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| Protein ID | OphauB2|2283 |
| Gene name | |
| Location | Contig_17:142798..143520 |
| Strand | + |
| Gene length (bp) | 722 |
| Transcript length (bp) | 606 |
| Coding sequence length (bp) | 606 |
| Protein length (aa) | 202 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.1E-10 | 29 | 101 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.7E-09 | 14 | 114 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7LL14|RU2B_SCHPO | Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 | 27 | 115 | 2.0E-28 |
| sp|Q54J05|RU2B_DICDI | U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 | 25 | 119 | 3.0E-28 |
| sp|Q9CQI7|RU2B_MOUSE | U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 | 25 | 120 | 1.0E-27 |
| sp|P08579|RU2B_HUMAN | U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 | 25 | 120 | 2.0E-27 |
| sp|O22922|RU2B1_ARATH | U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 | 25 | 119 | 3.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7LL14|RU2B_SCHPO | Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 | 27 | 115 | 2.0E-28 |
| sp|Q54J05|RU2B_DICDI | U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 | 25 | 119 | 3.0E-28 |
| sp|Q9CQI7|RU2B_MOUSE | U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 | 25 | 120 | 1.0E-27 |
| sp|P08579|RU2B_HUMAN | U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 | 25 | 120 | 2.0E-27 |
| sp|O22922|RU2B1_ARATH | U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 | 25 | 119 | 3.0E-25 |
| sp|Q06AA4|SNRPA_PIG | U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 | 25 | 119 | 9.0E-25 |
| sp|Q2KIR1|SNRPA_BOVIN | U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 | 25 | 119 | 9.0E-25 |
| sp|P09012|SNRPA_HUMAN | U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 | 25 | 119 | 1.0E-24 |
| sp|Q8H1S6|RU2B2_ARATH | U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1 | 25 | 119 | 3.0E-24 |
| sp|B8AM21|RU2B_ORYSI | U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1 | 25 | 118 | 4.0E-24 |
| sp|Q10MR0|RU2B_ORYSJ | U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1 | 25 | 118 | 7.0E-24 |
| sp|P45429|SNRPA_XENLA | U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 | 20 | 119 | 8.0E-24 |
| sp|P43332|SNRPA_DROME | U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 | 23 | 119 | 1.0E-23 |
| sp|Q62189|SNRPA_MOUSE | U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=1 SV=3 | 26 | 119 | 6.0E-23 |
| sp|Q0DKM4|RU1A_ORYSJ | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 | 25 | 119 | 7.0E-22 |
| sp|A2Y0J7|RU1A_ORYSI | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 | 25 | 119 | 7.0E-22 |
| sp|Q39244|RU1A_ARATH | U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 | 25 | 119 | 3.0E-21 |
| sp|O74968|RU1A_SCHPO | U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 | 17 | 114 | 7.0E-18 |
| sp|P40567|MSL1_YEAST | U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 | 28 | 109 | 7.0E-13 |
| sp|Q8JZV4|RBM41_MOUSE | RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1 | 13 | 108 | 5.0E-08 |
| sp|Q6DJI9|ZCRB1_XENLA | Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1 | 9 | 106 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 3721 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2283 MTTIAPARGLAPNASLPAKVQPLVPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGSVLDVVALKTIKMRGQAHV TFKDIQTATQAMRHLNGHMFLGHELKIEYAKSKSDFVAKLDGTFSIASMSIGAVAAEQTELQKSIFDAPIPGPMS AAAKVDQQLGNVNNDTKEASIPEARGQKRPREEEKEDSDEDVAMEEDSDDE* |
| Coding | >OphauB2|2283 ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT GAATGA |
| Transcript | >OphauB2|2283 ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT GAATGA |
| Gene | >OphauB2|2283 ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC AACCAGACGTGAGCTGCTCGGCTTCAGACGCTACCGCTCTTTAGCTTGTTGACATGTTGAACAGCTTATACGTGA CCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATGCTCTTCTCGACTTACGGCT CTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTGACCTTTAAGGATATACAGA CGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTGGTTAGCACTCGCCTCGCAT CAAGTCGCATGTGGCGTTAACACCAACTTACATGTATGCAGAAAATCGAGTACGCAAAGTCCAAATCTGATTTTG TTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCGATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGC AAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCAGCCGCAGCCAAGGTCGATCAGCAATTGGGTAATG TCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGAGGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAG ACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGATGAATGA |