© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2451 |
| Gene name | |
| Location | Contig_178:29614..31344 |
| Strand | - |
| Gene length (bp) | 1730 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05743 | UEV | UEV domain | 1.5E-38 | 25 | 147 |
| PF09454 | Vps23_core | Vps23 core domain | 3.9E-21 | 445 | 508 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99816|TS101_HUMAN | Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2 | 15 | 150 | 4.0E-26 |
| sp|Q6IRE4|TS101_RAT | Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1 | 1 | 150 | 2.0E-25 |
| sp|Q61187|TS101_MOUSE | Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2 | 1 | 150 | 2.0E-25 |
| sp|Q66KB7|UEVLD_XENTR | Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1 | 3 | 156 | 9.0E-21 |
| sp|Q9LHG8|ELC_ARATH | Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1 | 33 | 147 | 1.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99816|TS101_HUMAN | Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2 | 15 | 150 | 4.0E-26 |
| sp|Q6IRE4|TS101_RAT | Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1 | 1 | 150 | 2.0E-25 |
| sp|Q61187|TS101_MOUSE | Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2 | 1 | 150 | 2.0E-25 |
| sp|Q66KB7|UEVLD_XENTR | Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1 | 3 | 156 | 9.0E-21 |
| sp|Q9LHG8|ELC_ARATH | Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1 | 33 | 147 | 1.0E-20 |
| sp|Q9FFY6|ELCL_ARATH | Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1 | 33 | 147 | 6.0E-19 |
| sp|Q8IX04|UEVLD_HUMAN | Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2 | 36 | 156 | 1.0E-17 |
| sp|Q3U1V6|UEVLD_MOUSE | Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=1 SV=1 | 36 | 171 | 2.0E-16 |
| sp|Q6DBY5|UEVLD_DANRE | Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1 | 26 | 152 | 4.0E-15 |
| sp|Q54LJ3|TS101_DICDI | ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1 | 24 | 131 | 3.0E-14 |
| sp|P25604|STP22_YEAST | Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1 SV=3 | 7 | 121 | 1.0E-11 |
| sp|Q99816|TS101_HUMAN | Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2 | 380 | 516 | 3.0E-10 |
| sp|Q6IRE4|TS101_RAT | Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1 | 380 | 516 | 4.0E-10 |
| sp|Q61187|TS101_MOUSE | Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2 | 380 | 516 | 4.0E-10 |
| sp|Q54LJ3|TS101_DICDI | ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1 | 411 | 509 | 1.0E-06 |
| sp|P25604|STP22_YEAST | Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1 SV=3 | 435 | 509 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015031 | protein transport | Yes |
| GO:0036211 | protein modification process | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0051641 | cellular localization | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0051179 | localization | No |
