© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|271 |
| Gene name | |
| Location | Contig_100:8706..9816 |
| Strand | + |
| Gene length (bp) | 1110 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04757 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region | 2.1E-36 | 24 | 228 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.7E-10 | 316 | 354 |
| PF13639 | zf-RING_2 | Ring finger domain | 8.9E-10 | 316 | 355 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 1.3E-08 | 314 | 356 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 3.1E-08 | 317 | 354 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 3.2E-06 | 317 | 352 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00940|PEX10_PICAN | Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3 SV=1 | 9 | 367 | 4.0E-54 |
| sp|O60683|PEX10_HUMAN | Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1 | 2 | 367 | 3.0E-42 |
| sp|Q9SYU4|PEX10_ARATH | Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10 PE=1 SV=1 | 7 | 355 | 1.0E-40 |
| sp|Q8HXW8|PEX10_MACFA | Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10 PE=2 SV=1 | 2 | 367 | 3.0E-39 |
| sp|Q05568|PEX10_YEAST | Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1 | 7 | 367 | 5.0E-39 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00940|PEX10_PICAN | Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3 SV=1 | 9 | 367 | 4.0E-54 |
| sp|O60683|PEX10_HUMAN | Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1 | 2 | 367 | 3.0E-42 |
| sp|Q9SYU4|PEX10_ARATH | Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10 PE=1 SV=1 | 7 | 355 | 1.0E-40 |
| sp|Q8HXW8|PEX10_MACFA | Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10 PE=2 SV=1 | 2 | 367 | 3.0E-39 |
| sp|Q05568|PEX10_YEAST | Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1 | 7 | 367 | 5.0E-39 |
| sp|B1AUE5|PEX10_MOUSE | Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1 | 10 | 367 | 1.0E-38 |
| sp|Q92265|PEX10_PICPA | Peroxisome biogenesis factor 10 OS=Komagataella pastoris GN=PEX10 PE=1 SV=1 | 9 | 356 | 2.0E-34 |
| sp|Q54S31|PEX10_DICDI | Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum GN=pex10 PE=3 SV=2 | 9 | 197 | 5.0E-19 |
| sp|Q9UUF0|PEX10_SCHPO | Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1 | 314 | 367 | 2.0E-13 |
| sp|Q54S31|PEX10_DICDI | Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum GN=pex10 PE=3 SV=2 | 316 | 366 | 5.0E-10 |
| sp|P93030|RMA2_ARATH | E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1 | 317 | 366 | 6.0E-09 |
| sp|Q91YT2|RN185_MOUSE | E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1 | 271 | 366 | 4.0E-08 |
| sp|Q8GUK7|RMA3_ARATH | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1 | 317 | 366 | 7.0E-08 |
| sp|Q6R567|RMA1_CAPAN | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1 | 317 | 366 | 2.0E-07 |
