© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|2115 |
| Gene name | |
| Location | Contig_163:32875..34159 |
| Strand | + |
| Gene length (bp) | 1284 |
| Transcript length (bp) | 1215 |
| Coding sequence length (bp) | 1215 |
| Protein length (aa) | 405 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03908 | Sec20 | Sec20 | 2.3E-14 | 171 | 258 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005484 | SNAP receptor activity | Yes |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Yes |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0030674 | protein-macromolecule adaptor activity | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0060090 | molecular adaptor activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 236 | 255 | 19 |
| 2 | 264 | 286 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|2115 MSTLRLQERAAAIEEIIAELRNLCQRLCSLAQHEDSTEDELIADHAQKMRKLHEEIDLLAADLDLNHLSGHDGAR ARENVERFWADMARCRSEFRKARLVAKKKAEDAQRAQRELRIKSFSVSAPVPADETPTATSPTARAPLHRNLRTF HTLDQTSLSEKDRQAVGASGNVTDALRRTHDLMATELARSDFARQTLEESSAALEHLGESYSSLDTMLASSRDLL GTLLRSEKSDTWYLQTAFYVLLVTGAWLVYRRLLYGPIWWLVWLPLRIVFGMGAKIGGVVVQRGGGGGEKVQMGI GREATATVAGLPDEELPTVEVKSETWAIEDEIPTFEAVDELPIMEDVDELPIIEDVDELPSIEDVDELPIIEKMD ELPVIEEMDEPPVIEARDELPIIAGRDEL* |
| Coding | >OphauB2|2115 ATGTCTACTCTTCGCTTACAAGAGCGCGCAGCGGCTATTGAAGAAATTATAGCCGAGTTACGAAACCTGTGTCAA CGCCTTTGCAGTCTCGCGCAGCATGAGGACAGCACCGAGGACGAGCTCATTGCAGACCATGCACAAAAGATGCGG AAACTACACGAAGAAATAGACCTGTTGGCTGCGGACTTGGACTTGAATCACCTGTCTGGCCACGATGGGGCGAGG GCGAGGGAAAACGTGGAGAGATTTTGGGCTGATATGGCGAGATGCCGGAGCGAGTTTCGCAAAGCGCGACTTGTT GCCAAGAAGAAGGCTGAAGATGCGCAGAGGGCGCAACGAGAGCTTCGAATCAAGTCGTTTTCGGTATCTGCGCCC GTGCCGGCCGACGAGACACCGACGGCAACATCACCGACAGCAAGGGCACCTCTTCACCGAAACTTACGCACATTC CACACCCTTGACCAGACTAGTCTTTCAGAAAAGGACAGACAAGCCGTGGGTGCGAGCGGCAACGTGACGGATGCG CTGCGTCGAACGCACGACCTCATGGCCACGGAGCTGGCACGCAGCGACTTTGCGCGCCAGACGCTCGAGGAGTCG AGCGCAGCGCTCGAGCACCTTGGCGAGTCGTACTCGTCGCTGGACACGATGCTGGCGAGCTCGCGCGACTTGCTG GGCACGCTGCTGCGGTCGGAAAAGAGCGACACGTGGTATCTGCAAACAGCCTTTTACGTGCTACTGGTTACGGGC GCGTGGCTTGTATACCGACGGCTGCTCTACGGGCCCATTTGGTGGCTGGTGTGGCTGCCGTTGCGTATTGTGTTT GGCATGGGGGCCAAGATTGGGGGGGTTGTTGTACAGAGGGGGGGGGGAGGGGGGGAAAAGGTACAGATGGGAATA GGGCGGGAGGCGACGGCGACGGTTGCAGGGTTGCCGGATGAGGAGCTGCCGACTGTTGAGGTGAAGAGCGAGACT TGGGCTATTGAGGACGAAATCCCGACTTTTGAGGCGGTGGACGAGTTGCCGATTATGGAGGATGTGGACGAGCTG CCGATTATTGAGGATGTGGACGAGCTGCCGAGTATTGAGGATGTGGACGAGCTGCCGATTATTGAGAAAATGGAC GAGCTCCCAGTTATCGAGGAAATGGACGAGCCCCCGGTTATAGAGGCAAGGGACGAGCTCCCGATTATTGCGGGA AGGGACGAGCTATAA |
