20
sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 66 167 4.0E-19
sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4 PE=1 SV=2 66 167 4.0E-19
sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 66 167 4.0E-19
sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=1 SV=1 66 167 4.0E-19
sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1 66 167 4.0E-19
sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2 SV=1 61 183 7.0E-19
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 93 115 22
2 136 158 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2713
MAVSNLNLPSWAAQLASPPLARTKVPGIPDPIGFSASTASKKKDGKSQPQSRRGPTADEMETLKLKKAWEVALAP
VKSLPMTAIMMYMSGNSLQIFSIMMVFMAFKNPLVGLLNTNQAFERFQTDSNNAKLFQTKLVYVAMQMVALAVGV
WKINAMGLLPTTRSDWLMWESQRIPVERAKMAL*
Coding >OphauB2|2713
ATGGCGGTCTCAAACCTCAATTTACCGTCATGGGCTGCACAGCTCGCGTCGCCGCCTTTGGCCCGCACCAAAGTG
CCCGGCATACCTGATCCCATTGGCTTCTCCGCCAGCACTGCTTCCAAGAAGAAAGACGGCAAATCTCAGCCGCAG
TCACGCAGAGGCCCAACCGCCGATGAGATGGAGACGCTCAAGCTCAAAAAGGCGTGGGAGGTTGCGCTCGCCCCC
GTCAAGTCACTGCCCATGACGGCCATCATGATGTACATGTCGGGCAATTCGCTCCAGATTTTCAGCATCATGATG
GTTTTCATGGCCTTCAAAAACCCTCTCGTTGGCCTTCTCAACACAAATCAAGCCTTTGAACGCTTCCAGACCGAC
TCCAACAATGCAAAGCTGTTTCAAACAAAGCTCGTCTATGTCGCCATGCAAATGGTGGCTCTAGCAGTGGGCGTC
TGGAAGATCAACGCAATGGGCTTATTACCAACAACCCGGTCCGATTGGCTCATGTGGGAATCCCAAAGGATACCC
GTAGAACGGGCAAAAATGGCTCTGTAA
Transcript >OphauB2|2713
ATGGCGGTCTCAAACCTCAATTTACCGTCATGGGCTGCACAGCTCGCGTCGCCGCCTTTGGCCCGCACCAAAGTG
CCCGGCATACCTGATCCCATTGGCTTCTCCGCCAGCACTGCTTCCAAGAAGAAAGACGGCAAATCTCAGCCGCAG
TCACGCAGAGGCCCAACCGCCGATGAGATGGAGACGCTCAAGCTCAAAAAGGCGTGGGAGGTTGCGCTCGCCCCC
GTCAAGTCACTGCCCATGACGGCCATCATGATGTACATGTCGGGCAATTCGCTCCAGATTTTCAGCATCATGATG
GTTTTCATGGCCTTCAAAAACCCTCTCGTTGGCCTTCTCAACACAAATCAAGCCTTTGAACGCTTCCAGACCGAC
TCCAACAATGCAAAGCTGTTTCAAACAAAGCTCGTCTATGTCGCCATGCAAATGGTGGCTCTAGCAGTGGGCGTC
TGGAAGATCAACGCAATGGGCTTATTACCAACAACCCGGTCCGATTGGCTCATGTGGGAATCCCAAAGGATACCC
GTAGAACGGGCAAAAATGGCTCTGTAA
Gene >OphauB2|2713
ATGGCGGTCTCAAACCTCAATTTACCGTCATGGGCTGCACAGCTCGCGTCGCCGCCTTTGGCCCGCACCAAAGTG
CCCGGCATACCTGATCCCATTGGCTTCTCCGCCAGCACTGCTTCCAAGGTGGGAGACAACAGCCACGACTGGTAC
CCAATGGCATTTGACTGATAGAGGCGGCTGCTATAGAAGAAAGACGGCAAATCTCAGCCGCAGTCACGCAGAGGC
CCAACCGCCGATGAGATGGAGACGCTCAAGCTCAAAAAGGCGTGGGAGGTTGCGCTCGCCCCCGTCAAGTCACTG
CCCATGACGGCCATCATGATGTACATGTCGGGCAATTCGCTCCAGATTTTCAGCATCATGATGGTTTTCATGGCC
TTCAAAAACCCTCTCGTTGGCCTTCTCAACACAAATCAAGCCTTTGAACGCTTCCAGACCGACTCCAACAATGCA
AAGCTGTTTCAAACAAAGCTCGTCTATGTCGCCATGCAAATGGTGGCTCTAGCAGTGGGCGTCTGGAAGATCAAC
GCAATGGGCTTATTACCGTGCGTCTTCTCTTTCTATAGAGTTGCTTTTGTCTCGATACACAGGTGCTGACTCAAA
GCAAACAGAACAACCCGGTCCGATTGGCTCATGTGGGAATCCCAAAGGATACCCGTAGAACGGGCAAAAATGGCT
CTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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