Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2627
Gene name
LocationContig_185:19477..20838
Strand+
Gene length (bp)1361
Transcript length (bp)1290
Coding sequence length (bp)1290
Protein length (aa) 430

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.2E-10 347 393
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.7E-08 347 388
PF13639 zf-RING_2 Ring finger domain 1.0E-06 347 389
PF14447 Prok-RING_4 Prokaryotic RING finger family 4 1.3E-06 348 395
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.5E-06 348 388
PF12861 zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 8.9E-05 347 394

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx8 PE=1 SV=1 331 392 1.0E-09
sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1 344 392 2.0E-08
sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1 344 392 3.0E-08
sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1 344 392 3.0E-08
sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1 345 392 5.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx8 PE=1 SV=1 331 392 1.0E-09
sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1 344 392 2.0E-08
sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1 344 392 3.0E-08
sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1 344 392 3.0E-08
sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1 345 392 5.0E-08
sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1 344 392 5.0E-08
sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 327 392 5.0E-08
sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 327 392 5.0E-08
sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 347 392 7.0E-08
sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 327 392 8.0E-08
sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2 SV=1 344 392 1.0E-07
sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1 344 393 5.0E-07
sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 347 392 6.0E-07
sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 347 392 7.0E-07
sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1 344 392 3.0E-06
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0031145 anaphase-promoting complex-dependent catabolic process Yes
GO:0005680 anaphase-promoting complex Yes
GO:0008270 zinc ion binding Yes
GO:0097602 cullin family protein binding Yes
GO:0061630 ubiquitin protein ligase activity Yes
GO:0003674 molecular_function No
GO:1901565 organonitrogen compound catabolic process No
GO:1902494 catalytic complex No
GO:0140096 catalytic activity, acting on a protein No
GO:0019941 modification-dependent protein catabolic process No
GO:1990234 transferase complex No
GO:0140535 intracellular protein-containing complex No
GO:0000151 ubiquitin ligase complex No
GO:0043167 ion binding No
GO:0006508 proteolysis No
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process No
GO:0043632 modification-dependent macromolecule catabolic process No
GO:0044265 cellular macromolecule catabolic process No
