© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2522 |
| Gene name | |
| Location | Contig_18:164345..165417 |
| Strand | - |
| Gene length (bp) | 1072 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 951 |
| Protein length (aa) | 317 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04427 | Brix | Brix domain | 6.0E-39 | 35 | 240 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08235|BRX1_YEAST | Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2 | 1 | 286 | 2.0E-114 |
| sp|Q9HGL6|BRX1_SCHPO | Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1 | 1 | 289 | 2.0E-104 |
| sp|Q8UVY2|BRX1_XENLA | Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1 | 22 | 292 | 3.0E-84 |
| sp|Q3SZZ0|BRX1_BOVIN | Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1 | 22 | 290 | 5.0E-82 |
| sp|Q8TDN6|BRX1_HUMAN | Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2 | 22 | 290 | 8.0E-82 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08235|BRX1_YEAST | Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2 | 1 | 286 | 2.0E-114 |
| sp|Q9HGL6|BRX1_SCHPO | Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1 | 1 | 289 | 2.0E-104 |
| sp|Q8UVY2|BRX1_XENLA | Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1 | 22 | 292 | 3.0E-84 |
| sp|Q3SZZ0|BRX1_BOVIN | Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1 | 22 | 290 | 5.0E-82 |
| sp|Q8TDN6|BRX1_HUMAN | Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2 | 22 | 290 | 8.0E-82 |
| sp|Q9DCA5|BRX1_MOUSE | Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3 | 2 | 290 | 8.0E-82 |
| sp|Q5RAN2|BRX1_PONAB | Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1 | 22 | 290 | 2.0E-80 |
| sp|Q4QQT6|BRX1_RAT | Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1 | 22 | 292 | 2.0E-80 |
| sp|Q9VZE6|BRX1_DROME | Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster GN=CG11583 PE=2 SV=2 | 26 | 284 | 1.0E-72 |
| sp|Q54JN0|BRX1_DICDI | Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1 | 27 | 279 | 4.0E-72 |
| sp|P34524|BRX1_CAEEL | Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans GN=K12H4.3 PE=3 SV=1 | 26 | 274 | 7.0E-72 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019843 | rRNA binding | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2522 MAAVYKSLSKGSSQKTEEPIVGAKKNKQRVLILSSRGVTYRHRHLLNDIASMMPHGRKDAKFDSKSKLGELNELA ELYNCNNVLFFEARKGKDLYVWLSKVPNGPTVKMHLQNLHTMEELHFTGNCLKGSRPILSFDAAFDKQPHLRVIK ELFLHTFGVPQGARKSKPFIDHVMGFSVADGKIWVRNYQISEEESLVVKPGSEDAADSAQKKTDSKSRKGSGDTE VKLVEIGPRFVLTPIVIQEGSFGGPIIYENREFISPNQLRSDLRRSKASRHDARTEKTVSRLSRKADLGLRSATY RQRGSKSELDNRVLFS* |