| sp|Q568Y3|RN185_RAT | E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1 | 316 | 366 | 3.0E-07 |
| sp|Q69ZS0|PZRN3_MOUSE | E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1 SV=3 | 316 | 369 | 4.0E-07 |
| sp|Q5ZIR9|RN185_CHICK | E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1 | 316 | 366 | 4.0E-07 |
| sp|P68907|PZRN3_RAT | E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3 PE=1 SV=1 | 316 | 369 | 4.0E-07 |
| sp|Q96GF1|RN185_HUMAN | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1 | 316 | 366 | 4.0E-07 |
| sp|Q9UPQ7|PZRN3_HUMAN | E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2 | 316 | 369 | 4.0E-07 |
| sp|Q5RFK9|RN185_PONAB | E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1 | 316 | 366 | 5.0E-07 |
| sp|Q5M807|RNF5_RAT | E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 | 316 | 366 | 6.0E-07 |
| sp|O35445|RNF5_MOUSE | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 | 316 | 366 | 6.0E-07 |
| sp|Q99942|RNF5_HUMAN | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 | 316 | 366 | 6.0E-07 |
| sp|Q9P3U8|YJ95_SCHPO | Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=3 SV=1 | 316 | 355 | 7.0E-07 |
| sp|Q6PC78|RN185_DANRE | E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2 SV=1 | 316 | 366 | 7.0E-07 |
| sp|Q09463|RNF5_CAEEL | RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1 | 316 | 366 | 9.0E-07 |
| sp|Q06554|IRC20_YEAST | Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1 SV=1 | 240 | 356 | 9.0E-07 |
| sp|Q3UF64|RNFT2_MOUSE | RING finger and transmembrane domain-containing protein 2 OS=Mus musculus GN=Rnft2 PE=2 SV=2 | 317 | 359 | 8.0E-06 |
| sp|O64425|RMA1_ARATH | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1 | 317 | 366 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|271 MAASSPFPFALAPDIVRAHQKDAFFSGHLANSFADLVRRLAGARTAHALSPELRSLAALVYLGLTTLPGNRTLGE EYCDLVQVCTRHGPARLPSMACRAAYLALAVIVPYFASRALPLLRSRIRAMIDRGLARLARTSKPTACLEARILR YLDHHLALLTSPASLQAVTLALFYFSGTYYELSKRLLSLRYVLTRTLPDSPDRAGYELLGVLLVIQLSLQAYLHV RSLVARPPWSLAPPRERTAFQSTTVDVSLDHANSYSANSDLLLTELGTRGPQASSVDLAATTHTPLAPSPRFDLA GGHGVMAYIKGLQQRKCTLCLEELKDPAATQCGHVFCWQCICDWVREKPECPLCRGDAMVQHIIPLRTL* |
| Coding | >OphauB2|271 ATGGCCGCCTCCAGCCCTTTCCCCTTTGCGCTGGCCCCTGATATTGTTCGAGCCCATCAAAAGGATGCCTTCTTC TCGGGCCATCTCGCCAACTCGTTTGCCGACCTGGTCCGCCGTCTGGCCGGCGCCCGCACCGCCCATGCTCTGAGC CCCGAGCTGCGCTCCCTCGCCGCCCTCGTCTACCTTGGCCTCACCACCCTCCCAGGCAACCGCACCCTCGGCGAA GAGTACTGCGACTTGGTGCAGGTCTGCACCCGCCATGGCCCGGCCCGCCTGCCCTCGATGGCATGTCGCGCAGCC TACCTGGCCTTGGCCGTCATTGTGCCCTATTTTGCCAGCCGCGCTCTGCCCTTGCTTCGCTCCCGCATTCGCGCC ATGATTGACCGTGGCCTGGCCCGTCTGGCCCGCACCTCCAAGCCGACAGCTTGTCTCGAGGCGCGCATTCTGCGC TACCTCGACCATCACCTCGCCCTCCTAACGTCGCCCGCCTCGCTCCAGGCCGTCACTCTGGCCCTCTTTTACTTT TCCGGCACCTACTACGAGCTCTCCAAGCGCCTCCTCTCCCTTCGATATGTCCTCACCCGCACTCTTCCCGACTCT