© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1856 |
| Gene name | |
| Location | Contig_152:47587..48505 |
| Strand | - |
| Gene length (bp) | 918 |
| Transcript length (bp) | 741 |
| Coding sequence length (bp) | 741 |
| Protein length (aa) | 247 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09802 | Sec66 | Preprotein translocase subunit Sec66 | 1.3E-75 | 7 | 188 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UUA4|SEC66_SCHPO | Translocation protein sec66 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec66 PE=1 SV=1 | 8 | 183 | 2.0E-31 |
| sp|P33754|SEC66_YEAST | Translocation protein SEC66 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC66 PE=1 SV=1 | 12 | 180 | 2.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031204 | post-translational protein targeting to membrane, translocation | Yes |
| GO:0031207 | Sec62/Sec63 complex | Yes |
| GO:0006810 | transport | No |
| GO:0051641 | cellular localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0005575 | cellular_component | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0015031 | protein transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0051179 | localization | No |
| GO:0006886 | intracellular protein transport | No |
| GO:0071806 | protein transmembrane transport | No |
| GO:0065002 | intracellular protein transmembrane transport | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0098796 | membrane protein complex | No |
| GO:0051234 | establishment of localization | No |
| GO:0008104 | protein localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1856 MLGVDWKGLALPLAYLLVLGGALMIFSTMHRKRKAAQSANLAPWFGPNLQRNVYLSLLHMGPDQGAEKSPRVPDS VLRASLLRRAVEDIERLIQIKSAKQACSSLLLRGSVGDDLWQRFQRAEKEMEEELRDVVTEANALAPSWGPVIFQ SAHEIAANTRLRKRLTQIQAQTESEKQWWEKRRSQIQTAFIKELDGSEVGSTKATSEDDAVLIDTPAKGGKRGKR HVYARARFLRRIKMGAAGKRA* |
| Coding | >OphauB2|1856 ATGCTGGGTGTCGATTGGAAGGGGCTGGCGCTTCCCTTGGCCTACCTGCTGGTCCTGGGCGGCGCCCTCATGATC TTCTCAACCATGCATCGCAAACGCAAAGCCGCCCAGAGCGCAAACCTGGCGCCGTGGTTTGGCCCTAATCTGCAG CGCAATGTCTACTTGTCGCTGCTGCACATGGGCCCCGACCAAGGCGCCGAAAAGTCGCCCCGAGTCCCCGACAGC GTCTTGAGGGCTAGTCTGCTGCGTCGTGCCGTCGAGGACATTGAGCGCCTCATCCAAATCAAGTCGGCCAAGCAG GCCTGCAGCTCCCTACTGCTGCGCGGCAGCGTGGGCGACGACCTGTGGCAGCGCTTCCAGCGTGCCGAAAAGGAA ATGGAGGAGGAGCTCCGAGATGTTGTCACCGAGGCCAATGCTCTGGCACCCAGCTGGGGCCCCGTCATTTTCCAA TCGGCCCATGAGATTGCTGCCAATACGCGGCTACGCAAGCGACTCACCCAGATCCAGGCACAGACCGAGTCGGAG AAGCAGTGGTGGGAGAAGCGGCGAAGCCAGATTCAGACGGCCTTCATCAAGGAGCTCGACGGCTCCGAAGTTGGC TCCACCAAGGCGACGAGCGAGGATGACGCTGTGCTCATTGACACCCCGGCAAAAGGCGGCAAAAGGGGTAAGAGA CACGTCTACGCACGCGCCAGGTTTTTGAGACGCATCAAAATGGGAGCGGCGGGCAAAAGGGCTTAG |
| Transcript | >OphauB2|1856 ATGCTGGGTGTCGATTGGAAGGGGCTGGCGCTTCCCTTGGCCTACCTGCTGGTCCTGGGCGGCGCCCTCATGATC TTCTCAACCATGCATCGCAAACGCAAAGCCGCCCAGAGCGCAAACCTGGCGCCGTGGTTTGGCCCTAATCTGCAG CGCAATGTCTACTTGTCGCTGCTGCACATGGGCCCCGACCAAGGCGCCGAAAAGTCGCCCCGAGTCCCCGACAGC GTCTTGAGGGCTAGTCTGCTGCGTCGTGCCGTCGAGGACATTGAGCGCCTCATCCAAATCAAGTCGGCCAAGCAG GCCTGCAGCTCCCTACTGCTGCGCGGCAGCGTGGGCGACGACCTGTGGCAGCGCTTCCAGCGTGCCGAAAAGGAA ATGGAGGAGGAGCTCCGAGATGTTGTCACCGAGGCCAATGCTCTGGCACCCAGCTGGGGCCCCGTCATTTTCCAA TCGGCCCATGAGATTGCTGCCAATACGCGGCTACGCAAGCGACTCACCCAGATCCAGGCACAGACCGAGTCGGAG AAGCAGTGGTGGGAGAAGCGGCGAAGCCAGATTCAGACGGCCTTCATCAAGGAGCTCGACGGCTCCGAAGTTGGC TCCACCAAGGCGACGAGCGAGGATGACGCTGTGCTCATTGACACCCCGGCAAAAGGCGGCAAAAGGGGTAAGAGA CACGTCTACGCACGCGCCAGGTTTTTGAGACGCATCAAAATGGGAGCGGCGGGCAAAAGGGCTTAG |
| Gene | >OphauB2|1856 ATGCTGGGTGTCGATTGGAAGGGGCTGGCGCTTCCCTTGGCCTACCTGCTGGTCCTGGGCGGCGCCCTCATGATC TTCTCAACCATGCATCGCAAACGCAAAGCCGGTACGCATGACAAGCCAATGCCGAGAAATGACTCTGACGCTGTT TGCTATCATGTAGCCCAGAGCGCAAACCTGGCGCCGTGGTTTGGCCCTAATCTGCAGCGCAATGTCTACTTGTCG CTGCTGCACATGGGCCCCGACCAAGGCGCCGAAAAGTCGCCCCGAGTCCCCGACAGCGTCTTGAGGGCTAGTCTG CTGCGTCGTGCCGTCGAGGACATTGAGCGCCTCATCCAAATCAAGTCGGCCAAGCAGGCCTGCAGCTCCCTACTG CTGCGCGGCAGCGTGGGCGACGACCTGTGGCAGCGCTTCCAGCGTGCCGAAAAGGAAATGGAGGAGGAGCTCCGA GATGTTGTCACCGAGGTGCGTCCTTGGCCGCTCGCCTTGCGGCAACTTGAGGCTGACGCGAGGAACCAACAGGCC AATGCTCTGGCACCCAGCTGGGGCCCCGTCATTTTCCAATCGGCCCATGAGATTGCTGCCAATACGCGGCTACGC AAGCGACTCACCCAGATCCAGGCACAGACCGAGTCGGAGAAGCAGTGGTGGGAGAAGCGGCGAAGCCAGATTCAG ACGGCCTTCATCAAGGAGCTCGACGGCTCCGAAGTTGGCTCCACCAAGGCGACGAGCGAGGATGACGCTGTGCTC ATTGACACCCCGGCAAAAGGCGGCAAAAGGGGTAAGAGGTGAAGCAGGATGCAAGATGCAGGATGCAGGCTTGGT TTGTGGACTTGGTTTCTGGACTGCAGACACGTCTACGCACGCGCCAGGTTTTTGAGACGCATCAAAATGGGAGCG GCGGGCAAAAGGGCTTAG |