Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|2257
Gene name
LocationContig_17:67386..68471
Strand+
Gene length (bp)1085
Transcript length (bp)981
Coding sequence length (bp)981
Protein length (aa) 327

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q12063|UPPS_YEAST Dehydrodolichyl diphosphate syntase complex subunit NUS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1 SV=1 66 326 7.0E-48
sp|Q9Y7K8|UPPS_SCHPO Dehydrodolichyl diphosphate syntase complex subunit nus1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nus1 PE=1 SV=1 69 325 2.0E-47
sp|Q96E22|NGBR_HUMAN Dehydrodolichyl diphosphate syntase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1 110 326 1.0E-21
sp|Q99LJ8|NGBR_MOUSE Dehydrodolichyl diphosphate syntase complex subunit Nus1 OS=Mus musculus GN=Nus1 PE=2 SV=1 110 326 5.0E-21
sp|Q6DHR8|NGBR_DANRE Dehydrodolichyl diphosphate syntase complex subunit nus1 OS=Danio rerio GN=nus1 PE=2 SV=1 58 326 4.0E-13
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q12063|UPPS_YEAST Dehydrodolichyl diphosphate syntase complex subunit NUS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1 SV=1 66 326 7.0E-48
sp|Q9Y7K8|UPPS_SCHPO Dehydrodolichyl diphosphate syntase complex subunit nus1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nus1 PE=1 SV=1 69 325 2.0E-47
sp|Q96E22|NGBR_HUMAN Dehydrodolichyl diphosphate syntase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1 110 326 1.0E-21
sp|Q99LJ8|NGBR_MOUSE Dehydrodolichyl diphosphate syntase complex subunit Nus1 OS=Mus musculus GN=Nus1 PE=2 SV=1 110 326 5.0E-21
sp|Q6DHR8|NGBR_DANRE Dehydrodolichyl diphosphate syntase complex subunit nus1 OS=Danio rerio GN=nus1 PE=2 SV=1 58 326 4.0E-13
sp|O26334|UPPS_METTH Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=uppS PE=3 SV=1 228 325 4.0E-08
sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1 219 326 6.0E-08
sp|Q8A1E0|ISPT_BACTN Isoprenyl transferase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=uppS PE=3 SV=1 230 326 7.0E-08
sp|Q58767|UPPS_METJA Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=uppS PE=3 SV=1 229 326 9.0E-08
sp|Q7NPE7|ISPT_GLOVI Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421) GN=uppS PE=3 SV=1 117 326 2.0E-06
sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=uppS PE=3 SV=1 160 326 2.0E-06
sp|Q8PMK9|UPPS_XANAC Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) OS=Xanthomonas axonopodis pv. citri (strain 306) GN=uppS PE=3 SV=1 198 325 4.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 62 84 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|2257
MSLAARARAAYRADERHGHKLLSEQEKKRMINRYLPPTSEVPALSKSPSVQRRPSLGVRRFLHTQLHVLVFILLH
GLFSLYIRIRQTVNVVCYRISSVMYYHHATPEYIRRDVMGLSRRPKHLSAILRAENIQRSKTDLERLIDETAELA
TWCACAEIPMLSIYEKTGILKKHIPRVYDAVAQKFTFYYAGQHPSLSITSPHKDEYSGPTDDGLHQGHLKLHLIS
EQDGRESIVDLTRTLAEMSQKGKLCPQDISIELVDAELSEGIMPEPELLILFSPYVELSSYPPWQIRLTEIFCLR
DNESFGYQVFLRALRSYAKAQMRRGR*
Coding >OphauB2|2257
ATGTCTCTGGCCGCTCGCGCTCGCGCTGCCTACCGCGCCGATGAGCGTCATGGGCACAAACTGCTGAGCGAGCAG
GAGAAGAAGCGAATGATTAATAGATATCTTCCTCCCACAAGCGAAGTGCCGGCTCTGAGCAAGTCTCCATCAGTG
