© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2459 |
| Gene name | |
| Location | Contig_179:9210..10827 |
| Strand | + |
| Gene length (bp) | 1617 |
| Transcript length (bp) | 1359 |
| Coding sequence length (bp) | 1359 |
| Protein length (aa) | 453 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01148 | CTP_transf_1 | Cytidylyltransferase family | 4.8E-79 | 66 | 396 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 30 | 435 | 1.0E-152 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 11 | 437 | 2.0E-137 |
| sp|O49639|CDS2_ARATH | Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1 | 27 | 434 | 8.0E-107 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 25 | 434 | 2.0E-106 |
| sp|Q99L43|CDS2_MOUSE | Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 | 1 | 441 | 2.0E-103 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 30 | 435 | 1.0E-152 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 11 | 437 | 2.0E-137 |
| sp|O49639|CDS2_ARATH | Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1 | 27 | 434 | 8.0E-107 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 25 | 434 | 2.0E-106 |
| sp|Q99L43|CDS2_MOUSE | Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 | 1 | 441 | 2.0E-103 |
| sp|A0JNC1|CDS2_BOVIN | Phosphatidate cytidylyltransferase 2 OS=Bos taurus GN=CDS2 PE=2 SV=1 | 5 | 437 | 2.0E-102 |
| sp|O95674|CDS2_HUMAN | Phosphatidate cytidylyltransferase 2 OS=Homo sapiens GN=CDS2 PE=1 SV=1 | 5 | 437 | 2.0E-101 |
| sp|Q91XU8|CDS2_RAT | Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus GN=Cds2 PE=1 SV=1 | 5 | 437 | 1.0E-99 |
| sp|P98191|CDS1_MOUSE | Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=1 SV=2 | 63 | 443 | 6.0E-99 |
| sp|Q92903|CDS1_HUMAN | Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 | 5 | 443 | 9.0E-99 |
| sp|O35052|CDS1_RAT | Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 | 60 | 437 | 1.0E-98 |
| sp|O04940|CDS1_SOLTU | Phosphatidate cytidylyltransferase 1 OS=Solanum tuberosum GN=CDS1 PE=1 SV=1 | 13 | 434 | 1.0E-96 |
| sp|Q1PE48|CDS3_ARATH | Phosphatidate cytidylyltransferase 3 OS=Arabidopsis thaliana GN=CDS3 PE=1 SV=1 | 15 | 434 | 4.0E-90 |
