Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1925
Gene name
LocationContig_157:7912..8367
Strand-
Gene length (bp)455
Transcript length (bp)228
Coding sequence length (bp)228
Protein length (aa) 76

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01781 Ribosomal_L38e Ribosomal L38e protein family 1.5E-32 2 69

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-38 PE=3 SV=1 1 75 1.0E-34
sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3801 PE=3 SV=1 1 74 1.0E-28
sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3802 PE=3 SV=1 1 74 7.0E-26
sp|Q56FC8|RL38_LYSTE 60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1 1 75 7.0E-23
sp|Q962S5|RL38_SPOFR 60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1 1 71 4.0E-22
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-38 PE=3 SV=1 1 75 1.0E-34
sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3801 PE=3 SV=1 1 74 1.0E-28
sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3802 PE=3 SV=1 1 74 7.0E-26
sp|Q56FC8|RL38_LYSTE 60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1 1 75 7.0E-23
sp|Q962S5|RL38_SPOFR 60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1 1 71 4.0E-22
sp|Q6F450|RL38_PLUXY 60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1 1 71 1.0E-21
sp|Q5UAP8|RL38_BOMMO 60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1 1 71 2.0E-21
sp|Q4GX86|RL38_TIMBA 60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1 1 71 2.0E-21
sp|Q5MGL3|RL38_LONON 60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1 1 71 2.0E-21
sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3 1 71 5.0E-21
sp|Q4GX87|RL38_JULON 60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1 1 71 7.0E-21
sp|A2I469|RL38_MACHI 60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38 PE=3 SV=1 1 71 8.0E-21
sp|O61570|RL38_OSTOS 60S ribosomal protein L38 OS=Ostertagia ostertagi GN=rpl-38 PE=3 SV=1 1 71 9.0E-21
sp|Q8HXB9|RL38_MACFA 60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3 1 68 2.0E-20
sp|Q32PB9|RL38_BOVIN 60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4 1 68 2.0E-20
sp|P63174|RL38_RAT 60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2 1 68 2.0E-20
sp|Q4PMD1|RL38_IXOSC 60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1 1 68 2.0E-20
sp|P63173|RL38_HUMAN 60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2 1 68 2.0E-20
sp|Q7Q0U1|RL38_ANOGA 60S ribosomal protein L38 OS=Anopheles gambiae GN=RpL38 PE=3 SV=2 1 71 3.0E-20
sp|O17570|RL38_CAEEL 60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=3 SV=2 1 68 3.0E-20
sp|Q1HRT4|RL38_AEDAE 60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1 1 71 4.0E-20
sp|P46291|RL38_SOLLC 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1 1 71 7.0E-20
sp|Q95V84|RL38_BRABE 60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1 1 68 8.0E-20
sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1 1 71 9.0E-19
sp|Q6XIM7|RL38_DROYA 60S ribosomal protein L38 OS=Drosophila yakuba GN=RpL38 PE=3 SV=1 1 71 3.0E-18
sp|Q9W5N2|RL38_DROME 60S ribosomal protein L38 OS=Drosophila melanogaster GN=RpL38 PE=1 SV=1 1 71 3.0E-18
sp|A7L6A2|RL38_ARTSF 60S ribosomal protein L38 OS=Artemia franciscana GN=RPL38 PE=3 SV=1 1 68 1.0E-17
sp|P49167|RL38_YEAST 60S ribosomal protein L38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL38 PE=1 SV=1 1 68 7.0E-16
sp|A6N9N3|RL38_ORNPR 60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1 1 68 2.0E-15
sp|Q09JT4|RL38_ARGMO 60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3 SV=1 1 68 2.0E-15
sp|Q55GJ7|RL38_DICDI 60S ribosomal protein L38 OS=Dictyostelium discoideum GN=rpl38 PE=3 SV=1 1 71 4.0E-15
sp|Q4UGN5|RL38_THEAN 60S ribosomal protein L38 OS=Theileria annulata GN=RPL38 PE=3 SV=1 1 66 3.0E-09
sp|Q4N921|RL38_THEPA 60S ribosomal protein L38 OS=Theileria parva GN=RPL38 PE=3 SV=1 1 66 5.0E-08
sp|Q22SV3|RL38_TETTS 60S ribosomal protein L38 OS=Tetrahymena thermophila (strain SB210) GN=RPL38 PE=1 SV=2 1 75 2.0E-07
[Show less]

GO

GO Term Description Terminal node
GO:0003735 structural constituent of ribosome Yes
GO:0005840 ribosome Yes
GO:0006412 translation Yes
GO:0043228 non-membrane-bounded organelle No
GO:0110165 cellular anatomical entity No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0043226 organelle No
GO:1901576 organic substance biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043603 cellular amide metabolic process No
GO:0003674 molecular_function No
GO:0009059 macromolecule biosynthetic process No
GO:0005198 structural molecule activity No
GO:0008150 biological_process No
GO:0005575 cellular_component No
GO:0043170 macromolecule metabolic process No
GO:0006518 peptide metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0043604 amide biosynthetic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:1901566 organonitrogen compound biosynthetic process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0009058 biosynthetic process No
GO:0043043 peptide biosynthetic process No
GO:0019538 protein metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0043229 intracellular organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1925
MPREVADIKKFIEICRRKDASSARIKKNNKEKVVKFKVRCRKYLYTLVLRDADKAEKLKQSLPPNLRILDVSKKN
*
Coding >OphauB2|1925
ATGCCTCGGGAAGTTGCTGATATCAAAAAGTTCATCGAGATCTGCCGTCGGAAGGACGCATCTTCCGCGCGGATC
AAGAAGAACAACAAGGAAAAGGTTGTCAAGTTCAAGGTTCGCTGCCGCAAGTATCTCTACACCCTGGTGCTCAGA
GACGCGGACAAGGCGGAGAAGTTGAAGCAGAGCCTGCCTCCCAATCTGCGTATCCTGGACGTTTCCAAGAAGAAC
TAG
Transcript >OphauB2|1925
ATGCCTCGGGAAGTTGCTGATATCAAAAAGTTCATCGAGATCTGCCGTCGGAAGGACGCATCTTCCGCGCGGATC
AAGAAGAACAACAAGGAAAAGGTTGTCAAGTTCAAGGTTCGCTGCCGCAAGTATCTCTACACCCTGGTGCTCAGA
GACGCGGACAAGGCGGAGAAGTTGAAGCAGAGCCTGCCTCCCAATCTGCGTATCCTGGACGTTTCCAAGAAGAAC
TAG
Gene >OphauB2|1925
ATGCCTCGGGAAGTTGCTGATATCAAAAAGGTAAGGCTCTCAGTCTTCAGGCTCCGGAGCAGGAACAACATGACT
GACCTCGATAGTTCATCGAGATCTGCCGTCGGAAGGACGCATCTTGTAGGTTCCGATTCTAGCTCGCTACAGCGA
CAGCGATTGCCAATGACGGCGAAAAAGACGGCGAGCTGACACAGGAGCTTTAGCCGCGCGGATCAAGAAGAACAA
CAAGGAAAAGGTTGTCAAGTTCAAGGTTCGCTGCCGCAAGTATCTCTACACCCTGGTGCTCAGAGACGCGGACAA
GGCGGAGAAGTTGAAGCAGAGCCTGCCTCCCAGTGCGTCCGCTAGCGCTTTCCCATGACTGCCACGAGAGTTCTG
CTCTGTGCAGTGTGCTACAAGACGCAAAGTCTAACGGGATTACAGATCTGCGTATCCTGGACGTTTCCAAGAAGA
ACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail