© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|227 |
| Gene name | |
| Location | Contig_10:168692..169547 |
| Strand | + |
| Gene length (bp) | 855 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09439 | SRPRB | Signal recognition particle receptor beta subunit | 1.5E-30 | 47 | 253 |
| PF00025 | Arf | ADP-ribosylation factor family | 7.0E-06 | 47 | 216 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47758|SRPRB_MOUSE | Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 | 49 | 282 | 1.0E-12 |
| sp|Q4FZX7|SRPRB_RAT | Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 | 49 | 282 | 2.0E-12 |
| sp|Q9Y5M8|SRPRB_HUMAN | Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 | 49 | 282 | 1.0E-11 |
| sp|P36057|SRPB_YEAST | Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 | 19 | 284 | 1.0E-11 |
| sp|O13950|SRPB_SCHPO | Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp102 PE=3 SV=1 | 47 | 280 | 6.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47758|SRPRB_MOUSE | Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 | 49 | 282 | 1.0E-12 |
| sp|Q4FZX7|SRPRB_RAT | Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 | 49 | 282 | 2.0E-12 |
| sp|Q9Y5M8|SRPRB_HUMAN | Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 | 49 | 282 | 1.0E-11 |
| sp|P36057|SRPB_YEAST | Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 | 19 | 284 | 1.0E-11 |
| sp|O13950|SRPB_SCHPO | Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp102 PE=3 SV=1 | 47 | 280 | 6.0E-10 |
| sp|Q54XX1|SRPRB_DICDI | Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1 | 48 | 265 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0005488 | binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0043168 | anion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|227 MASLTEIFEALMTPSLPVILLGILLVLGGPVLLHLVLSSSATYTTPPTVLLLGSSGTGKTALLTLLERGDHPSQT HTSQKVQSVELNASTDSASKHSFRNHDDSSGTHTKFLLVDTPGHGKLRPVALGKLARAEKLCAVVFMVDAAALSE RDALASTASYLYDVLLHLQKRASAKSGKSAIPLLVAANKMDLFTALPATVVKAQLEAELTRIRASKSKGLLDSGV GNEDIGSEEHDDWLGEYGSKNFAFDQMREFNLDIDLVGGSVLAEGADVDKWWWWIAQRV* |