| sp|P56079|CDSA_DROME | Phosphatidate cytidylyltransferase, photoreceptor-specific OS=Drosophila melanogaster GN=CdsA PE=1 SV=2 | 3 | 433 | 1.0E-87 |
| sp|P53439|CDSA_CAEEL | Phosphatidate cytidylyltransferase OS=Caenorhabditis elegans GN=cdgs-1 PE=3 SV=2 | 55 | 437 | 3.0E-87 |
| sp|Q55D90|CDSA_DICDI | Probable phosphatidate cytidylyltransferase OS=Dictyostelium discoideum GN=cdsA PE=3 SV=1 | 53 | 429 | 8.0E-78 |
| sp|Q95ZE3|CDS1_ENCCU | Phosphatidate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDS1 PE=3 SV=1 | 163 | 433 | 2.0E-45 |
| sp|Q9ZDA8|CDSA_RICPR | Phosphatidate cytidylyltransferase OS=Rickettsia prowazekii (strain Madrid E) GN=cdsA PE=3 SV=1 | 231 | 380 | 1.0E-08 |
| sp|P75160|CDSA_MYCPN | Putative phosphatidate cytidylyltransferase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=cdsA PE=3 SV=1 | 212 | 380 | 5.0E-08 |
| sp|Q92I31|CDSA_RICCN | Phosphatidate cytidylyltransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=cdsA PE=3 SV=1 | 231 | 380 | 6.0E-08 |
| sp|Q4ULR7|CDSA_RICFE | Phosphatidate cytidylyltransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=cdsA PE=3 SV=1 | 231 | 380 | 6.0E-07 |
| sp|Q49433|CDSA_MYCGE | Putative phosphatidate cytidylyltransferase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=cdsA PE=3 SV=1 | 212 | 378 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 68 | 85 | 17 |
| 2 | 89 | 111 | 22 |
| 3 | 124 | 143 | 19 |
| 4 | 158 | 180 | 22 |
| 5 | 192 | 210 | 18 |
| 6 | 220 | 242 | 22 |
| 7 | 255 | 277 | 22 |
| 8 | 333 | 355 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2459 MGRVRRGVRFPHGGPDGRRASFSGSEDGATSPSRLRSKSQGQLAPVQEKHSTPEEEYQKKKANFMTRTFWTFSML AMFFAALFMGHIYIIAIVTAIQIISFNEVIAIVNVPSRARSIRSTKSLNWYWLATTMYFLYGESVIYYFKHIVLV DKVLLPLATHHRFISFVLYVFGFVCFVATLKAGHYRFQFTNFAWTHMSLYLIVFQAHFVINNIFEGMIWFFLPAA LVITNDIFAYICGITFGRTQLIKLSPKKTVEGFVGAWIMTILFAMVLVTLMIRSKYFICPVNDLGANIFTGLECD PNPVFLPHTYHLPHFFFFPQSSSISFTFAPMQIHALVIATFASLIAPFGGFFASGLKRTFKIKDFGDSIPGHGGM TDRMDCQFIMGAFAYMYYHTFVEVHKVTMGSVLEKAITSLSPDEQIELVRSMSRYLSNQGVVPESVLVCIDKAVG RP* |
