Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2283
Gene name
LocationContig_17:142798..143520
Strand+
Gene length (bp)722
Transcript length (bp)606
Coding sequence length (bp)606
Protein length (aa) 202

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-10 29 101
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.7E-09 14 114

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 2.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-28
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 120 1.0E-27
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 120 2.0E-27
sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 25 119 3.0E-25
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 2.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-28
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 120 1.0E-27
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 120 2.0E-27
sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 25 119 3.0E-25
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 25 119 9.0E-25
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 25 119 9.0E-25
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 25 119 1.0E-24
sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1 25 119 3.0E-24
sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1 25 118 4.0E-24
sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1 25 118 7.0E-24
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 20 119 8.0E-24
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 23 119 1.0E-23
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=1 SV=3 26 119 6.0E-23
sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 25 119 7.0E-22
sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 25 119 7.0E-22
sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 25 119 3.0E-21
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 17 114 7.0E-18
sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 28 109 7.0E-13
sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1 13 108 5.0E-08
sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1 9 106 7.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3721
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1688
Ophiocordyceps australis map64 (Brazil) OphauB2|2283 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|07190
Ophiocordyceps camponoti-rufipedis Ophun1|2341
Ophiocordyceps kimflemingae Ophio5|554
Ophiocordyceps subramaniannii Hirsu2|7260

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2283
MTTIAPARGLAPNASLPAKVQPLVPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGSVLDVVALKTIKMRGQAHV
TFKDIQTATQAMRHLNGHMFLGHELKIEYAKSKSDFVAKLDGTFSIASMSIGAVAAEQTELQKSIFDAPIPGPMS
AAAKVDQQLGNVNNDTKEASIPEARGQKRPREEEKEDSDEDVAMEEDSDDE*
Coding >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG
CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG
ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG
AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG
ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA
GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA
GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT
GAATGA
Transcript >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG
CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG
ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG
AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG
ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA
GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA
GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT
GAATGA
Gene >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACGTGAGCTGCTCGGCTTCAGACGCTACCGCTCTTTAGCTTGTTGACATGTTGAACAGCTTATACGTGA
CCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATGCTCTTCTCGACTTACGGCT
CTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTGACCTTTAAGGATATACAGA
CGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTGGTTAGCACTCGCCTCGCAT
CAAGTCGCATGTGGCGTTAACACCAACTTACATGTATGCAGAAAATCGAGTACGCAAAGTCCAAATCTGATTTTG
TTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCGATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGC
AAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCAGCCGCAGCCAAGGTCGATCAGCAATTGGGTAATG
TCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGAGGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAG
ACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGATGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail