© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1805 |
| Gene name | |
| Location | Contig_150:13589..14756 |
| Strand | - |
| Gene length (bp) | 1167 |
| Transcript length (bp) | 1098 |
| Coding sequence length (bp) | 1098 |
| Protein length (aa) | 366 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00742 | Homoserine_dh | Homoserine dehydrogenase | 1.5E-52 | 155 | 358 |
| PF03447 | NAD_binding_3 | Homoserine dehydrogenase, NAD binding domain | 2.7E-18 | 13 | 147 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5B998|DHOM_EMENI | Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882 PE=1 SV=1 | 7 | 364 | 4.0E-137 |
| sp|P31116|DHOM_YEAST | Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM6 PE=1 SV=1 | 7 | 364 | 2.0E-113 |
| sp|O94671|DHOM_SCHPO | Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1 | 6 | 364 | 4.0E-107 |
| sp|P49079|AKH1_MAIZE | Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1 | 9 | 364 | 1.0E-86 |
| sp|P49080|AKH2_MAIZE | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1 | 91 | 364 | 2.0E-80 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5B998|DHOM_EMENI | Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882 PE=1 SV=1 | 7 | 364 | 4.0E-137 |
| sp|P31116|DHOM_YEAST | Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM6 PE=1 SV=1 | 7 | 364 | 2.0E-113 |
| sp|O94671|DHOM_SCHPO | Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1 | 6 | 364 | 4.0E-107 |
| sp|P49079|AKH1_MAIZE | Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1 | 9 | 364 | 1.0E-86 |
| sp|P49080|AKH2_MAIZE | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1 | 91 | 364 | 2.0E-80 |
| sp|Q9SA18|AKH1_ARATH | Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1 | 90 | 361 | 1.0E-79 |
| sp|P37142|AKH_DAUCA | Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1 | 7 | 364 | 6.0E-77 |
| sp|O81852|AKH2_ARATH | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1 | 9 | 364 | 2.0E-74 |
| sp|P27725|AK1H_SERMA | Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1 | 31 | 359 | 2.0E-66 |
| sp|Q89AR4|AKH_BUCBP | Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=thrA PE=3 SV=1 | 9 | 360 | 5.0E-64 |
| sp|Q8K9U9|AKH_BUCAP | Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrA PE=3 SV=1 | 7 | 360 | 4.0E-60 |
| sp|P44505|AKH_HAEIN | Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1 | 32 | 359 | 3.0E-59 |
| sp|P57290|AKH_BUCAI | Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1 | 7 | 359 | 1.0E-58 |
| sp|P00561|AK1H_ECOLI | Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2 | 31 | 359 | 2.0E-56 |
| sp|P00562|AK2H_ECOLI | Bifunctional aspartokinase/homoserine dehydrogenase 2 OS=Escherichia coli (strain K12) GN=metL PE=1 SV=3 | 3 | 361 | 2.0E-52 |
| sp|P19582|DHOM_BACSU | Homoserine dehydrogenase OS=Bacillus subtilis (strain 168) GN=hom PE=1 SV=2 | 108 | 364 | 3.0E-17 |