| GO:0008104 | protein localization | No |
| GO:0006810 | transport | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2451 MPVQQHVLNWLYSVLTSEYIDVNRTYNDVARALNRFPSLSPRTDVHTFPNGSSALLLHLSGTLPVVFRGSTYRFP VSIWVPHAYPREPPLIYVTPTESMMVRPGQHVDPQGQVYHPYLARWTDFWDKSTLEDFIAVLSDVFAKEPPVISR QAQRQALNTQPTPTPPPVPPLPPEMVPKQPHQPQDQPHQPPPPPPKQHADAATPPAAPRSTHVTSEATLTQVAVP SRYDSVPPLPTETNFASRPDLRFQTQVHREAEAQNLHQPSSHVPVEQQSHSIPIQPPLTQAMHGPPGYMQPQGQW QPQESWRPGWAATPTSRPDTRVQPAPPPPNILDEPLTLEVPAEATIAPPPIPPNPEKDALLRQLGQTLASMRLSS RQQNEASMAGLKAQRTAMQKASVALQGEMNQLMQLSQMLTSNTSILHEALHKADGVIENSRHHPEPNIDELLVAP TVVSNQLYALVAEERALGDAIFMLGRAVEKGRISPAVFAKMTRTLAREWYLKKALVRKIAQGMGLSR* |
| Coding | >OphauB2|2451 ATGCCCGTCCAGCAACATGTGTTGAACTGGCTCTATAGCGTCCTCACGAGCGAGTACATCGACGTGAATCGCACC TACAATGACGTTGCACGTGCCCTGAATCGTTTCCCATCTCTTTCGCCGCGGACAGACGTACACACTTTTCCAAAT GGCTCCAGCGCTCTGCTGCTTCATCTATCAGGAACCCTGCCCGTCGTTTTTCGAGGCAGCACCTATCGATTTCCG GTGTCAATATGGGTGCCGCATGCCTATCCGCGCGAGCCGCCTCTTATATATGTGACGCCGACTGAATCCATGATG GTCCGTCCGGGTCAGCACGTTGACCCTCAAGGTCAAGTCTACCACCCATATCTGGCCCGATGGACCGACTTCTGG GATAAATCAACACTCGAAGACTTTATCGCAGTTCTCTCAGACGTTTTCGCGAAGGAACCCCCAGTCATTTCTCGA CAGGCCCAAAGACAAGCTTTGAATACACAACCTACACCAACACCGCCTCCTGTGCCGCCGTTACCACCTGAAATG GTCCCCAAACAGCCTCACCAACCCCAAGACCAGCCTCATCAGCCGCCTCCACCTCCACCGAAGCAGCACGCAGAC GCTGCTACTCCCCCTGCTGCTCCACGATCAACACATGTCACATCGGAGGCGACTTTGACGCAAGTAGCAGTACCC TCGAGATACGACTCAGTTCCTCCTCTACCTACAGAAACAAATTTCGCGAGCAGACCCGATCTTCGTTTCCAGACT CAGGTGCATCGCGAAGCTGAAGCTCAAAATTTACACCAGCCCTCGAGCCATGTTCCAGTGGAGCAACAATCACAT TCGATCCCGATACAACCGCCTCTGACACAGGCGATGCATGGTCCTCCAGGCTATATGCAGCCTCAAGGTCAATGG CAACCTCAAGAAAGCTGGCGGCCTGGATGGGCTGCAACGCCAACATCGAGGCCTGATACGCGAGTTCAGCCAGCG CCTCCACCACCAAACATTCTTGATGAGCCATTGACATTGGAAGTACCCGCAGAGGCGACGATAGCACCGCCACCC ATTCCCCCTAACCCTGAAAAAGACGCATTACTGCGACAACTGGGGCAGACCCTAGCGTCGATGCGGCTGAGCAGC AGACAGCAGAATGAAGCGAGCATGGCAGGGCTCAAGGCTCAGCGGACAGCAATGCAAAAGGCCTCTGTGGCTCTG CAGGGCGAAATGAACCAGCTGATGCAGCTTTCGCAGATGCTAACCTCCAACACGAGCATCTTGCACGAAGCGCTG CACAAGGCAGACGGTGTAATCGAGAACTCGCGTCATCATCCAGAGCCAAATATTGACGAGCTTTTGGTGGCACCG ACGGTGGTGTCGAATCAGCTCTATGCGCTTGTGGCAGAGGAGCGGGCCTTGGGCGACGCCATTTTCATGCTGGGA CGAGCAGTAGAGAAGGGGCGAATCTCGCCGGCAGTGTTTGCGAAAATGACGCGGACCTTGGCAAGGGAGTGGTAT TTGAAGAAGGCATTGGTGCGCAAGATTGCGCAAGGGATGGGCCTCAGCCGATAG |
| Transcript | >OphauB2|2451 ATGCCCGTCCAGCAACATGTGTTGAACTGGCTCTATAGCGTCCTCACGAGCGAGTACATCGACGTGAATCGCACC TACAATGACGTTGCACGTGCCCTGAATCGTTTCCCATCTCTTTCGCCGCGGACAGACGTACACACTTTTCCAAAT GGCTCCAGCGCTCTGCTGCTTCATCTATCAGGAACCCTGCCCGTCGTTTTTCGAGGCAGCACCTATCGATTTCCG GTGTCAATATGGGTGCCGCATGCCTATCCGCGCGAGCCGCCTCTTATATATGTGACGCCGACTGAATCCATGATG GTCCGTCCGGGTCAGCACGTTGACCCTCAAGGTCAAGTCTACCACCCATATCTGGCCCGATGGACCGACTTCTGG GATAAATCAACACTCGAAGACTTTATCGCAGTTCTCTCAGACGTTTTCGCGAAGGAACCCCCAGTCATTTCTCGA CAGGCCCAAAGACAAGCTTTGAATACACAACCTACACCAACACCGCCTCCTGTGCCGCCGTTACCACCTGAAATG