© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2646 |
| Gene name | |
| Location | Contig_187:992..1918 |
| Strand | - |
| Gene length (bp) | 926 |
| Transcript length (bp) | 873 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13519 | VWA_2 | von Willebrand factor type A domain | 2.1E-26 | 6 | 116 |
| PF00092 | VWA | von Willebrand factor type A domain | 3.8E-10 | 6 | 155 |
| PF04056 | Ssl1 | Ssl1-like | 7.0E-08 | 9 | 138 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P55034|PSMD4_ARATH | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1 | 1 | 241 | 3.0E-76 |
| sp|O94444|RPN10_SCHPO | 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1 | 1 | 253 | 1.0E-69 |
| sp|P38886|RPN10_YEAST | 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3 | 1 | 234 | 3.0E-64 |
| sp|O35226|PSMD4_MOUSE | 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1 | 1 | 234 | 1.0E-59 |
| sp|P55036|PSMD4_HUMAN | 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1 | 1 | 234 | 1.0E-59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P55034|PSMD4_ARATH | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1 | 1 | 241 | 3.0E-76 |
| sp|O94444|RPN10_SCHPO | 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1 | 1 | 253 | 1.0E-69 |
| sp|P38886|RPN10_YEAST | 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3 | 1 | 234 | 3.0E-64 |
| sp|O35226|PSMD4_MOUSE | 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1 | 1 | 234 | 1.0E-59 |
| sp|P55036|PSMD4_HUMAN | 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1 | 1 | 234 | 1.0E-59 |
| sp|Q58DA0|PSMD4_BOVIN | 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1 | 1 | 234 | 1.0E-59 |
| sp|Q553E0|PSMD4_DICDI | 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1 | 1 | 234 | 4.0E-56 |
| sp|P55035|PSMD4_DROME | 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Rpn10 PE=1 SV=2 | 1 | 246 | 3.0E-54 |
| sp|O17453|PSMD4_SCHMA | 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2 | 1 | 242 | 6.0E-54 |
| sp|A2A3N6|PIPSL_HUMAN | Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1 | 3 | 234 | 3.0E-47 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2646 MVLEAVMVVVDNSESSRNGDYQPTRFDSQVDAVTVLFQSITQGNPESSVGLMSMGGKGPEVLVTLTTEQGKILDG LHRTKKKIGGSSHLKRGIQIAALALKHRQNRSQRQRIIVFVCSPIEEDEKELTLLAKKMKKGNTLVDFVLFGDLD DDKTQKKLEAFNTAVKGNEGSHLVVIPPSSKLLSDQLISTPVMLGENVSGQGASSTAPGGGDEFEFGFDPALEPE LALALRMSMEEEKARQEKRAREEEEEAKKASLSDVKEDDESGGAGGSGSGGQSDKKEDGDKMDTS* |