| Coding | >OphauB2|2459 ATGGGCAGGGTCCGGCGAGGCGTCAGGTTCCCCCATGGCGGCCCCGACGGCCGTCGTGCTAGCTTCAGCGGCAGC GAGGACGGCGCCACGTCGCCTTCGCGCCTCCGCTCCAAGTCGCAGGGCCAGCTGGCCCCCGTGCAAGAGAAGCAT TCCACGCCCGAGGAGGAATACCAAAAAAAAAAGGCAAACTTCATGACGCGCACCTTTTGGACCTTTAGCATGCTT GCCATGTTCTTTGCTGCCCTCTTCATGGGCCACATCTACATCATCGCCATTGTCACCGCCATTCAAATCATATCC TTCAACGAAGTCATTGCCATTGTCAATGTCCCCAGCCGCGCCCGCTCCATCCGCTCCACAAAGAGCCTCAACTGG TACTGGCTGGCCACCACCATGTACTTTCTCTACGGCGAAAGCGTCATCTACTACTTCAAGCACATTGTCCTTGTC GACAAGGTGCTGCTGCCCCTGGCCACCCACCATCGCTTCATCAGCTTTGTCCTCTATGTCTTTGGCTTCGTTTGC TTCGTCGCCACTCTCAAGGCCGGCCACTACCGCTTCCAGTTTACAAACTTTGCCTGGACGCACATGTCGCTCTAT CTCATCGTCTTCCAGGCTCACTTTGTTATTAACAACATCTTTGAGGGCATGATTTGGTTCTTCCTGCCCGCTGCT CTCGTCATTACCAATGACATCTTTGCCTATATTTGCGGCATCACCTTTGGCCGTACCCAGCTCATCAAGCTCTCG CCCAAGAAGACGGTTGAAGGCTTTGTTGGAGCTTGGATCATGACTATTCTCTTCGCCATGGTGCTCGTCACGCTC ATGATTCGCTCCAAGTATTTTATTTGCCCTGTAAATGATCTCGGCGCCAACATCTTCACCGGCCTCGAGTGCGAC CCCAATCCCGTCTTCCTGCCTCACACCTACCACCTGCCTCACTTCTTCTTCTTTCCCCAAAGCTCTTCCATCTCC TTCACCTTTGCTCCCATGCAGATCCATGCCCTCGTCATTGCCACGTTTGCATCCCTCATCGCTCCCTTTGGTGGC TTCTTTGCTTCGGGTCTCAAACGCACCTTTAAGATCAAGGACTTTGGCGACTCGATCCCCGGTCACGGCGGCATG ACGGACCGTATGGACTGCCAGTTCATCATGGGCGCATTTGCCTACATGTACTACCATACCTTTGTCGAAGTGCAC AAGGTCACCATGGGGTCCGTCCTCGAAAAGGCCATTACCAGCCTGAGCCCTGATGAGCAGATTGAGCTGGTGCGG AGCATGTCGCGCTATCTTAGCAACCAGGGCGTCGTGCCCGAATCTGTTCTCGTGTGCATTGACAAGGCTGTTGGC AGGCCGTGA |
| Transcript | >OphauB2|2459 ATGGGCAGGGTCCGGCGAGGCGTCAGGTTCCCCCATGGCGGCCCCGACGGCCGTCGTGCTAGCTTCAGCGGCAGC GAGGACGGCGCCACGTCGCCTTCGCGCCTCCGCTCCAAGTCGCAGGGCCAGCTGGCCCCCGTGCAAGAGAAGCAT TCCACGCCCGAGGAGGAATACCAAAAAAAAAAGGCAAACTTCATGACGCGCACCTTTTGGACCTTTAGCATGCTT GCCATGTTCTTTGCTGCCCTCTTCATGGGCCACATCTACATCATCGCCATTGTCACCGCCATTCAAATCATATCC TTCAACGAAGTCATTGCCATTGTCAATGTCCCCAGCCGCGCCCGCTCCATCCGCTCCACAAAGAGCCTCAACTGG TACTGGCTGGCCACCACCATGTACTTTCTCTACGGCGAAAGCGTCATCTACTACTTCAAGCACATTGTCCTTGTC GACAAGGTGCTGCTGCCCCTGGCCACCCACCATCGCTTCATCAGCTTTGTCCTCTATGTCTTTGGCTTCGTTTGC TTCGTCGCCACTCTCAAGGCCGGCCACTACCGCTTCCAGTTTACAAACTTTGCCTGGACGCACATGTCGCTCTAT CTCATCGTCTTCCAGGCTCACTTTGTTATTAACAACATCTTTGAGGGCATGATTTGGTTCTTCCTGCCCGCTGCT CTCGTCATTACCAATGACATCTTTGCCTATATTTGCGGCATCACCTTTGGCCGTACCCAGCTCATCAAGCTCTCG CCCAAGAAGACGGTTGAAGGCTTTGTTGGAGCTTGGATCATGACTATTCTCTTCGCCATGGTGCTCGTCACGCTC ATGATTCGCTCCAAGTATTTTATTTGCCCTGTAAATGATCTCGGCGCCAACATCTTCACCGGCCTCGAGTGCGAC