| Transcript | >OphauB2|2115 ATGTCTACTCTTCGCTTACAAGAGCGCGCAGCGGCTATTGAAGAAATTATAGCCGAGTTACGAAACCTGTGTCAA CGCCTTTGCAGTCTCGCGCAGCATGAGGACAGCACCGAGGACGAGCTCATTGCAGACCATGCACAAAAGATGCGG AAACTACACGAAGAAATAGACCTGTTGGCTGCGGACTTGGACTTGAATCACCTGTCTGGCCACGATGGGGCGAGG GCGAGGGAAAACGTGGAGAGATTTTGGGCTGATATGGCGAGATGCCGGAGCGAGTTTCGCAAAGCGCGACTTGTT GCCAAGAAGAAGGCTGAAGATGCGCAGAGGGCGCAACGAGAGCTTCGAATCAAGTCGTTTTCGGTATCTGCGCCC GTGCCGGCCGACGAGACACCGACGGCAACATCACCGACAGCAAGGGCACCTCTTCACCGAAACTTACGCACATTC CACACCCTTGACCAGACTAGTCTTTCAGAAAAGGACAGACAAGCCGTGGGTGCGAGCGGCAACGTGACGGATGCG CTGCGTCGAACGCACGACCTCATGGCCACGGAGCTGGCACGCAGCGACTTTGCGCGCCAGACGCTCGAGGAGTCG AGCGCAGCGCTCGAGCACCTTGGCGAGTCGTACTCGTCGCTGGACACGATGCTGGCGAGCTCGCGCGACTTGCTG GGCACGCTGCTGCGGTCGGAAAAGAGCGACACGTGGTATCTGCAAACAGCCTTTTACGTGCTACTGGTTACGGGC GCGTGGCTTGTATACCGACGGCTGCTCTACGGGCCCATTTGGTGGCTGGTGTGGCTGCCGTTGCGTATTGTGTTT GGCATGGGGGCCAAGATTGGGGGGGTTGTTGTACAGAGGGGGGGGGGAGGGGGGGAAAAGGTACAGATGGGAATA GGGCGGGAGGCGACGGCGACGGTTGCAGGGTTGCCGGATGAGGAGCTGCCGACTGTTGAGGTGAAGAGCGAGACT TGGGCTATTGAGGACGAAATCCCGACTTTTGAGGCGGTGGACGAGTTGCCGATTATGGAGGATGTGGACGAGCTG CCGATTATTGAGGATGTGGACGAGCTGCCGAGTATTGAGGATGTGGACGAGCTGCCGATTATTGAGAAAATGGAC GAGCTCCCAGTTATCGAGGAAATGGACGAGCCCCCGGTTATAGAGGCAAGGGACGAGCTCCCGATTATTGCGGGA AGGGACGAGCTATAA |
| Gene | >OphauB2|2115 ATGTCTACTCTTCGCTTACAAGAGCGCGCAGCGGCTATTGAAGAAATTATAGCCGAGTTACGAAACCTGTGTCAA CGCCTTTGCAGTCTCGCGCAGCATGAGGACAGCACCGAGGACGAGCTCATTGCAGACCATGCACAAAAGATGCGG AAACTACACGAAGAAATAGACCTGTTGGCTGCGGACTTGGACTTGAATCACCTGTCTGGCCACGATGGGGCGAGG GCGAGGGAAAACGTGGAGAGATTTTGGGCTGATATGGCGAGGCAAGACACAAAAAAAATGATGGATGCGTGATTA TGGAGAAGAAAAGGTGCTAATACTTGCTGTTGCAGATGCCGGAGCGAGTTTCGCAAAGCGCGACTTGTTGCCAAG AAGAAGGCTGAAGATGCGCAGAGGGCGCAACGAGAGCTTCGAATCAAGTCGTTTTCGGTATCTGCGCCCGTGCCG GCCGACGAGACACCGACGGCAACATCACCGACAGCAAGGGCACCTCTTCACCGAAACTTACGCACATTCCACACC CTTGACCAGACTAGTCTTTCAGAAAAGGACAGACAAGCCGTGGGTGCGAGCGGCAACGTGACGGATGCGCTGCGT CGAACGCACGACCTCATGGCCACGGAGCTGGCACGCAGCGACTTTGCGCGCCAGACGCTCGAGGAGTCGAGCGCA GCGCTCGAGCACCTTGGCGAGTCGTACTCGTCGCTGGACACGATGCTGGCGAGCTCGCGCGACTTGCTGGGCACG CTGCTGCGGTCGGAAAAGAGCGACACGTGGTATCTGCAAACAGCCTTTTACGTGCTACTGGTTACGGGCGCGTGG CTTGTATACCGACGGCTGCTCTACGGGCCCATTTGGTGGCTGGTGTGGCTGCCGTTGCGTATTGTGTTTGGCATG GGGGCCAAGATTGGGGGGGTTGTTGTACAGAGGGGGGGGGGAGGGGGGGAAAAGGTACAGATGGGAATAGGGCGG GAGGCGACGGCGACGGTTGCAGGGTTGCCGGATGAGGAGCTGCCGACTGTTGAGGTGAAGAGCGAGACTTGGGCT ATTGAGGACGAAATCCCGACTTTTGAGGCGGTGGACGAGTTGCCGATTATGGAGGATGTGGACGAGCTGCCGATT ATTGAGGATGTGGACGAGCTGCCGAGTATTGAGGATGTGGACGAGCTGCCGATTATTGAGAAAATGGACGAGCTC CCAGTTATCGAGGAAATGGACGAGCCCCCGGTTATAGAGGCAAGGGACGAGCTCCCGATTATTGCGGGAAGGGAC GAGCTATAA |