CAGCGCAGACCAAGTCTAGGTGTTCGGCGTTTTCTTCACACCCAGCTTCACGTCTTGGTCTTCATCCTTCTCCAC
GGCCTCTTTTCGCTCTACATTCGCATCCGACAAACTGTCAATGTTGTCTGCTACCGAATATCCTCCGTCATGTAC
TACCACCATGCCACGCCAGAGTACATTCGCCGAGACGTCATGGGCCTGAGTAGACGGCCCAAGCACCTGAGTGCC
ATTCTCAGAGCCGAGAATATCCAGAGATCCAAGACGGACCTGGAGCGCCTCATTGACGAGACGGCAGAGCTTGCC
ACTTGGTGTGCCTGTGCTGAGATTCCAATGCTCTCCATTTACGAAAAAACTGGCATCCTCAAGAAACACATACCG
CGTGTCTATGATGCTGTGGCCCAGAAATTCACCTTCTACTATGCTGGCCAGCATCCGAGCCTGTCAATCACATCG
CCTCACAAGGATGAGTACTCGGGGCCAACGGATGACGGCCTTCATCAGGGACACCTCAAGTTGCATCTCATTTCC
GAGCAGGATGGGAGAGAGTCAATCGTGGATCTGACTCGCACCTTGGCGGAGATGTCCCAAAAGGGAAAATTATGT
CCGCAGGACATTTCGATTGAGCTCGTCGACGCCGAACTGTCCGAGGGCATCATGCCAGAGCCCGAGCTGCTCATT
TTGTTCAGCCCCTATGTCGAGCTCTCAAGCTACCCACCTTGGCAGATTCGCTTGACCGAGATTTTTTGTCTACGC
GACAACGAGAGCTTTGGCTACCAAGTTTTCCTACGAGCGCTGCGCAGCTACGCCAAAGCACAGATGCGCCGGGGA
AGGTGA
Transcript >OphauB2|2257
ATGTCTCTGGCCGCTCGCGCTCGCGCTGCCTACCGCGCCGATGAGCGTCATGGGCACAAACTGCTGAGCGAGCAG
GAGAAGAAGCGAATGATTAATAGATATCTTCCTCCCACAAGCGAAGTGCCGGCTCTGAGCAAGTCTCCATCAGTG
CAGCGCAGACCAAGTCTAGGTGTTCGGCGTTTTCTTCACACCCAGCTTCACGTCTTGGTCTTCATCCTTCTCCAC
GGCCTCTTTTCGCTCTACATTCGCATCCGACAAACTGTCAATGTTGTCTGCTACCGAATATCCTCCGTCATGTAC
TACCACCATGCCACGCCAGAGTACATTCGCCGAGACGTCATGGGCCTGAGTAGACGGCCCAAGCACCTGAGTGCC
ATTCTCAGAGCCGAGAATATCCAGAGATCCAAGACGGACCTGGAGCGCCTCATTGACGAGACGGCAGAGCTTGCC
ACTTGGTGTGCCTGTGCTGAGATTCCAATGCTCTCCATTTACGAAAAAACTGGCATCCTCAAGAAACACATACCG
CGTGTCTATGATGCTGTGGCCCAGAAATTCACCTTCTACTATGCTGGCCAGCATCCGAGCCTGTCAATCACATCG
CCTCACAAGGATGAGTACTCGGGGCCAACGGATGACGGCCTTCATCAGGGACACCTCAAGTTGCATCTCATTTCC
GAGCAGGATGGGAGAGAGTCAATCGTGGATCTGACTCGCACCTTGGCGGAGATGTCCCAAAAGGGAAAATTATGT
CCGCAGGACATTTCGATTGAGCTCGTCGACGCCGAACTGTCCGAGGGCATCATGCCAGAGCCCGAGCTGCTCATT
TTGTTCAGCCCCTATGTCGAGCTCTCAAGCTACCCACCTTGGCAGATTCGCTTGACCGAGATTTTTTGTCTACGC
GACAACGAGAGCTTTGGCTACCAAGTTTTCCTACGAGCGCTGCGCAGCTACGCCAAAGCACAGATGCGCCGGGGA
AGGTGA
Gene >OphauB2|2257
ATGTCTCTGGCCGCTCGCGCTCGCGCTGCCTACCGCGCCGATGAGCGTCATGGGCACAAACTGCTGAGCGAGCAG
GAGAAGAAGCGAATGATTAATGTAAGACAGTTGGATGGCTCGACAAGCTCATATATTGACTACTAGCAGAGATAT
CTTCCTCCCACAAGCGAAGTGCCGGCTCTGAGCAAGTCTCCATCAGTGCAGCGCAGACCAAGTCTAGGTGTTCGG
CGTTTTCTTCACACCCAGCTTCACGTCTTGGTCTTCATCCTTCTCCACGGCCTCTTTTCGCTCTACATTCGCATC
CGACAAACTGTCAATGTTGTCTGCTACCGAATATCCTCCGTCATGTACTACCACCATGCCACGCCAGAGTACATT
CGCCGAGACGTCATGGGCCTGAGTAGACGGCCCAAGCACCTGAGTGCCATTCTCAGAGCCGAGAATATCCAGAGA
TCCAAGACGGACCTGGAGCGCCTCATTGACGAGACGGCAGAGCTTGCCACTTGGTGTGCCTGTGCTGAGATTCCA
ATGCTCTCCATTTACGAAAAAACTGGTTGGTGCCTTAGCAGAGAAGCCGTGCCATGCTGCATTTTCTAACAAGCC
TACCAGGCATCCTCAAGAAACACATACCGCGTGTCTATGATGCTGTGGCCCAGAAATTCACCTTCTACTATGCTG
GCCAGCATCCGAGCCTGTCAATCACATCGCCTCACAAGGATGAGTACTCGGGGCCAACGGATGACGGCCTTCATC
AGGGACACCTCAAGTTGCATCTCATTTCCGAGCAGGATGGGAGAGAGTCAATCGTGGATCTGACTCGCACCTTGG
CGGAGATGTCCCAAAAGGGAAAATTATGTCCGCAGGACATTTCGATTGAGCTCGTCGACGCCGAACTGTCCGAGG
GCATCATGCCAGAGCCCGAGCTGCTCATTTTGTTCAGCCCCTATGTCGAGCTCTCAAGCTACCCACCTTGGCAGA
TTCGCTTGACCGAGATTTTTTGTCTACGCGACAACGAGAGCTTTGGCTACCAAGTTTTCCTACGAGCGCTGCGCA
GCTACGCCAAAGCACAGATGCGCCGGGGAAGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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