Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|2554
Gene name
Location	Contig_180:23256..24495
Strand	-
Gene length (bp)	1239
Transcript length (bp)	1239
Coding sequence length (bp)	1239
Protein length (aa)	413

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09468	RNase_H2-Ydr279	Ydr279p protein family (RNase H2 complex component) wHTH domain	7.7E-45	117	316
PF17745	Ydr279_N	Ydr279p protein triple barrel domain	6.3E-27	39	114

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94627\|RNH2B_SCHPO	Ribonuclease H2 subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnh202 PE=3 SV=1	36	233	8.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|2554 MPQTRSTKTAASSAKEPPSTASSKHELPAATSPPPRLLVLPKQATPEARIVTLPNPRHGQPARYLVCPETGIYEF TRIAAPSSSPRSWLIEPSCQNLDPQIVMDANLFVATPIDPLFLVLPALVCSDASRTQDGKKRLFLSSDDHLDKLP EESSHLAEMLRWPKTRALLEARMTAICDTVEAGDQVMFRFNEDKIAPIILQKARRMSKDGLPASMEEKFVTRTLE APLSLQKPSVECSQSQPLDAPSGHCQSTATIAEAVTSSTSQQSTAAASVQPLHVDAIPDTLETPDEIAKLQRLRV AFDFICSSYVLPSIVDKMWHLLKESQLVDFSPLDQYLAKIAQLRNEAVVASSLSDYARKRTCDDEEEEARAEKKR RLEEDKKRKAAESRGVKELKKVNISGMKKMSDFFKAK*
Coding	>OphauB2\|2554 ATGCCTCAAACGCGGTCGACAAAGACTGCTGCCAGCAGCGCCAAAGAGCCGCCCAGCACTGCATCCTCCAAACAC GAGCTGCCTGCCGCCACCAGCCCACCACCAAGGCTGCTCGTGCTGCCCAAGCAGGCAACGCCCGAGGCACGCATC GTCACGCTGCCCAACCCGAGACATGGCCAGCCTGCTCGCTATCTCGTCTGTCCAGAAACGGGCATCTATGAATTC ACAAGGATTGCTGCGCCGAGCTCAAGTCCACGAAGCTGGTTAATCGAACCCAGCTGCCAAAACTTGGACCCGCAG ATTGTCATGGATGCAAATCTCTTTGTGGCGACGCCCATTGATCCCCTTTTCCTCGTGCTCCCTGCCTTGGTCTGC TCTGATGCAAGCCGGACCCAAGATGGCAAGAAACGACTCTTTCTCTCAAGCGACGACCATCTCGACAAGCTGCCA GAAGAGTCGTCTCACTTGGCCGAGATGCTCCGCTGGCCCAAGACGCGCGCTCTGCTAGAGGCCAGAATGACGGCC ATTTGCGATACAGTCGAGGCTGGCGACCAAGTCATGTTTCGCTTCAACGAGGACAAGATTGCCCCCATTATTCTC CAAAAGGCACGGAGAATGAGCAAAGACGGTCTGCCCGCAAGCATGGAGGAAAAGTTTGTCACTCGCACTCTCGAG GCGCCCTTGTCACTGCAAAAACCTAGTGTCGAGTGCAGCCAGAGCCAGCCTCTTGATGCTCCATCAGGTCATTGT CAATCCACCGCCACAATAGCAGAAGCCGTCACTTCATCTACCTCGCAGCAATCAACAGCAGCCGCTTCGGTGCAG CCATTACACGTCGATGCCATCCCAGACACACTCGAGACTCCTGACGAAATCGCCAAGCTTCAGCGACTACGCGTT GCTTTTGATTTCATCTGCTCAAGCTACGTGCTGCCGTCAATTGTCGACAAGATGTGGCACCTCCTCAAAGAGTCC CAGCTAGTAGACTTTTCTCCACTCGACCAGTACCTCGCCAAGATTGCCCAGCTACGCAACGAGGCCGTCGTTGCA AGCTCCCTGTCCGACTATGCCAGGAAGCGGACATGCGACGACGAGGAAGAGGAAGCACGCGCAGAAAAGAAGAGA AGACTGGAAGAGGACAAGAAACGCAAGGCGGCCGAGAGTCGCGGCGTCAAGGAGCTTAAAAAGGTCAACATTTCC GGCATGAAAAAGATGAGCGACTTTTTCAAAGCCAAGTGA