| sp|P52985|DHOM_LACLC | Homoserine dehydrogenase OS=Lactococcus lactis subsp. cremoris GN=hom PE=3 SV=1 | 108 | 364 | 3.0E-16 |
| sp|P52986|DHOM_SYNY3 | Homoserine dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hom PE=3 SV=1 | 73 | 365 | 3.0E-15 |
| sp|P29365|DHOM_PSEAE | Homoserine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hom PE=3 SV=2 | 108 | 360 | 1.0E-14 |
| sp|Q9CGD8|DHOM_LACLA | Homoserine dehydrogenase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=hom PE=3 SV=1 | 112 | 363 | 1.0E-14 |
| sp|Q58997|DHOM_METJA | Homoserine dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hom PE=3 SV=1 | 115 | 360 | 3.0E-13 |
| sp|P08499|DHOM_CORGL | Homoserine dehydrogenase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=hom PE=1 SV=1 | 108 | 361 | 3.0E-12 |
| sp|Q9ZL20|DHOM_HELPJ | Homoserine dehydrogenase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=hom PE=3 SV=1 | 147 | 365 | 7.0E-11 |
| sp|P56429|DHOM_HELPY | Homoserine dehydrogenase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=hom PE=3 SV=1 | 147 | 365 | 9.0E-11 |
| sp|P46806|DHOM_MYCLE | Homoserine dehydrogenase OS=Mycobacterium leprae (strain TN) GN=hom PE=3 SV=1 | 108 | 361 | 4.0E-10 |
| sp|P37144|DHON_METGL | Homoserine dehydrogenase OS=Methylobacillus glycogenes GN=hom PE=3 SV=1 | 168 | 241 | 6.0E-07 |
| sp|P9WPX1|DHOM_MYCTU | Homoserine dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=hom PE=1 SV=1 | 108 | 361 | 8.0E-07 |
| sp|P9WPX0|DHOM_MYCTO | Homoserine dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=hom PE=3 SV=1 | 108 | 361 | 8.0E-07 |
| sp|P63630|DHOM_MYCBO | Homoserine dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=hom PE=3 SV=1 | 108 | 361 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0006520 | cellular amino acid metabolic process | Yes |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3967 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1805 MGAANQIYIAVIGAGGVGKCFLSQLHGLAARKQSLKFRLCYISTSRKALYNDDYSEIAADGALEALAASSNAPLA LPKIVDYLAAAPSRAILVDNTSSQDVADSYPLALGRGISVVTPNKKAFSGSYKLWKDIFTAAAMSGAKVYHESSV GAGLPVISTLKDLVDTGDRITKIEGVFSGTMSFLFNSFAPVEGKGGKWSDEVKKAKSLGYTEPDPRDDLNGLDVA RKLTILARLAGLAIESPTSFPVQSLIPKELETCNTGDEFLAKLPEFDQQMEKIKADAESAGKVVRFVGSIDVGAG KVKVGLESFDRSHPIAALKGSDNIISFYTERYGSNPLIVQGAGAGGEVTAMGVTGDLLKVAAQIS* |
| Coding | >OphauB2|1805 ATGGGTGCTGCGAACCAAATCTACATTGCTGTCATCGGTGCTGGCGGCGTCGGCAAGTGCTTCCTCTCTCAGCTG CACGGCCTGGCAGCCCGTAAGCAGTCGCTCAAATTCCGTCTCTGCTACATCTCAACCAGCCGCAAAGCATTGTAC AATGATGACTACTCCGAGATCGCGGCAGATGGCGCCCTCGAGGCTTTAGCCGCATCCTCCAACGCCCCCCTCGCC CTACCAAAGATTGTCGACTATCTTGCAGCAGCTCCGTCCAGGGCCATCCTCGTCGACAACACCAGCTCTCAGGAT GTTGCCGACAGCTATCCGCTGGCGCTCGGACGAGGCATCAGCGTTGTCACTCCCAATAAGAAGGCCTTTTCCGGC TCATACAAGCTCTGGAAAGACATATTCACGGCGGCCGCCATGTCTGGAGCAAAAGTTTACCATGAATCGTCGGTC GGTGCCGGACTGCCTGTTATTTCAACGCTCAAAGACTTGGTCGATACAGGAGACCGCATCACCAAGATTGAAGGA GTCTTTAGTGGGACCATGTCCTTCCTCTTCAACTCGTTTGCCCCTGTCGAGGGCAAGGGCGGCAAATGGTCCGAC