| Coding | >OphauB2|2646 ATGGTCCTCGAGGCCGTCATGGTTGTCGTGGACAATAGCGAGAGCAGCAGAAATGGCGACTACCAACCCACCCGG TTCGACTCCCAAGTCGATGCCGTGACAGTCCTCTTCCAGAGCATTACCCAAGGCAACCCCGAGTCGTCAGTTGGC CTGATGAGCATGGGCGGCAAGGGACCCGAGGTGCTCGTCACCCTGACGACGGAGCAGGGAAAGATCCTCGACGGG TTGCACCGAACCAAGAAGAAGATTGGCGGCTCGTCGCACCTAAAAAGGGGCATCCAAATTGCGGCGCTTGCTCTC AAACACCGACAGAATCGTTCCCAACGACAGCGAATAATAGTCTTTGTGTGCTCGCCGATTGAAGAAGACGAAAAG GAGCTGACGCTCCTGGCCAAGAAGATGAAAAAGGGCAATACTCTGGTAGACTTTGTGCTTTTTGGAGATCTGGAC GACGACAAGACCCAAAAAAAGCTCGAGGCCTTCAACACAGCCGTCAAGGGCAACGAGGGCTCTCACCTTGTCGTG ATTCCACCAAGCAGCAAACTCCTCAGCGACCAGCTCATATCCACCCCAGTCATGCTGGGCGAAAATGTCTCGGGG CAAGGGGCTTCCAGCACTGCTCCGGGTGGTGGCGACGAGTTTGAATTTGGCTTTGACCCTGCCCTGGAGCCCGAG CTTGCACTGGCTCTGCGCATGAGTATGGAGGAGGAAAAGGCGCGACAGGAAAAGCGGGCGCGCGAAGAGGAGGAA GAGGCCAAGAAGGCATCCCTCTCCGACGTCAAGGAGGACGACGAGTCTGGTGGGGCGGGCGGCAGCGGCAGCGGA GGGCAAAGTGACAAGAAGGAGGATGGAGACAAGATGGATACATCGTAA |
| Transcript | >OphauB2|2646 ATGGTCCTCGAGGCCGTCATGGTTGTCGTGGACAATAGCGAGAGCAGCAGAAATGGCGACTACCAACCCACCCGG TTCGACTCCCAAGTCGATGCCGTGACAGTCCTCTTCCAGAGCATTACCCAAGGCAACCCCGAGTCGTCAGTTGGC CTGATGAGCATGGGCGGCAAGGGACCCGAGGTGCTCGTCACCCTGACGACGGAGCAGGGAAAGATCCTCGACGGG TTGCACCGAACCAAGAAGAAGATTGGCGGCTCGTCGCACCTAAAAAGGGGCATCCAAATTGCGGCGCTTGCTCTC AAACACCGACAGAATCGTTCCCAACGACAGCGAATAATAGTCTTTGTGTGCTCGCCGATTGAAGAAGACGAAAAG GAGCTGACGCTCCTGGCCAAGAAGATGAAAAAGGGCAATACTCTGGTAGACTTTGTGCTTTTTGGAGATCTGGAC GACGACAAGACCCAAAAAAAGCTCGAGGCCTTCAACACAGCCGTCAAGGGCAACGAGGGCTCTCACCTTGTCGTG ATTCCACCAAGCAGCAAACTCCTCAGCGACCAGCTCATATCCACCCCAGTCATGCTGGGCGAAAATGTCTCGGGG CAAGGGGCTTCCAGCACTGCTCCGGGTGGTGGCGACGAGTTTGAATTTGGCTTTGACCCTGCCCTGGAGCCCGAG CTTGCACTGGCTCTGCGCATGAGTATGGAGGAGGAAAAGGCGCGACAGGAAAAGCGGGCGCGCGAAGAGGAGGAA GAGGCCAAGAAGGCATCCCTCTCCGACGTCAAGGAGGACGACGAGTCTGGTGGGGCGGGCGGCAGCGGCAGCGGA GGGCAAAGTGACAAGAAGGAGGATGGAGACAAGATGGATACATCGTAA |
| Gene | >OphauB2|2646 ATGGTCCTCGAGGCCGTCATGGTTGTCGTGGACAATAGCGAGAGCAGCAGAAATGGCGACTACCAACCCACCCGG TTCGACTCCCAAGTCGATGCCGTGACAGTCCTCTTCCAGAGCATTACCCAAGGCAACCCCGAGTCGTCAGTTGGC CTGATGAGCATGGGCGGCAAGGGACCCGAGGTGCTCGTCACCCTGACGACGGAGCAGGGAAAGATCCTCGACGGG TTGCACCGAACCAAGAAGAAGATTGGCGGCTCGTCGCACCTAAAAAGGGGCATCCAAATTGCGGCGGTGAGGACT AGTGCACTCTTGTCGTGGCCACGTCTTGGCTAACTCAATGGCAGCTTGCTCTCAAACACCGACAGAATCGTTCCC AACGACAGCGAATAATAGTCTTTGTGTGCTCGCCGATTGAAGAAGACGAAAAGGAGCTGACGCTCCTGGCCAAGA AGATGAAAAAGGGCAATACTCTGGTAGACTTTGTGCTTTTTGGAGATCTGGACGACGACAAGACCCAAAAAAAGC TCGAGGCCTTCAACACAGCCGTCAAGGGCAACGAGGGCTCTCACCTTGTCGTGATTCCACCAAGCAGCAAACTCC TCAGCGACCAGCTCATATCCACCCCAGTCATGCTGGGCGAAAATGTCTCGGGGCAAGGGGCTTCCAGCACTGCTC CGGGTGGTGGCGACGAGTTTGAATTTGGCTTTGACCCTGCCCTGGAGCCCGAGCTTGCACTGGCTCTGCGCATGA GTATGGAGGAGGAAAAGGCGCGACAGGAAAAGCGGGCGCGCGAAGAGGAGGAAGAGGCCAAGAAGGCATCCCTCT CCGACGTCAAGGAGGACGACGAGTCTGGTGGGGCGGGCGGCAGCGGCAGCGGAGGGCAAAGTGACAAGAAGGAGG ATGGAGACAAGATGGATACATCGTAA |