| Coding | >OphauB2|2522 ATGGCTGCCGTCTACAAGTCCCTGTCAAAGGGCAGCTCACAAAAAACTGAGGAACCTATCGTTGGCGCCAAGAAG AACAAGCAAAGAGTGCTGATCCTTTCGTCGAGAGGTGTTACCTACAGGCATCGACACCTCTTGAATGACATTGCG TCTATGATGCCACATGGTCGGAAAGATGCCAAATTTGACTCCAAATCGAAGCTTGGCGAATTGAACGAATTGGCT GAGCTCTACAACTGCAACAACGTCTTATTCTTTGAGGCAAGGAAGGGAAAAGATCTCTACGTTTGGCTTAGCAAA GTGCCCAATGGACCGACGGTCAAGATGCATCTCCAAAACCTTCACACAATGGAAGAGCTTCATTTTACAGGCAAT TGTCTCAAAGGCTCCAGGCCGATCCTTTCGTTCGATGCCGCCTTTGATAAACAGCCCCACCTCCGCGTCATCAAG GAACTCTTCCTGCATACCTTTGGAGTGCCTCAAGGAGCACGAAAGTCGAAACCATTCATCGATCACGTCATGGGC TTCAGCGTGGCTGATGGTAAAATTTGGGTACGGAATTACCAGATTAGCGAGGAAGAAAGCTTGGTAGTCAAGCCA GGATCTGAGGATGCCGCAGATAGCGCACAGAAGAAGACCGATTCCAAGTCTAGAAAAGGAAGTGGTGACACAGAG GTCAAACTCGTCGAGATTGGGCCGCGGTTTGTCCTCACTCCGATAGTGATTCAGGAAGGTTCATTTGGTGGTCCA ATCATCTATGAGAACCGCGAATTTATATCGCCAAATCAGCTAAGGTCGGATCTGCGCCGATCAAAGGCCTCGAGA CATGACGCCAGGACGGAAAAGACGGTATCAAGGTTGTCTAGAAAGGCAGACTTGGGACTGAGATCCGCTACCTAC CGCCAACGGGGATCCAAGAGCGAGCTCGACAATCGGGTTCTGTTTTCATAA |
| Transcript | >OphauB2|2522 ATGGCTGCCGTCTACAAGTCCCTGTCAAAGGGCAGCTCACAAAAAACTGAGGAACCTATCGTTGGCGCCAAGAAG AACAAGCAAAGAGTGCTGATCCTTTCGTCGAGAGGTGTTACCTACAGGCATCGACACCTCTTGAATGACATTGCG TCTATGATGCCACATGGTCGGAAAGATGCCAAATTTGACTCCAAATCGAAGCTTGGCGAATTGAACGAATTGGCT GAGCTCTACAACTGCAACAACGTCTTATTCTTTGAGGCAAGGAAGGGAAAAGATCTCTACGTTTGGCTTAGCAAA GTGCCCAATGGACCGACGGTCAAGATGCATCTCCAAAACCTTCACACAATGGAAGAGCTTCATTTTACAGGCAAT TGTCTCAAAGGCTCCAGGCCGATCCTTTCGTTCGATGCCGCCTTTGATAAACAGCCCCACCTCCGCGTCATCAAG GAACTCTTCCTGCATACCTTTGGAGTGCCTCAAGGAGCACGAAAGTCGAAACCATTCATCGATCACGTCATGGGC TTCAGCGTGGCTGATGGTAAAATTTGGGTACGGAATTACCAGATTAGCGAGGAAGAAAGCTTGGTAGTCAAGCCA GGATCTGAGGATGCCGCAGATAGCGCACAGAAGAAGACCGATTCCAAGTCTAGAAAAGGAAGTGGTGACACAGAG GTCAAACTCGTCGAGATTGGGCCGCGGTTTGTCCTCACTCCGATAGTGATTCAGGAAGGTTCATTTGGTGGTCCA ATCATCTATGAGAACCGCGAATTTATATCGCCAAATCAGCTAAGGTCGGATCTGCGCCGATCAAAGGCCTCGAGA CATGACGCCAGGACGGAAAAGACGGTATCAAGGTTGTCTAGAAAGGCAGACTTGGGACTGAGATCCGCTACCTAC CGCCAACGGGGATCCAAGAGCGAGCTCGACAATCGGGTTCTGTTTTCATAA |
| Gene | >OphauB2|2522 ATGGCTGCCGTCTACAAGTCCCTGTCAAAGGGCAGCTCACAAAAAACTGAGGAACCTATCGTTGGCGCCAAGAAG AACAAGCAAAGAGTGCTGATCCTTTCGTCGAGAGGTGTTACCTACAGGTCAGTCATGGGACATACAGATATTCTT CTTTTGCGGCCCAAGTATTTGCTAACATGGCCCATCAATTCCAGGCATCGACACCTCTTGAATGACATTGCGTCT ATGATGCCACATGGTCGGAAAGATGCCAAATTTGACTCCAAATCGAAGCTTGGCGAATTGAACGAATTGGCTGAG CTCTACAACTGCAACAACGTCTTATTCTTTGAGGCAAGGAAGGGAAAAGATCTCTACGTTTGGCTTAGCAAAGTG CCCAATGGACCGACGGTCAAGATGCATCTCCAAAACCGTAAGCGACATGTTCTTGCCATCTTGCTAGTTTCTGAC GATATCTGCAGTTCACACAATGGAAGAGCTTCATTTTACAGGCAATTGTCTCAAAGGCTCCAGGCCGATCCTTTC GTTCGATGCCGCCTTTGATAAACAGCCCCACCTCCGCGTCATCAAGGAACTCTTCCTGCATACCTTTGGAGTGCC TCAAGGAGCACGAAAGTCGAAACCATTCATCGATCACGTCATGGGCTTCAGCGTGGCTGATGGTAAAATTTGGGT ACGGAATTACCAGATTAGCGAGGAAGAAAGCTTGGTAGTCAAGCCAGGATCTGAGGATGCCGCAGATAGCGCACA GAAGAAGACCGATTCCAAGTCTAGAAAAGGAAGTGGTGACACAGAGGTCAAACTCGTCGAGATTGGGCCGCGGTT TGTCCTCACTCCGATAGTGATTCAGGAAGGTTCATTTGGTGGTCCAATCATCTATGAGAACCGCGAATTTATATC GCCAAATCAGCTAAGGTCGGATCTGCGCCGATCAAAGGCCTCGAGACATGACGCCAGGACGGAAAAGACGGTATC AAGGTTGTCTAGAAAGGCAGACTTGGGACTGAGATCCGCTACCTACCGCCAACGGGGATCCAAGAGCGAGCTCGA CAATCGGGTTCTGTTTTCATAA |