CCCGACCGTGCCGGCTACGAGCTGCTCGGCGTCCTCCTCGTCATCCAGCTCTCCCTCCAGGCCTATCTACACGTG CGCTCTCTTGTAGCCCGGCCCCCATGGTCGCTTGCGCCGCCTCGCGAGCGCACCGCCTTCCAGTCCACCACGGTC GACGTCTCCCTCGACCACGCAAACTCGTACTCGGCAAATAGCGATTTGCTTCTCACAGAACTGGGCACTCGCGGG CCCCAGGCAAGCAGCGTCGATCTCGCCGCCACCACACACACGCCCCTGGCCCCCAGTCCCCGATTTGACCTGGCT GGCGGCCATGGCGTCATGGCCTACATCAAGGGACTGCAACAGAGGAAGTGCACCCTCTGCCTCGAGGAGCTCAAG GACCCCGCCGCCACCCAGTGTGGCCATGTCTTTTGCTGGCAGTGCATTTGTGACTGGGTGCGCGAGAAGCCCGAG TGCCCCCTGTGCCGCGGCGACGCCATGGTGCAACACATAATCCCACTGCGCACCCTCTAG |
| Transcript | >OphauB2|271 ATGGCCGCCTCCAGCCCTTTCCCCTTTGCGCTGGCCCCTGATATTGTTCGAGCCCATCAAAAGGATGCCTTCTTC TCGGGCCATCTCGCCAACTCGTTTGCCGACCTGGTCCGCCGTCTGGCCGGCGCCCGCACCGCCCATGCTCTGAGC CCCGAGCTGCGCTCCCTCGCCGCCCTCGTCTACCTTGGCCTCACCACCCTCCCAGGCAACCGCACCCTCGGCGAA GAGTACTGCGACTTGGTGCAGGTCTGCACCCGCCATGGCCCGGCCCGCCTGCCCTCGATGGCATGTCGCGCAGCC TACCTGGCCTTGGCCGTCATTGTGCCCTATTTTGCCAGCCGCGCTCTGCCCTTGCTTCGCTCCCGCATTCGCGCC ATGATTGACCGTGGCCTGGCCCGTCTGGCCCGCACCTCCAAGCCGACAGCTTGTCTCGAGGCGCGCATTCTGCGC TACCTCGACCATCACCTCGCCCTCCTAACGTCGCCCGCCTCGCTCCAGGCCGTCACTCTGGCCCTCTTTTACTTT TCCGGCACCTACTACGAGCTCTCCAAGCGCCTCCTCTCCCTTCGATATGTCCTCACCCGCACTCTTCCCGACTCT CCCGACCGTGCCGGCTACGAGCTGCTCGGCGTCCTCCTCGTCATCCAGCTCTCCCTCCAGGCCTATCTACACGTG CGCTCTCTTGTAGCCCGGCCCCCATGGTCGCTTGCGCCGCCTCGCGAGCGCACCGCCTTCCAGTCCACCACGGTC GACGTCTCCCTCGACCACGCAAACTCGTACTCGGCAAATAGCGATTTGCTTCTCACAGAACTGGGCACTCGCGGG CCCCAGGCAAGCAGCGTCGATCTCGCCGCCACCACACACACGCCCCTGGCCCCCAGTCCCCGATTTGACCTGGCT GGCGGCCATGGCGTCATGGCCTACATCAAGGGACTGCAACAGAGGAAGTGCACCCTCTGCCTCGAGGAGCTCAAG GACCCCGCCGCCACCCAGTGTGGCCATGTCTTTTGCTGGCAGTGCATTTGTGACTGGGTGCGCGAGAAGCCCGAG TGCCCCCTGTGCCGCGGCGACGCCATGGTGCAACACATAATCCCACTGCGCACCCTCTAG |
| Gene | >OphauB2|271 ATGGCCGCCTCCAGCCCTTTCCCCTTTGCGCTGGCCCCTGATATTGTTCGAGCCCATCAAAAGGATGCCTTCTTC TCGGGCCATCTCGCCAACTCGTTTGCCGACCTGGTCCGCCGTCTGGCCGGCGCCCGCACCGCCCATGCTCTGAGC CCCGAGCTGCGCTCCCTCGCCGCCCTCGTCTACCTTGGCCTCACCACCCTCCCAGGCAACCGCACCCTCGGCGAA GAGTACTGCGACTTGGTGCAGGTCTGCACCCGCCATGGCCCGGCCCGCCTGCCCTCGATGGCATGTCGCGCAGCC TACCTGGCCTTGGCCGTCATTGTGCCCTATTTTGCCAGCCGCGCTCTGCCCTTGCTTCGCTCCCGCATTCGCGCC ATGATTGACCGTGGCCTGGCCCGTCTGGCCCGCACCTCCAAGCCGACAGCTTGTCTCGAGGCGCGCATTCTGCGC TACCTCGACCATCACCTCGCCCTCCTAACGTCGCCCGCCTCGCTCCAGGCCGTCACTCTGGCCCTCTTTTACTTT TCCGGCACCTACTACGAGCTCTCCAAGCGCCTCCTCTCCCTTCGATATGTCCTCACCCGCACTCTTCCCGACTCT CCCGACCGTGCCGGCTACGAGCTGCTCGGCGTCCTCCTCGTCATCCAGCTCTCCCTCCAGGCCTATCTACACGTG CGCTCTCTTGTAGCCCGGCCCCCATGGTCGCTTGCGCCGCCTCGCGAGCGCACCGCCTTCCAGTCCACCACGGTC GACGTCTCCCTCGACCACGCAAACTCGTACTCGGCAAATAGCGATTTGCTTCTCACAGAACTGGGCACTCGCGGG CCCCAGGCAAGCAGCGTCGATCTCGCCGCCACCACACACACGCCCCTGGCCCCCAGTCCCCGATTTGACCTGGCT GGCGGCCATGGCGTCATGGCCTACATCAAGGGACTGCAACAGAGGAAGTGCACCCTCTGCCTCGAGGAGCTCAAG GACCCCGCCGCCACCCAGTGTGGCCATGTCTTTTGCTGGCAGTGCATTTGTGACTGGGTGCGCGAGAAGCCCGAG TGCCCCCTGTGCCGCGGCGACGCCATGGTGCAACACATAATCCCACTGCGCACCCTCTAG |