© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2128 |
| Gene name | |
| Location | Contig_164:12051..12844 |
| Strand | - |
| Gene length (bp) | 793 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04750 | Far-17a_AIG1 | FAR-17a/AIG1-like protein | 4.9E-46 | 19 | 215 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q96WV4|YHU5_SCHPO | UPF0641 membrane protein PJ4664.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.05 PE=3 SV=2 | 21 | 203 | 1.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 50 | 72 | 22 |
| 3 | 85 | 104 | 19 |
| 4 | 148 | 170 | 22 |
| 5 | 194 | 216 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2128 MTQRRVQRLVSPGTSCLSLPLHVLGIASFAYNFHFLTLWDTPFQTAYGGHYQFLTIIGLAASLAAFVFAALADVT QSVALFQIKNAIAVIATPLEVVITILYWSLKAIDPQLLMPDESFALPRLADLGFHLAPAALLTLDLVLFSPPWTI PAYAIMALSTTFAFAYWYWVELCFSKNGWYPYPMFGLLSTSQRVLLFAFSALLVTLTSGGLKWLYARINGFEEAR KEPHKPLKKL* |
| Coding | >OphauB2|2128 ATGACGCAGCGTCGTGTGCAACGTCTGGTTTCACCAGGCACAAGCTGCCTCTCCCTGCCTCTGCACGTGCTGGGC ATCGCCTCCTTTGCCTACAACTTCCACTTCTTGACGCTCTGGGACACTCCCTTCCAAACTGCCTATGGAGGACAC TACCAGTTTCTCACAATTATCGGCCTCGCAGCTTCGCTTGCAGCCTTTGTCTTTGCCGCTTTGGCTGATGTGACA CAAAGCGTTGCTCTCTTTCAAATCAAAAACGCCATTGCCGTTATTGCAACGCCTCTCGAGGTTGTCATTACGATC CTCTACTGGAGCCTCAAGGCCATTGATCCACAATTGCTCATGCCAGATGAATCTTTTGCGTTGCCCCGACTCGCC GACCTCGGCTTTCATCTTGCCCCGGCCGCCCTGCTTACCCTGGATCTTGTCTTGTTCAGTCCGCCATGGACAATT CCAGCCTATGCCATCATGGCGCTCAGCACAACCTTTGCTTTTGCTTATTGGTACTGGGTTGAGCTATGTTTTAGC AAGAATGGATGGTATCCCTATCCCATGTTTGGTCTCTTGAGCACGTCGCAGCGTGTCCTGCTTTTTGCATTTTCT GCCCTTCTTGTTACCCTGACATCTGGCGGTCTCAAATGGCTATATGCTCGCATCAATGGTTTTGAAGAGGCTCGC AAGGAGCCGCACAAGCCTCTTAAGAAGTTGTAA |
| Transcript | >OphauB2|2128 ATGACGCAGCGTCGTGTGCAACGTCTGGTTTCACCAGGCACAAGCTGCCTCTCCCTGCCTCTGCACGTGCTGGGC ATCGCCTCCTTTGCCTACAACTTCCACTTCTTGACGCTCTGGGACACTCCCTTCCAAACTGCCTATGGAGGACAC TACCAGTTTCTCACAATTATCGGCCTCGCAGCTTCGCTTGCAGCCTTTGTCTTTGCCGCTTTGGCTGATGTGACA CAAAGCGTTGCTCTCTTTCAAATCAAAAACGCCATTGCCGTTATTGCAACGCCTCTCGAGGTTGTCATTACGATC CTCTACTGGAGCCTCAAGGCCATTGATCCACAATTGCTCATGCCAGATGAATCTTTTGCGTTGCCCCGACTCGCC GACCTCGGCTTTCATCTTGCCCCGGCCGCCCTGCTTACCCTGGATCTTGTCTTGTTCAGTCCGCCATGGACAATT CCAGCCTATGCCATCATGGCGCTCAGCACAACCTTTGCTTTTGCTTATTGGTACTGGGTTGAGCTATGTTTTAGC AAGAATGGATGGTATCCCTATCCCATGTTTGGTCTCTTGAGCACGTCGCAGCGTGTCCTGCTTTTTGCATTTTCT GCCCTTCTTGTTACCCTGACATCTGGCGGTCTCAAATGGCTATATGCTCGCATCAATGGTTTTGAAGAGGCTCGC AAGGAGCCGCACAAGCCTCTTAAGAAGTTGTAA |
| Gene | >OphauB2|2128 ATGACGCAGCGTCGTGTGCAACGTCTGGTTTCACCAGGCACAAGCTGCCTCTCCCTGCCTCTGCACGTGCTGGGC ATCGCCTCCTTTGCCTACAACTTCCACTTCTTGACGCTCTGGGACACTCCCTTCCAAACTGCCTATGGAGGACAC TACCAGTTTCTCACAATTATCGGCCTCGCAGCTTCGCTTGCAGCCTTTGTCTTTGCCGCTTTGGCTGATGTGACA CAAAGCGTTGCTCTCTTTCAAATCAAAAACGCCATTGCCGTTATTGCAACGCCTCTCGAGGTTGTCATTACGATC CTCTACTGGAGCCTCAAGGCCATTGATCCACAATTGCTCATGCCAGATGAATCTTTTGCGTTGCCCCGACTCGCC GACCTCGGCTTTCATCTTGCCCCGGCCGCCCTGCTTACCCTGGATCTTGTCTTGTTCAGTCCGCCATGGACAATT CCAGCCTATGCCATCATGGCGCTCAGCACAACCTTTGCTTTTGCTTATTGGTACTGGGTTGAGCTATGTTTTAGC AAGAATGGATGGTGAGTTGCCAGTACTACTCCTTTTTTGGCGTCTGCAAAGGCCTGCGCTCACCAAGTCTCTTTT TTTTTTTTTTTAACTTTCTAGGTATCCCTATCCCATGTTTGGTCTCTTGAGCACGTCGCAGCGTGTCCTGCTTTT TGCATTTTCTGCCCTTCTTGTTACCCTGACATCTGGCGGTCTCAAATGGCTATATGCTCGCATCAATGGTTTTGA AGAGGCTCGCAAGGAGCCGCACAAGCCTCTTAAGAAGTTGTAA |