GTCCCCAAACAGCCTCACCAACCCCAAGACCAGCCTCATCAGCCGCCTCCACCTCCACCGAAGCAGCACGCAGAC GCTGCTACTCCCCCTGCTGCTCCACGATCAACACATGTCACATCGGAGGCGACTTTGACGCAAGTAGCAGTACCC TCGAGATACGACTCAGTTCCTCCTCTACCTACAGAAACAAATTTCGCGAGCAGACCCGATCTTCGTTTCCAGACT CAGGTGCATCGCGAAGCTGAAGCTCAAAATTTACACCAGCCCTCGAGCCATGTTCCAGTGGAGCAACAATCACAT TCGATCCCGATACAACCGCCTCTGACACAGGCGATGCATGGTCCTCCAGGCTATATGCAGCCTCAAGGTCAATGG CAACCTCAAGAAAGCTGGCGGCCTGGATGGGCTGCAACGCCAACATCGAGGCCTGATACGCGAGTTCAGCCAGCG CCTCCACCACCAAACATTCTTGATGAGCCATTGACATTGGAAGTACCCGCAGAGGCGACGATAGCACCGCCACCC ATTCCCCCTAACCCTGAAAAAGACGCATTACTGCGACAACTGGGGCAGACCCTAGCGTCGATGCGGCTGAGCAGC AGACAGCAGAATGAAGCGAGCATGGCAGGGCTCAAGGCTCAGCGGACAGCAATGCAAAAGGCCTCTGTGGCTCTG CAGGGCGAAATGAACCAGCTGATGCAGCTTTCGCAGATGCTAACCTCCAACACGAGCATCTTGCACGAAGCGCTG CACAAGGCAGACGGTGTAATCGAGAACTCGCGTCATCATCCAGAGCCAAATATTGACGAGCTTTTGGTGGCACCG ACGGTGGTGTCGAATCAGCTCTATGCGCTTGTGGCAGAGGAGCGGGCCTTGGGCGACGCCATTTTCATGCTGGGA CGAGCAGTAGAGAAGGGGCGAATCTCGCCGGCAGTGTTTGCGAAAATGACGCGGACCTTGGCAAGGGAGTGGTAT TTGAAGAAGGCATTGGTGCGCAAGATTGCGCAAGGGATGGGCCTCAGCCGATAG |
| Gene | >OphauB2|2451 ATGCCCGTCCAGCAACATGTGTTGAACTGGCTCTATAGCGTCCTCACGAGCGTACGTACACTGACATGGGATTCA AGACTGGCGCTGACGTTGTCATGACAGGAGTACATCGACGTGAATCGCACCTACAATGACGTTGCACGTGCCCTG AATCGTTTCCCATCTCTTTCGCCGCGGACAGACGTACACAGTAGAAATTTCCCATTGGATTGCCTGGTACGCAAT TATGGAAGAAAGCGCTGACTTGTTGCCACAGCTTTTCCAAATGGCTCCAGCGCTCTGCTGCTTCATCTATCAGGA ACCCTGCCCGTCGTTTTTCGAGGCAGCACCTATCGATTTCCGGTGTCAATATGGGTGCCGCATGCCTATCCGCGC GAGCCGCCTCTTATATATGTGACGCCGACTGAATCCATGATGGTCCGTCCGGGTCAGCACGTTGACCCTCAAGGT CAAGTCTACCACCCATATCTGGCCCGATGGACCGACTTCTGGGATGTAAGTATCGACGAGGAGAAATAGGCCCTG TATCGAGCCGACTGCTCATCCACTTATAGAAATCAACACTCGAAGACTTTATCGCAGTTCTCTCAGACGTTTTCG CGAAGGAACCCCCAGTCATTTCTCGACAGGCCCAAAGACAAGCTTTGAATACACAACCTACACCAACACCGCCTC CTGTGCCGCCGTTACCACCTGAAATGGTCCCCAAACAGCCTCACCAACCCCAAGACCAGCCTCATCAGCCGCCTC CACCTCCACCGAAGCAGCACGCAGACGCTGCTACTCCCCCTGCTGCTCCACGATCAACACATGTCACATCGGAGG CGACTTTGACGCAAGTAGCAGTACCCTCGAGATACGACTCAGTTCCTCCTCTACCTACAGAAACAAATTTCGCGA GCAGACCCGATCTTCGTTTCCAGACTCAGGTGCATCGCGAAGCTGAAGCTCAAAATTTACACCAGCCCTCGAGCC ATGTTCCAGTGGAGCAACAATCACATTCGATCCCGATACAACCGCCTCTGACACAGGCGATGCATGGTCCTCCAG GCTATATGCAGCCTCAAGGTCAATGGCAACCTCAAGAAAGCTGGCGGCCTGGATGGGCTGCAACGCCAACATCGA GGCCTGATACGCGAGTTCAGCCAGCGCCTCCACCACCAAACATTCTTGATGAGCCATTGACATTGGAAGTACCCG CAGAGGCGACGATAGCACCGCCACCCATTCCCCCTAACCCTGAAAAAGACGCATTACTGCGACAACTGGGGCAGA CCCTAGCGTCGATGCGGCTGAGCAGCAGACAGCAGAATGAAGCGAGCATGGCAGGGCTCAAGGCTCAGCGGACAG CAATGCAAAAGGCCTCTGTGGCTCTGCAGGGCGAAATGAACCAGCTGATGCAGCTTTCGCAGATGCTAACCTCCA ACACGAGCATCTTGCACGAAGCGCTGCACAAGGCAGACGGTGTAATCGAGAACTCGCGTCATCATCCAGAGCCAA ATATTGACGAGCTTTTGGTGGCACCGACGGTGGTGTCGAATCAGCTCTATGCGCTTGTGGCAGAGGAGCGGGCCT TGGGCGACGCCATTTTCATGCTGGGACGAGCAGTAGAGAAGGGGCGAATCTCGCCGGCAGTGTTTGCGAAAATGA CGCGGACCTTGGCAAGGGAGTGGTATTTGAAGAAGGCATTGGTGCGCAAGATTGCGCAAGGGATGGGCCTCAGCC GATAG |