Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2506
Gene name
LocationContig_18:116295..118274
Strand+
Gene length (bp)1979
Transcript length (bp)1914
Coding sequence length (bp)1914
Protein length (aa) 638

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03909 BSD BSD domain 2.5E-13 144 204
PF03909 BSD BSD domain 8.4E-14 223 278
PF08567 PH_TFIIH TFIIH p62 subunit, N-terminal domain 1.0E-24 10 96

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9P5N7|TFB1_NEUCR Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 1 619 0.0E+00
sp|O13745|TFB1_SCHPO RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2 9 566 6.0E-66
sp|P32776|TFB1_YEAST RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 5 558 4.0E-42
sp|Q960E8|TF2H1_DROME General transcription factor IIH subunit 1 OS=Drosophila melanogaster GN=Tfb1 PE=2 SV=1 3 268 9.0E-11
sp|Q9DBA9|TF2H1_MOUSE General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2 11 268 1.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2506
MAIPTGRTLFKKKDGILTLTADRRNLTWTPNTGGPPTISLPVASITNLQQTPDSSPKVMLKVFQKPETGGDAIPY
LFHFNTSEARAEAKALKDVLSTFLTDLRSNEVPRLAGADTPSAAAGSASASMAFASAVNSHPSSTRWFDDDHLKA
DIELQQSLMKKDKSLHQTYVNAVEAKPESLSTAAFNSQFWSTRTNLLRAHAIELGQKRGAYNVLSTVKPRTVDGE
LKLNISVEQVQMILAQHPLIKRIYNENVPKLSEAQFWSRFFLSRLSKQLRGERVSESERPDPLFDKHDVSENTQS
FQSRIIAQSVPHIIDIEANEENQGGFRSGNAKDVEMRPRANIPIVKTLNSLSESIMANVAPSDGSQGDSQGGFDT
LNQLMLRDLQGDGQQERIMLNVREQNRFFSSNDSTTASANARIFAKQNPRQVLETVRASLDHSDAYGTDTTALQA
AIDFDDESDSDEEEQRKSRVGSRAAIKAAEKEVMDGVLQQRSRKYGHAGDATSPMGLSPAMAEKCALAHATTVEF
LHQFWNAFLSGDADRALELQYLAESLKRSVARLAAVADEAEVEREATIRQRKHDIRVHFERTGKRLKWKADMVGG
GRDAVNKLNQPIFKALEKAQDEYARALEAEGMQASTE*
Coding >OphauB2|2506
ATGGCCATTCCCACCGGCCGCACTCTCTTCAAAAAGAAGGATGGCATCCTCACCTTGACGGCGGATCGCCGAAAC
CTGACATGGACGCCAAACACGGGCGGCCCTCCCACGATATCGCTGCCCGTTGCGAGCATCACCAACCTTCAGCAG
ACGCCAGACAGCTCGCCCAAAGTGATGCTCAAGGTTTTCCAAAAGCCAGAAACCGGCGGTGATGCCATCCCGTAT