Transcript	>OphauB2\|2554 ATGCCTCAAACGCGGTCGACAAAGACTGCTGCCAGCAGCGCCAAAGAGCCGCCCAGCACTGCATCCTCCAAACAC GAGCTGCCTGCCGCCACCAGCCCACCACCAAGGCTGCTCGTGCTGCCCAAGCAGGCAACGCCCGAGGCACGCATC GTCACGCTGCCCAACCCGAGACATGGCCAGCCTGCTCGCTATCTCGTCTGTCCAGAAACGGGCATCTATGAATTC ACAAGGATTGCTGCGCCGAGCTCAAGTCCACGAAGCTGGTTAATCGAACCCAGCTGCCAAAACTTGGACCCGCAG ATTGTCATGGATGCAAATCTCTTTGTGGCGACGCCCATTGATCCCCTTTTCCTCGTGCTCCCTGCCTTGGTCTGC TCTGATGCAAGCCGGACCCAAGATGGCAAGAAACGACTCTTTCTCTCAAGCGACGACCATCTCGACAAGCTGCCA GAAGAGTCGTCTCACTTGGCCGAGATGCTCCGCTGGCCCAAGACGCGCGCTCTGCTAGAGGCCAGAATGACGGCC ATTTGCGATACAGTCGAGGCTGGCGACCAAGTCATGTTTCGCTTCAACGAGGACAAGATTGCCCCCATTATTCTC CAAAAGGCACGGAGAATGAGCAAAGACGGTCTGCCCGCAAGCATGGAGGAAAAGTTTGTCACTCGCACTCTCGAG GCGCCCTTGTCACTGCAAAAACCTAGTGTCGAGTGCAGCCAGAGCCAGCCTCTTGATGCTCCATCAGGTCATTGT CAATCCACCGCCACAATAGCAGAAGCCGTCACTTCATCTACCTCGCAGCAATCAACAGCAGCCGCTTCGGTGCAG CCATTACACGTCGATGCCATCCCAGACACACTCGAGACTCCTGACGAAATCGCCAAGCTTCAGCGACTACGCGTT GCTTTTGATTTCATCTGCTCAAGCTACGTGCTGCCGTCAATTGTCGACAAGATGTGGCACCTCCTCAAAGAGTCC CAGCTAGTAGACTTTTCTCCACTCGACCAGTACCTCGCCAAGATTGCCCAGCTACGCAACGAGGCCGTCGTTGCA AGCTCCCTGTCCGACTATGCCAGGAAGCGGACATGCGACGACGAGGAAGAGGAAGCACGCGCAGAAAAGAAGAGA AGACTGGAAGAGGACAAGAAACGCAAGGCGGCCGAGAGTCGCGGCGTCAAGGAGCTTAAAAAGGTCAACATTTCC GGCATGAAAAAGATGAGCGACTTTTTCAAAGCCAAGTGA
Gene	>OphauB2\|2554 ATGCCTCAAACGCGGTCGACAAAGACTGCTGCCAGCAGCGCCAAAGAGCCGCCCAGCACTGCATCCTCCAAACAC GAGCTGCCTGCCGCCACCAGCCCACCACCAAGGCTGCTCGTGCTGCCCAAGCAGGCAACGCCCGAGGCACGCATC GTCACGCTGCCCAACCCGAGACATGGCCAGCCTGCTCGCTATCTCGTCTGTCCAGAAACGGGCATCTATGAATTC ACAAGGATTGCTGCGCCGAGCTCAAGTCCACGAAGCTGGTTAATCGAACCCAGCTGCCAAAACTTGGACCCGCAG ATTGTCATGGATGCAAATCTCTTTGTGGCGACGCCCATTGATCCCCTTTTCCTCGTGCTCCCTGCCTTGGTCTGC TCTGATGCAAGCCGGACCCAAGATGGCAAGAAACGACTCTTTCTCTCAAGCGACGACCATCTCGACAAGCTGCCA GAAGAGTCGTCTCACTTGGCCGAGATGCTCCGCTGGCCCAAGACGCGCGCTCTGCTAGAGGCCAGAATGACGGCC ATTTGCGATACAGTCGAGGCTGGCGACCAAGTCATGTTTCGCTTCAACGAGGACAAGATTGCCCCCATTATTCTC CAAAAGGCACGGAGAATGAGCAAAGACGGTCTGCCCGCAAGCATGGAGGAAAAGTTTGTCACTCGCACTCTCGAG GCGCCCTTGTCACTGCAAAAACCTAGTGTCGAGTGCAGCCAGAGCCAGCCTCTTGATGCTCCATCAGGTCATTGT CAATCCACCGCCACAATAGCAGAAGCCGTCACTTCATCTACCTCGCAGCAATCAACAGCAGCCGCTTCGGTGCAG CCATTACACGTCGATGCCATCCCAGACACACTCGAGACTCCTGACGAAATCGCCAAGCTTCAGCGACTACGCGTT GCTTTTGATTTCATCTGCTCAAGCTACGTGCTGCCGTCAATTGTCGACAAGATGTGGCACCTCCTCAAAGAGTCC CAGCTAGTAGACTTTTCTCCACTCGACCAGTACCTCGCCAAGATTGCCCAGCTACGCAACGAGGCCGTCGTTGCA AGCTCCCTGTCCGACTATGCCAGGAAGCGGACATGCGACGACGAGGAAGAGGAAGCACGCGCAGAAAAGAAGAGA AGACTGGAAGAGGACAAGAAACGCAAGGCGGCCGAGAGTCGCGGCGTCAAGGAGCTTAAAAAGGTCAACATTTCC GGCATGAAAAAGATGAGCGACTTTTTCAAAGCCAAGTGA

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