© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1897 |
| Gene name | |
| Location | Contig_155:28052..28825 |
| Strand | + |
| Gene length (bp) | 773 |
| Transcript length (bp) | 699 |
| Coding sequence length (bp) | 699 |
| Protein length (aa) | 233 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04588 | HIG_1_N | Hypoxia induced protein conserved region | 1.5E-05 | 135 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3B2|RCF2_SCHPO | Respiratory supercomplex factor 2 homolog C1565.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rcf2 PE=3 SV=1 | 1 | 222 | 1.0E-24 |
| sp|P53721|RCF2_YEAST | Respiratory supercomplex factor 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCF2 PE=1 SV=1 | 1 | 182 | 1.0E-20 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 116 | 135 | 19 |
| 3 | 145 | 167 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1897 MKVLSKEEEEAHYSAVLRGGLIGGSAGLALGLGGVLFASRRYPAFRSLTLPFRTFLVTSTATFGAIVNADRYSVK FQRAQHPESGYRDQSALAMDRVHKAEGPWRRFLDWGRENRYPIVFASWLASMGVSMAIVGRAPISTAQKLVQARV YAQALTLAVLIITACFEMNDAKTGSGRWETVLVLDPNDPEHKHLIEKKIHKEEYEGQDLWMDMVEAEERRMQDKK ASQTKTS* |
| Coding | >OphauB2|1897 ATGAAGGTGCTCAGCAAGGAAGAAGAAGAGGCGCATTACTCGGCCGTGCTTCGAGGTGGCCTCATTGGCGGCAGC GCCGGTCTCGCCCTCGGGCTGGGCGGCGTCTTGTTCGCCTCTCGTCGTTATCCAGCCTTTCGCAGCCTGACGCTC CCCTTTCGCACCTTTCTCGTCACGTCTACGGCAACCTTTGGCGCCATTGTCAATGCAGACCGCTACAGCGTCAAG TTTCAGCGCGCCCAGCATCCCGAGTCTGGCTACCGCGACCAGAGCGCTCTGGCCATGGACCGTGTCCACAAGGCT GAGGGTCCCTGGCGCCGCTTTCTCGATTGGGGCCGCGAGAACCGCTATCCAATTGTCTTTGCCTCGTGGCTTGCC AGCATGGGCGTCTCCATGGCCATTGTCGGCCGCGCTCCCATAAGCACCGCCCAGAAGCTTGTCCAGGCTCGTGTT TATGCCCAGGCCCTTACGCTTGCCGTTCTCATCATTACCGCTTGTTTTGAGATGAATGACGCCAAAACCGGCAGC GGCCGCTGGGAGACGGTCCTGGTGCTTGACCCCAACGATCCCGAGCACAAGCACCTCATCGAGAAGAAGATTCAC AAGGAGGAATATGAAGGCCAAGACTTGTGGATGGACATGGTCGAGGCTGAGGAACGCCGCATGCAGGACAAAAAG GCTTCCCAAACCAAGACGTCATGA |
| Transcript | >OphauB2|1897 ATGAAGGTGCTCAGCAAGGAAGAAGAAGAGGCGCATTACTCGGCCGTGCTTCGAGGTGGCCTCATTGGCGGCAGC GCCGGTCTCGCCCTCGGGCTGGGCGGCGTCTTGTTCGCCTCTCGTCGTTATCCAGCCTTTCGCAGCCTGACGCTC CCCTTTCGCACCTTTCTCGTCACGTCTACGGCAACCTTTGGCGCCATTGTCAATGCAGACCGCTACAGCGTCAAG TTTCAGCGCGCCCAGCATCCCGAGTCTGGCTACCGCGACCAGAGCGCTCTGGCCATGGACCGTGTCCACAAGGCT GAGGGTCCCTGGCGCCGCTTTCTCGATTGGGGCCGCGAGAACCGCTATCCAATTGTCTTTGCCTCGTGGCTTGCC AGCATGGGCGTCTCCATGGCCATTGTCGGCCGCGCTCCCATAAGCACCGCCCAGAAGCTTGTCCAGGCTCGTGTT TATGCCCAGGCCCTTACGCTTGCCGTTCTCATCATTACCGCTTGTTTTGAGATGAATGACGCCAAAACCGGCAGC GGCCGCTGGGAGACGGTCCTGGTGCTTGACCCCAACGATCCCGAGCACAAGCACCTCATCGAGAAGAAGATTCAC AAGGAGGAATATGAAGGCCAAGACTTGTGGATGGACATGGTCGAGGCTGAGGAACGCCGCATGCAGGACAAAAAG GCTTCCCAAACCAAGACGTCATGA |
| Gene | >OphauB2|1897 ATGAAGGTGCTCAGCAAGGAAGAAGAAGAGGCGCATTACTCGGCCGTGCTTCGAGGTGGCCTCATTGGCGGCAGC GCCGGTCTCGCCCTCGGGCTGGGCGGCGTCTTGTTCGCCTCTCGTCGTTATCCAGCCTTTCGCAGCCTGACGCTC CCCTTTCGCACCTTTCTCGTCACGTCTACGGCAACCTTTGGCGCCATTGTCAATGCAGACCGCTACAGCGTCAAG TTTCAGCGCGCCCAGCATCCCGAGTCTGGCTACCGCGACCAGAGCGCTCTGGCCATGGACCGTGTCCACAAGGCT GAGGGTCCCTGGCGCCGCTTTCTCGATTGGGGCCGCGAGAACCGCTATCCAATTGTCTTTGCCTCGTGGCTTGCC AGCATGGGCGTCTCCATGGCCATTGTCGGCCGCGCTCCCATAAGCACCGCCCAGAAGCTTGTCCAGGCTCGTGTT TATGCCCAGGCCCTTACGCTTGCCGTTCTCATCATTACCGCTTGTTTTGAGATGAATGACGCCAAAACCGGCAGC GGCCGCTGGGAGACGGTCCTGGTGCTTGACCCCAACGATCCCGAGCACAAGCACCTCATCGAGAAGAAGATTCAC AAGGAGGAATATGAAGGCCAAGACTTGTGGATGGGTAAGCGTCCCATCATGTCCATCTTCAATGACCCATTATTG CACCGCTTGCGCTGACGCTGATGTGTGATCAAGACATGGTCGAGGCTGAGGAACGCCGCATGCAGGACAAAAAGG CTTCCCAAACCAAGACGTCATGA |