TTATTCCACTTCAACACTAGCGAAGCCCGAGCAGAAGCCAAAGCCCTCAAGGATGTCCTCTCTACTTTTTTGACC
GATCTGCGAAGCAATGAAGTCCCGCGGCTCGCGGGAGCTGACACTCCTTCTGCCGCCGCCGGCAGTGCCTCAGCC
TCGATGGCTTTTGCCAGCGCTGTCAACTCGCATCCGTCGTCGACGCGTTGGTTTGACGATGACCACCTCAAGGCC
GACATTGAGCTACAGCAATCGCTCATGAAGAAGGACAAGTCGCTTCACCAAACATATGTCAACGCGGTTGAGGCA
AAGCCTGAATCCTTATCCACCGCTGCCTTTAACTCTCAGTTTTGGTCTACACGCACCAATCTTTTGCGCGCTCAC
GCTATTGAACTGGGTCAGAAGAGAGGCGCCTATAATGTACTGTCAACGGTCAAGCCTCGAACTGTTGACGGCGAA
CTCAAGCTTAATATTAGCGTCGAGCAAGTGCAAATGATATTGGCACAGCATCCTCTTATCAAACGCATTTACAAT
GAAAACGTACCCAAGCTTTCAGAAGCCCAGTTTTGGTCCCGTTTCTTTCTCAGCAGACTCTCCAAGCAGCTTCGA
GGCGAGCGCGTCTCGGAATCGGAGCGTCCTGATCCCTTATTCGACAAGCACGACGTGAGCGAAAACACACAGAGC
TTTCAGAGTAGAATCATAGCTCAGAGCGTACCTCACATTATTGACATTGAAGCAAACGAGGAGAACCAAGGGGGT
TTCAGAAGCGGCAATGCCAAGGATGTGGAAATGAGGCCGCGGGCCAACATACCCATTGTCAAGACGCTCAACAGC
CTCAGTGAAAGCATCATGGCCAATGTGGCTCCCTCTGACGGCAGCCAAGGCGACTCGCAGGGAGGCTTTGACACG
TTGAATCAGTTAATGCTACGCGACCTCCAGGGCGACGGCCAACAGGAGCGCATCATGCTCAACGTTCGAGAACAA
AACAGATTCTTCTCGAGTAATGACTCTACGACGGCCTCTGCCAATGCGCGCATCTTTGCCAAGCAGAATCCTAGA
CAAGTTCTCGAAACAGTCCGAGCTTCCCTCGACCACTCGGATGCATATGGCACCGATACCACGGCGCTTCAGGCT
GCCATTGATTTCGACGACGAGAGTGACAGCGACGAAGAAGAGCAGAGAAAGTCGCGCGTCGGCTCCCGCGCAGCA
ATCAAGGCAGCCGAAAAGGAGGTCATGGACGGCGTTCTTCAGCAACGCTCCAGAAAATATGGCCACGCTGGCGAC
GCGACATCCCCCATGGGCCTGTCGCCAGCCATGGCTGAAAAGTGCGCCTTGGCACATGCAACGACTGTCGAGTTT
TTGCACCAGTTTTGGAATGCTTTTCTCTCTGGCGATGCCGACCGTGCCCTTGAGTTGCAGTATCTGGCCGAGTCG
CTCAAGCGCTCCGTCGCCCGTCTGGCGGCCGTGGCTGACGAAGCCGAGGTGGAGCGTGAAGCTACGATTCGCCAG
CGCAAGCATGACATTCGCGTCCACTTTGAACGTACTGGCAAGAGACTCAAGTGGAAGGCCGACATGGTTGGGGGC
GGACGTGATGCCGTGAATAAGCTCAATCAGCCCATTTTCAAGGCTCTGGAAAAGGCGCAGGACGAATACGCCAGG
GCCCTTGAGGCTGAGGGGATGCAGGCTTCTACCGAGTAA
Transcript >OphauB2|2506
ATGGCCATTCCCACCGGCCGCACTCTCTTCAAAAAGAAGGATGGCATCCTCACCTTGACGGCGGATCGCCGAAAC
CTGACATGGACGCCAAACACGGGCGGCCCTCCCACGATATCGCTGCCCGTTGCGAGCATCACCAACCTTCAGCAG
ACGCCAGACAGCTCGCCCAAAGTGATGCTCAAGGTTTTCCAAAAGCCAGAAACCGGCGGTGATGCCATCCCGTAT