CCCAATCCCGTCTTCCTGCCTCACACCTACCACCTGCCTCACTTCTTCTTCTTTCCCCAAAGCTCTTCCATCTCC TTCACCTTTGCTCCCATGCAGATCCATGCCCTCGTCATTGCCACGTTTGCATCCCTCATCGCTCCCTTTGGTGGC TTCTTTGCTTCGGGTCTCAAACGCACCTTTAAGATCAAGGACTTTGGCGACTCGATCCCCGGTCACGGCGGCATG ACGGACCGTATGGACTGCCAGTTCATCATGGGCGCATTTGCCTACATGTACTACCATACCTTTGTCGAAGTGCAC AAGGTCACCATGGGGTCCGTCCTCGAAAAGGCCATTACCAGCCTGAGCCCTGATGAGCAGATTGAGCTGGTGCGG AGCATGTCGCGCTATCTTAGCAACCAGGGCGTCGTGCCCGAATCTGTTCTCGTGTGCATTGACAAGGCTGTTGGC AGGCCGTGA |
| Gene | >OphauB2|2459 ATGGGCAGGGTCCGGCGAGGCGTCAGGTTCCCCCATGGCGGCCCCGACGGCCGTCGTGCTAGCTTCAGCGGCAGC GAGGACGGCGCCACGTCGCCTTCGCGCCTCCGCTCCAAGTCGCAGGGCCAGCTGGCCCCCGTGCAAGAGGTCGCT CCTCCAAAGCTGCCGCGCCTCTGCTGTCCGCCCTGGCTGACCCGACTCTCTAGCAGAAGCATTCCACGCCCGAGG AGGAATACCAAAAAAAAAAGGCAAACTTCATGACGCGCACCTTTTGGACCTTTAGCATGCTTGCCATGTTCTTTG CTGCCCTCTTCATGGGCCACATCTACATCATCGCCATTGTCACCGCCATTCAAATCATATCCTTCAACGAAGTCA TTGCCATTGTCAATGTCCCCAGCCGCGCCCGCTCCATCCGCTCCACAAAGAGCCTCAACTGGTACTGGCTGGCCA CCACCATGTACTTTCTCTACGGCGAAAGCGTCATCTACTACTTCAAGCACATTGTCCTTGTCGACAAGGTGCTGC TGCCCCTGGCCACCCACCATCGCTTCATCAGCTTTGTCCTCTATGTCTTTGGTCAGTCCTCTTGTCTACCGTCCC CTCCCTATGCGCTCATGTTTGCTGCCAGGCTTCGTTTGCTTCGTCGCCACTCTCAAGGCCGGCCACTACCGCTTC CAGTTTACAAACTTTGCCTGGACGCACATGTCGCTCTATCTCATCGTCTTCCAGGCTCACTTTGTTATTAACAAC ATCTTTGAGGGCATGATTTGGTTCTTCCTGCCCGCTGCTCTCGTCATTACCAATGACATCTTTGCCTATATTTGC GGCATCACCTTTGGCCGTACCCAGCTCATCAAGCTCTCGCCCAAGAAGACGGTTGAAGGCTTTGTTGGAGCTTGG ATCATGACTATTCTCTTCGCCATGGTGCTCGTCACGCTCATGATTCGCTCCAAGTATTTTATTTGCCCTGTAAAT GTGGGTCATGTATTCCCCCTCTTGCTCCCCCCTCTCTCTATTGCTCATGTTGCTGACCTTTACTTCAAGGATCTC GGCGCCAACATCTTCACCGGCCTCGAGTGCGACCCCAATCCCGTCTTCCTGCCTCACACCTACCACCTGCCTCAC TTCTTCTTCTTTCCCCAAAGCTCTTCCATCTCCTTCACCTTTGCTCCCATGCAGATCCATGCCCTCGTCATTGCC ACGTTTGCATCCCTCATCGCTCCCTTTGGTGGCTTCTTTGCTTCGGGTCTCAAACGCACCTTTAAGATCAAGGAC TTTGGCGACTCGATCCCCGGTCACGGCGGCATGACGGACCGTATGGACTGCCAGTTCATCATGGGCGCATTTGCC TACATGTACTACCATACCTTTGTCGAAGTGCACAAGGTCACCATGGGGTCCGTCCTCGAAAAGGCCATTACCAGC CTGAGCCCTGATGAGCAGATTGAGCTGGTGCGGAGCATGTCGCGCTATCTTAGCAACCAGGGCGTCGTGCCCGAA TCTGTAAGCAGCGCTTGATTCTCCTCCACCATGGCCTGACATGTATACCAAGAGGCTAATAAGTTTGTCCGTCTA CAGGTTCTCGTGTGCATTGACAAGGCTGTTGGCAGGCCGTGA |