| Coding | >OphauB2|227 ATGGCCTCCTTGACCGAAATTTTCGAGGCGCTCATGACACCCTCGCTTCCCGTCATTCTGCTTGGCATTCTCCTT GTCCTCGGCGGCCCCGTGCTCCTCCACCTGGTGCTGTCGTCGTCAGCCACCTACACCACGCCCCCGACGGTGCTG CTCCTCGGCTCCAGCGGCACCGGCAAGACGGCGCTGCTCACCCTGCTTGAGCGTGGCGATCACCCCAGCCAGACG CACACGTCGCAAAAGGTCCAGTCGGTCGAGCTCAATGCCTCGACTGACTCGGCCTCGAAGCACTCGTTTCGCAAC CACGACGATAGCTCGGGCACGCATACAAAGTTTCTCCTGGTCGATACGCCTGGCCATGGAAAGCTGCGTCCCGTG GCACTGGGCAAGCTTGCCAGGGCCGAAAAGCTGTGTGCTGTTGTCTTCATGGTGGATGCTGCCGCCCTTTCGGAG CGCGATGCCCTTGCCTCGACTGCTTCCTATCTCTACGACGTGCTCCTCCACTTGCAAAAAAGGGCCAGCGCCAAG AGCGGCAAAAGCGCAATTCCTCTTCTTGTCGCCGCAAACAAGATGGATCTCTTTACCGCACTCCCGGCCACCGTT GTCAAGGCACAGCTCGAGGCCGAGCTGACCCGTATCCGCGCCTCCAAGAGTAAAGGCTTGCTCGACTCGGGCGTC GGCAACGAAGACATTGGCTCAGAAGAACACGACGACTGGCTGGGCGAGTACGGCTCAAAAAACTTTGCCTTTGAT CAGATGCGCGAGTTTAACCTCGACATTGATCTTGTTGGCGGCAGTGTCTTGGCCGAGGGAGCCGACGTTGACAAG TGGTGGTGGTGGATTGCACAACGCGTGTAG |
| Transcript | >OphauB2|227 ATGGCCTCCTTGACCGAAATTTTCGAGGCGCTCATGACACCCTCGCTTCCCGTCATTCTGCTTGGCATTCTCCTT GTCCTCGGCGGCCCCGTGCTCCTCCACCTGGTGCTGTCGTCGTCAGCCACCTACACCACGCCCCCGACGGTGCTG CTCCTCGGCTCCAGCGGCACCGGCAAGACGGCGCTGCTCACCCTGCTTGAGCGTGGCGATCACCCCAGCCAGACG CACACGTCGCAAAAGGTCCAGTCGGTCGAGCTCAATGCCTCGACTGACTCGGCCTCGAAGCACTCGTTTCGCAAC CACGACGATAGCTCGGGCACGCATACAAAGTTTCTCCTGGTCGATACGCCTGGCCATGGAAAGCTGCGTCCCGTG GCACTGGGCAAGCTTGCCAGGGCCGAAAAGCTGTGTGCTGTTGTCTTCATGGTGGATGCTGCCGCCCTTTCGGAG CGCGATGCCCTTGCCTCGACTGCTTCCTATCTCTACGACGTGCTCCTCCACTTGCAAAAAAGGGCCAGCGCCAAG AGCGGCAAAAGCGCAATTCCTCTTCTTGTCGCCGCAAACAAGATGGATCTCTTTACCGCACTCCCGGCCACCGTT GTCAAGGCACAGCTCGAGGCCGAGCTGACCCGTATCCGCGCCTCCAAGAGTAAAGGCTTGCTCGACTCGGGCGTC GGCAACGAAGACATTGGCTCAGAAGAACACGACGACTGGCTGGGCGAGTACGGCTCAAAAAACTTTGCCTTTGAT CAGATGCGCGAGTTTAACCTCGACATTGATCTTGTTGGCGGCAGTGTCTTGGCCGAGGGAGCCGACGTTGACAAG TGGTGGTGGTGGATTGCACAACGCGTGTAG |
| Gene | >OphauB2|227 ATGGCCTCCTTGACCGAAATTTTCGAGGCGCTCATGACACCCTCGCTTCCCGTCATTCTGCTTGGCATTCTCCTT GTCCTCGGCGGCCCCGTGCTCCTCCACCTGGTGCTGTCGTCGTCAGCCACCTACACCACGCCCCCGACGGTGCTG CTCCTCGGCTCCAGCGGCACCGGCAAGACGGCGCTGCTCACCCTGCTTGAGCGTGGCGATCACCCCAGCCAGACG CACACGTCGCAAAAGGTCCAGTCGGTCGAGCTCAATGCCTCGACTGACTCGGCCTCGAAGCACTCGTTTCGCAAC CACGACGATAGCTCGGGCACGCATACAAAGTTTCTCCTGGTCGATACGCCTGGCCATGGAAAGCTGCGTCCCGTG GCACTGGGCAAGCTTGCCAGGGCCGAAAAGCTGTGTGCTGTTGTCTTCATGGTGGATGCTGCCGCCCTTTCGGAG CGCGATGCCCTTGCCTCGACTGCTTCCTATCTCTACGACGTGCTCCTCCACTTGCAAAAAAGGGCCAGCGCCAAG AGCGGCAAAAGCGCAATTCCTCTTCTTGTCGCCGCAAACAAGATGGATCTCTTTACCGCACTCCCGGCCACCGTT GTCAAGGCACAGCTCGAGGCCGAGCTGACCCGTATCCGCGCCTCCAAGAGTAAAGGCTTGCTCGACTCGGGCGTC GGCAACGAAGACATTGGCTCAGAAGAACACGACGACTGGCTGGGCGAGTACGGCTCAAAAAACTTTGCCTTTGAT CAGATGCGCGAGTTTAACCTCGACATTGATCTTGTTGGCGGCAGTGTCTTGGCCGAGGGAGCCGACGTTGACAAG TGGTGGTGGTGGATTGCACAACGCGTGTAG |