TTATTCCACTTCAACACTAGCGAAGCCCGAGCAGAAGCCAAAGCCCTCAAGGATGTCCTCTCTACTTTTTTGACC
GATCTGCGAAGCAATGAAGTCCCGCGGCTCGCGGGAGCTGACACTCCTTCTGCCGCCGCCGGCAGTGCCTCAGCC
TCGATGGCTTTTGCCAGCGCTGTCAACTCGCATCCGTCGTCGACGCGTTGGTTTGACGATGACCACCTCAAGGCC
GACATTGAGCTACAGCAATCGCTCATGAAGAAGGACAAGTCGCTTCACCAAACATATGTCAACGCGGTTGAGGCA
AAGCCTGAATCCTTATCCACCGCTGCCTTTAACTCTCAGTTTTGGTCTACACGCACCAATCTTTTGCGCGCTCAC
GCTATTGAACTGGGTCAGAAGAGAGGCGCCTATAATGTACTGTCAACGGTCAAGCCTCGAACTGTTGACGGCGAA
CTCAAGCTTAATATTAGCGTCGAGCAAGTGCAAATGATATTGGCACAGCATCCTCTTATCAAACGCATTTACAAT
GAAAACGTACCCAAGCTTTCAGAAGCCCAGTTTTGGTCCCGTTTCTTTCTCAGCAGACTCTCCAAGCAGCTTCGA
GGCGAGCGCGTCTCGGAATCGGAGCGTCCTGATCCCTTATTCGACAAGCACGACGTGAGCGAAAACACACAGAGC
TTTCAGAGTAGAATCATAGCTCAGAGCGTACCTCACATTATTGACATTGAAGCAAACGAGGAGAACCAAGGGGGT
TTCAGAAGCGGCAATGCCAAGGATGTGGAAATGAGGCCGCGGGCCAACATACCCATTGTCAAGACGCTCAACAGC
CTCAGTGAAAGCATCATGGCCAATGTGGCTCCCTCTGACGGCAGCCAAGGCGACTCGCAGGGAGGCTTTGACACG
TTGAATCAGTTAATGCTACGCGACCTCCAGGGCGACGGCCAACAGGAGCGCATCATGCTCAACGTTCGAGAACAA
AACAGATTCTTCTCGAGTAATGACTCTACGACGGCCTCTGCCAATGCGCGCATCTTTGCCAAGCAGAATCCTAGA
CAAGTTCTCGAAACAGTCCGAGCTTCCCTCGACCACTCGGATGCATATGGCACCGATACCACGGCGCTTCAGGCT
GCCATTGATTTCGACGACGAGAGTGACAGCGACGAAGAAGAGCAGAGAAAGTCGCGCGTCGGCTCCCGCGCAGCA
ATCAAGGCAGCCGAAAAGGAGGTCATGGACGGCGTTCTTCAGCAACGCTCCAGAAAATATGGCCACGCTGGCGAC
GCGACATCCCCCATGGGCCTGTCGCCAGCCATGGCTGAAAAGTGCGCCTTGGCACATGCAACGACTGTCGAGTTT
TTGCACCAGTTTTGGAATGCTTTTCTCTCTGGCGATGCCGACCGTGCCCTTGAGTTGCAGTATCTGGCCGAGTCG
CTCAAGCGCTCCGTCGCCCGTCTGGCGGCCGTGGCTGACGAAGCCGAGGTGGAGCGTGAAGCTACGATTCGCCAG
CGCAAGCATGACATTCGCGTCCACTTTGAACGTACTGGCAAGAGACTCAAGTGGAAGGCCGACATGGTTGGGGGC
GGACGTGATGCCGTGAATAAGCTCAATCAGCCCATTTTCAAGGCTCTGGAAAAGGCGCAGGACGAATACGCCAGG
GCCCTTGAGGCTGAGGGGATGCAGGCTTCTACCGAGTAA
Gene >OphauB2|2506
ATGGCCATTCCCACCGGCCGCACTCTCTTCAAAAAGAAGGATGGCATCCTCACCTTGACGGCGGATCGCCGAAAC
CTGACATGGACGCCAAACACGGGCGGCCCTCCCACGATATCGCTGCCCGTTGCGAGCATCACCAGCACGTCTCTC