GO:0005488 binding No
GO:0008150 biological_process No
GO:0019787 ubiquitin-like protein transferase activity No
GO:0005575 cellular_component No
GO:0043170 macromolecule metabolic process No
GO:0030163 protein catabolic process No
GO:0046914 transition metal ion binding No
GO:1901575 organic substance catabolic process No
GO:0008152 metabolic process No
GO:0009056 catabolic process No
GO:0006511 ubiquitin-dependent protein catabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0016740 transferase activity No
GO:0019538 protein metabolic process No
GO:0010498 proteasomal protein catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0061659 ubiquitin-like protein ligase activity No
GO:0032991 protein-containing complex No
GO:0044238 primary metabolic process No
GO:0005515 protein binding No
GO:0009987 cellular process No
GO:0006807 nitrogen compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0051603 proteolysis involved in protein catabolic process No
GO:0071704 organic substance metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0000152 nuclear ubiquitin ligase complex No
GO:0044248 cellular catabolic process No
GO:0031461 cullin-RING ubiquitin ligase complex No
GO:0043169 cation binding No
GO:0003824 catalytic activity No
GO:0004842 ubiquitin-protein transferase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2627
MSTPPKSPTPRSRDRFLATPSPIVRSQWWPDLRLPQSSSPSSQHSRFRFAAFDEEDSLDSTLHAFDDSLLPQSSP
GEQQSYSTAGLQSNTSDSSFSSGWTSESPDGDADADGESSVFVSSLHLGRDPNSNSDVDDEYRADDESPLGLIAD
NNFSSPSTLPSIVNLAADDTTLSPQSSLHSSQSIADQSTLAGNESDSGEDSAVQFVHHSYDRLRSLNALSRESSL
FLTDSENIPSPQESTQTTVFDMPPRQLQNLLNSPEPPPQPPASKANKRRRLDSSTNNAQNSTSEALVLPQRPSFN
DAIFSEDTLDNDSQAMATIDLTVSAEAIEQQFSKPEPDKRIKLASFQCVICMDDVTALTVTHCGHLFCQQCLHSS
LHVEANRGNCPMCRTKIDTKPRASYTSKTKGYWPLELKLMTVTKKGKRKADSIS*
Coding >OphauB2|2627
ATGTCGACGCCGCCCAAGTCTCCCACTCCGCGTTCACGGGACCGCTTCCTAGCTACTCCATCGCCTATTGTCCGG
AGCCAGTGGTGGCCAGACTTGCGTCTGCCTCAATCTTCGTCGCCATCTTCCCAGCATTCTCGTTTTCGTTTTGCC
GCCTTTGACGAGGAGGATTCTCTTGACAGCACCTTGCATGCCTTTGACGATTCTCTTTTGCCTCAGTCTTCGCCT
GGCGAGCAGCAGTCCTATAGCACTGCAGGCTTGCAATCTAATACTTCCGACTCTAGCTTCTCTAGCGGATGGACG
TCTGAAAGCCCCGACGGTGACGCTGACGCTGACGGCGAGTCGTCTGTCTTTGTTTCCTCGCTCCACCTCGGCCGA
GACCCAAACAGCAACAGCGACGTCGACGACGAGTATCGAGCCGACGACGAGTCGCCCCTCGGCTTGATTGCTGAT
AACAACTTTTCATCCCCTTCCACCCTTCCGTCCATCGTCAACTTGGCTGCCGATGACACAACCCTTTCACCGCAA
TCGTCGTTGCACTCGAGCCAAAGCATTGCAGACCAATCAACACTTGCAGGCAACGAGTCAGACTCGGGCGAAGAC
TCTGCGGTGCAATTTGTCCACCACAGCTACGACCGCTTGAGATCCTTGAATGCCCTATCTCGAGAGTCCTCACTC
TTTTTGACCGACTCGGAGAATATTCCATCTCCGCAAGAATCCACACAAACTACTGTTTTCGACATGCCGCCTCGG
CAACTGCAAAATCTTCTCAATTCACCAGAGCCGCCACCGCAGCCCCCTGCTTCAAAAGCAAACAAAAGGCGGCGG
CTTGACTCCAGCACAAACAACGCTCAAAATTCAACCTCAGAGGCTCTGGTTTTGCCCCAGCGACCGTCGTTCAAC
GATGCCATCTTTTCCGAGGACACGCTTGATAACGATTCTCAAGCCATGGCAACCATCGATCTCACAGTATCGGCT
GAAGCCATCGAACAGCAATTTAGCAAGCCTGAGCCAGACAAGCGAATCAAGCTGGCTTCCTTTCAGTGCGTCATT
TGCATGGACGACGTAACAGCACTCACCGTCACACACTGTGGCCATCTCTTTTGCCAACAATGCCTTCATTCATCG