GAGGTCAAAAAGGCAAAATCGCTTGGTTACACAGAGCCAGATCCACGAGACGACTTGAACGGGCTCGATGTGGCG CGCAAGTTAACCATTTTGGCGCGCCTTGCCGGTCTTGCCATTGAGTCGCCGACATCTTTCCCTGTGCAAAGCCTG ATCCCAAAGGAGCTAGAGACATGCAACACTGGCGATGAGTTTCTCGCTAAACTGCCCGAATTCGACCAGCAAATG GAAAAGATCAAGGCCGACGCCGAGAGCGCTGGAAAGGTGGTGCGCTTCGTGGGCAGCATCGACGTGGGTGCAGGA AAAGTCAAGGTTGGACTGGAATCATTTGATCGATCACATCCCATTGCAGCCCTCAAGGGAAGCGACAACATCATC AGCTTCTATACCGAGAGATACGGCAGCAACCCGTTGATTGTGCAGGGCGCGGGAGCTGGCGGAGAGGTAACAGCC ATGGGAGTGACGGGAGACTTGCTCAAAGTCGCGGCCCAAATTTCCTAA |
| Transcript | >OphauB2|1805 ATGGGTGCTGCGAACCAAATCTACATTGCTGTCATCGGTGCTGGCGGCGTCGGCAAGTGCTTCCTCTCTCAGCTG CACGGCCTGGCAGCCCGTAAGCAGTCGCTCAAATTCCGTCTCTGCTACATCTCAACCAGCCGCAAAGCATTGTAC AATGATGACTACTCCGAGATCGCGGCAGATGGCGCCCTCGAGGCTTTAGCCGCATCCTCCAACGCCCCCCTCGCC CTACCAAAGATTGTCGACTATCTTGCAGCAGCTCCGTCCAGGGCCATCCTCGTCGACAACACCAGCTCTCAGGAT GTTGCCGACAGCTATCCGCTGGCGCTCGGACGAGGCATCAGCGTTGTCACTCCCAATAAGAAGGCCTTTTCCGGC TCATACAAGCTCTGGAAAGACATATTCACGGCGGCCGCCATGTCTGGAGCAAAAGTTTACCATGAATCGTCGGTC GGTGCCGGACTGCCTGTTATTTCAACGCTCAAAGACTTGGTCGATACAGGAGACCGCATCACCAAGATTGAAGGA GTCTTTAGTGGGACCATGTCCTTCCTCTTCAACTCGTTTGCCCCTGTCGAGGGCAAGGGCGGCAAATGGTCCGAC GAGGTCAAAAAGGCAAAATCGCTTGGTTACACAGAGCCAGATCCACGAGACGACTTGAACGGGCTCGATGTGGCG CGCAAGTTAACCATTTTGGCGCGCCTTGCCGGTCTTGCCATTGAGTCGCCGACATCTTTCCCTGTGCAAAGCCTG ATCCCAAAGGAGCTAGAGACATGCAACACTGGCGATGAGTTTCTCGCTAAACTGCCCGAATTCGACCAGCAAATG GAAAAGATCAAGGCCGACGCCGAGAGCGCTGGAAAGGTGGTGCGCTTCGTGGGCAGCATCGACGTGGGTGCAGGA AAAGTCAAGGTTGGACTGGAATCATTTGATCGATCACATCCCATTGCAGCCCTCAAGGGAAGCGACAACATCATC AGCTTCTATACCGAGAGATACGGCAGCAACCCGTTGATTGTGCAGGGCGCGGGAGCTGGCGGAGAGGTAACAGCC ATGGGAGTGACGGGAGACTTGCTCAAAGTCGCGGCCCAAATTTCCTAA |
| Gene | >OphauB2|1805 ATGGGTGCTGCGAACCAAATCTACATTGCTGTCATCGGTAAGTTGCTGCGAATGGCAAAATTTAAATGTGTATTG TACAGAGATTCCGTCACTAATACATGGACAGGTGCTGGCGGCGTCGGCAAGTGCTTCCTCTCTCAGCTGCACGGC CTGGCAGCCCGTAAGCAGTCGCTCAAATTCCGTCTCTGCTACATCTCAACCAGCCGCAAAGCATTGTACAATGAT GACTACTCCGAGATCGCGGCAGATGGCGCCCTCGAGGCTTTAGCCGCATCCTCCAACGCCCCCCTCGCCCTACCA AAGATTGTCGACTATCTTGCAGCAGCTCCGTCCAGGGCCATCCTCGTCGACAACACCAGCTCTCAGGATGTTGCC GACAGCTATCCGCTGGCGCTCGGACGAGGCATCAGCGTTGTCACTCCCAATAAGAAGGCCTTTTCCGGCTCATAC AAGCTCTGGAAAGACATATTCACGGCGGCCGCCATGTCTGGAGCAAAAGTTTACCATGAATCGTCGGTCGGTGCC GGACTGCCTGTTATTTCAACGCTCAAAGACTTGGTCGATACAGGAGACCGCATCACCAAGATTGAAGGAGTCTTT AGTGGGACCATGTCCTTCCTCTTCAACTCGTTTGCCCCTGTCGAGGGCAAGGGCGGCAAATGGTCCGACGAGGTC AAAAAGGCAAAATCGCTTGGTTACACAGAGCCAGATCCACGAGACGACTTGAACGGGCTCGATGTGGCGCGCAAG TTAACCATTTTGGCGCGCCTTGCCGGTCTTGCCATTGAGTCGCCGACATCTTTCCCTGTGCAAAGCCTGATCCCA AAGGAGCTAGAGACATGCAACACTGGCGATGAGTTTCTCGCTAAACTGCCCGAATTCGACCAGCAAATGGAAAAG ATCAAGGCCGACGCCGAGAGCGCTGGAAAGGTGGTGCGCTTCGTGGGCAGCATCGACGTGGGTGCAGGAAAAGTC AAGGTTGGACTGGAATCATTTGATCGATCACATCCCATTGCAGCCCTCAAGGGAAGCGACAACATCATCAGCTTC TATACCGAGAGATACGGCAGCAACCCGTTGATTGTGCAGGGCGCGGGAGCTGGCGGAGAGGTAACAGCCATGGGA GTGACGGGAGACTTGCTCAAAGTCGCGGCCCAAATTTCCTAA |