Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2283
Gene name
LocationContig_17:142798..143520
Strand+
Gene length (bp)722
Transcript length (bp)606
Coding sequence length (bp)606
Protein length (aa) 202

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-10 29 101
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.7E-09 14 114

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 2.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-28
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 120 1.0E-27
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 120 2.0E-27
sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 25 119 3.0E-25
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Swissprot ID Swissprot Description Start End E-value
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 2.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-28
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 120 1.0E-27
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 120 2.0E-27
sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 25 119 3.0E-25
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 25 119 9.0E-25
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 25 119 9.0E-25
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 25 119 1.0E-24
sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1 25 119 3.0E-24
sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1 25 118 4.0E-24
sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1 25 118 7.0E-24
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 20 119 8.0E-24
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 23 119 1.0E-23
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=1 SV=3 26 119 6.0E-23
sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 25 119 7.0E-22
sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 25 119 7.0E-22
sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 25 119 3.0E-21
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 17 114 7.0E-18
sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 28 109 7.0E-13
sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1 13 108 5.0E-08
sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1 9 106 7.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2283
MTTIAPARGLAPNASLPAKVQPLVPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGSVLDVVALKTIKMRGQAHV
TFKDIQTATQAMRHLNGHMFLGHELKIEYAKSKSDFVAKLDGTFSIASMSIGAVAAEQTELQKSIFDAPIPGPMS
AAAKVDQQLGNVNNDTKEASIPEARGQKRPREEEKEDSDEDVAMEEDSDDE*
Coding >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG
CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG
ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG
AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG
ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA
GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA
GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT
GAATGA
Transcript >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACCTTATACGTGACCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATG
CTCTTCTCGACTTACGGCTCTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTG
ACCTTTAAGGATATACAGACGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTG
AAAATCGAGTACGCAAAGTCCAAATCTGATTTTGTTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCG
ATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGCAAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCA
GCCGCAGCCAAGGTCGATCAGCAATTGGGTAATGTCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGA
GGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAGACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGAT
GAATGA
Gene >OphauB2|2283
ATGACTACGATTGCGCCTGCACGCGGCTTGGCGCCAAACGCCTCGCTGCCTGCCAAAGTCCAGCCGCTCGTCCCC
AACCAGACGTGAGCTGCTCGGCTTCAGACGCTACCGCTCTTTAGCTTGTTGACATGTTGAACAGCTTATACGTGA
CCAATCTGCCCTCGTCCAAGATCCAGAAGGCCGACCTCCGGACAGCCCTTTACATGCTCTTCTCGACTTACGGCT
CTGTCCTCGACGTTGTGGCGCTCAAGACCATAAAGATGCGCGGGCAGGCACATGTGACCTTTAAGGATATACAGA
CGGCAACGCAGGCGATGCGGCACCTCAATGGTCATATGTTTTTAGGCCATGAATTGGTTAGCACTCGCCTCGCAT
CAAGTCGCATGTGGCGTTAACACCAACTTACATGTATGCAGAAAATCGAGTACGCAAAGTCCAAATCTGATTTTG
TTGCAAAACTCGACGGGACTTTCAGCATTGCTTCCATGTCGATTGGTGCCGTTGCTGCTGAGCAGACAGAGCTGC
AAAAGAGCATCTTTGATGCACCGATCCCAGGTCCCATGTCAGCCGCAGCCAAGGTCGATCAGCAATTGGGTAATG
TCAATAATGACACCAAGGAAGCGAGTATACCAGAGGCCCGAGGACAGAAGCGACCTCGCGAAGAAGAGAAGGAAG
ACAGCGATGAGGACGTCGCCATGGAAGAGGATAGCGATGATGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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