CAAAACCTGTCTCCCTCCTTGTCACGATTGAGCTAACTCTTGGCTCTGCTCTAGACCTTCAGCAGACGCCAGACA
GCTCGCCCAAAGTGATGCTCAAGGTTTTCCAAAAGCCAGAAACCGGCGGTGATGCCATCCCGTATTTATTCCACT
TCAACACTAGCGAAGCCCGAGCAGAAGCCAAAGCCCTCAAGGATGTCCTCTCTACTTTTTTGACCGATCTGCGAA
GCAATGAAGTCCCGCGGCTCGCGGGAGCTGACACTCCTTCTGCCGCCGCCGGCAGTGCCTCAGCCTCGATGGCTT
TTGCCAGCGCTGTCAACTCGCATCCGTCGTCGACGCGTTGGTTTGACGATGACCACCTCAAGGCCGACATTGAGC
TACAGCAATCGCTCATGAAGAAGGACAAGTCGCTTCACCAAACATATGTCAACGCGGTTGAGGCAAAGCCTGAAT
CCTTATCCACCGCTGCCTTTAACTCTCAGTTTTGGTCTACACGCACCAATCTTTTGCGCGCTCACGCTATTGAAC
TGGGTCAGAAGAGAGGCGCCTATAATGTACTGTCAACGGTCAAGCCTCGAACTGTTGACGGCGAACTCAAGCTTA
ATATTAGCGTCGAGCAAGTGCAAATGATATTGGCACAGCATCCTCTTATCAAACGCATTTACAATGAAAACGTAC
CCAAGCTTTCAGAAGCCCAGTTTTGGTCCCGTTTCTTTCTCAGCAGACTCTCCAAGCAGCTTCGAGGCGAGCGCG
TCTCGGAATCGGAGCGTCCTGATCCCTTATTCGACAAGCACGACGTGAGCGAAAACACACAGAGCTTTCAGAGTA
GAATCATAGCTCAGAGCGTACCTCACATTATTGACATTGAAGCAAACGAGGAGAACCAAGGGGGTTTCAGAAGCG
GCAATGCCAAGGATGTGGAAATGAGGCCGCGGGCCAACATACCCATTGTCAAGACGCTCAACAGCCTCAGTGAAA
GCATCATGGCCAATGTGGCTCCCTCTGACGGCAGCCAAGGCGACTCGCAGGGAGGCTTTGACACGTTGAATCAGT
TAATGCTACGCGACCTCCAGGGCGACGGCCAACAGGAGCGCATCATGCTCAACGTTCGAGAACAAAACAGATTCT
TCTCGAGTAATGACTCTACGACGGCCTCTGCCAATGCGCGCATCTTTGCCAAGCAGAATCCTAGACAAGTTCTCG
AAACAGTCCGAGCTTCCCTCGACCACTCGGATGCATATGGCACCGATACCACGGCGCTTCAGGCTGCCATTGATT
TCGACGACGAGAGTGACAGCGACGAAGAAGAGCAGAGAAAGTCGCGCGTCGGCTCCCGCGCAGCAATCAAGGCAG
CCGAAAAGGAGGTCATGGACGGCGTTCTTCAGCAACGCTCCAGAAAATATGGCCACGCTGGCGACGCGACATCCC
CCATGGGCCTGTCGCCAGCCATGGCTGAAAAGTGCGCCTTGGCACATGCAACGACTGTCGAGTTTTTGCACCAGT
TTTGGAATGCTTTTCTCTCTGGCGATGCCGACCGTGCCCTTGAGTTGCAGTATCTGGCCGAGTCGCTCAAGCGCT
CCGTCGCCCGTCTGGCGGCCGTGGCTGACGAAGCCGAGGTGGAGCGTGAAGCTACGATTCGCCAGCGCAAGCATG
ACATTCGCGTCCACTTTGAACGTACTGGCAAGAGACTCAAGTGGAAGGCCGACATGGTTGGGGGCGGACGTGATG
CCGTGAATAAGCTCAATCAGCCCATTTTCAAGGCTCTGGAAAAGGCGCAGGACGAATACGCCAGGGCCCTTGAGG
CTGAGGGGATGCAGGCTTCTACCGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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