CTCCACGTCGAGGCGAACCGCGGCAATTGTCCCATGTGCCGCACAAAGATTGATACCAAGCCCCGTGCTTCTTAC
ACATCAAAGACAAAGGGGTACTGGCCTCTGGAGCTCAAGCTCATGACAGTGACAAAGAAGGGCAAACGCAAGGCC
GATTCGATAAGCTAA
Transcript >OphauB2|2627
ATGTCGACGCCGCCCAAGTCTCCCACTCCGCGTTCACGGGACCGCTTCCTAGCTACTCCATCGCCTATTGTCCGG
AGCCAGTGGTGGCCAGACTTGCGTCTGCCTCAATCTTCGTCGCCATCTTCCCAGCATTCTCGTTTTCGTTTTGCC
GCCTTTGACGAGGAGGATTCTCTTGACAGCACCTTGCATGCCTTTGACGATTCTCTTTTGCCTCAGTCTTCGCCT
GGCGAGCAGCAGTCCTATAGCACTGCAGGCTTGCAATCTAATACTTCCGACTCTAGCTTCTCTAGCGGATGGACG
TCTGAAAGCCCCGACGGTGACGCTGACGCTGACGGCGAGTCGTCTGTCTTTGTTTCCTCGCTCCACCTCGGCCGA
GACCCAAACAGCAACAGCGACGTCGACGACGAGTATCGAGCCGACGACGAGTCGCCCCTCGGCTTGATTGCTGAT
AACAACTTTTCATCCCCTTCCACCCTTCCGTCCATCGTCAACTTGGCTGCCGATGACACAACCCTTTCACCGCAA
TCGTCGTTGCACTCGAGCCAAAGCATTGCAGACCAATCAACACTTGCAGGCAACGAGTCAGACTCGGGCGAAGAC
TCTGCGGTGCAATTTGTCCACCACAGCTACGACCGCTTGAGATCCTTGAATGCCCTATCTCGAGAGTCCTCACTC
TTTTTGACCGACTCGGAGAATATTCCATCTCCGCAAGAATCCACACAAACTACTGTTTTCGACATGCCGCCTCGG
CAACTGCAAAATCTTCTCAATTCACCAGAGCCGCCACCGCAGCCCCCTGCTTCAAAAGCAAACAAAAGGCGGCGG
CTTGACTCCAGCACAAACAACGCTCAAAATTCAACCTCAGAGGCTCTGGTTTTGCCCCAGCGACCGTCGTTCAAC
GATGCCATCTTTTCCGAGGACACGCTTGATAACGATTCTCAAGCCATGGCAACCATCGATCTCACAGTATCGGCT
GAAGCCATCGAACAGCAATTTAGCAAGCCTGAGCCAGACAAGCGAATCAAGCTGGCTTCCTTTCAGTGCGTCATT
TGCATGGACGACGTAACAGCACTCACCGTCACACACTGTGGCCATCTCTTTTGCCAACAATGCCTTCATTCATCG
CTCCACGTCGAGGCGAACCGCGGCAATTGTCCCATGTGCCGCACAAAGATTGATACCAAGCCCCGTGCTTCTTAC
ACATCAAAGACAAAGGGGTACTGGCCTCTGGAGCTCAAGCTCATGACAGTGACAAAGAAGGGCAAACGCAAGGCC
GATTCGATAAGCTAA
Gene >OphauB2|2627
ATGTCGACGCCGCCCAAGTCTCCCACTCCGCGTTCACGGGACCGCTTCCTAGCTACTCCATCGCCTATTGTCCGG
AGCCAGTGGTGGCCAGACTTGCGTCTGCCTCAATCTTCGTCGCCATCTTCCCAGCATTCTCGTTTTCGTTTTGCC
GCCTTTGACGAGGAGGATTCTCTTGACAGCACCTTGCATGCCTTTGACGATTCTCTTTTGCCTCAGTCTTCGCCT
GGCGAGCAGCAGTCCTATAGCACTGCAGGCTTGCAATCTAATACTTCCGACTCTAGCTTCTCTAGCGGATGGACG
TCTGAAAGCCCCGACGGTGACGCTGACGCTGACGGCGAGTCGTCTGTCTTTGTTTCCTCGCTCCACCTCGGCCGA
GACCCAAACAGCAACAGCGACGTCGACGACGAGTATCGAGCCGACGACGAGTCGCCCCTCGGCTTGATTGCTGAT
AACAACTTTTCATCCCCTTCCACCCTTCCGTCCATCGTCAACTTGGCTGCCGATGACACAACCCTTTCACCGCAA
TCGTCGTTGCACTCGAGCCAAAGCATTGCAGACCAATCAACACTTGCAGGCAACGAGTCAGACTCGGGCGAAGAC
TCTGCGGTGCAATTTGTCCACCACAGCTACGACCGCTTGAGATCCTTGAATGCCCTATCTCGAGAGTCCTCACTC
TTTTTGACCGACTCGGAGAATATTCCATCTCCGCAAGAATCCACACAAACTACTGTTTTCGACATGCCGCCTCGG
CAACTGCAAAATCTTCTCAATTCACCAGAGCCGCCACCGCAGCCCCCTGCTTCAAAAGCAAACAAAAGGCGGCGG
CTTGACTCCAGCACAAACAACGCTCAAAATTCAACCTCAGAGGCTCTGGTTTTGCCCCAGCGACCGTCGTTCAAC
GATGCCATCTTTTCCGAGGACACGCTTGATAACGATTCTCAAGCCATGGCAACCATCGATCTCACAGTATCGGCT
GAAGCCATCGAACAGCAATTTAGCAAGCCTGAGCCAGACAAGCGAATCAAGCTGGCTTCCTTTCAGTGCGTCATT
TGCATGGACGACGTAACAGCACTCACCGTCACACACTGTGGTATGTTGCCCCTCTCCCCCAACTATGCGACGTGG
TCACAGTAGAGAAAACTGCTGACCAACTGAGGGCAGGCCATCTCTTTTGCCAACAATGCCTTCATTCATCGCTCC
ACGTCGAGGCGAACCGCGGCAATTGTCCCATGTGCCGCACAAAGATTGATACCAAGCCCCGTGCTTCTTACACAT
CAAAGACAAAGGGGTACTGGCCTCTGGAGCTCAAGCTCATGACAGTGACAAAGAAGGGCAAACGCAAGGCCGATT
CGATAAGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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