Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1801
Gene name
LocationContig_150:7310..8493
Strand-
Gene length (bp)1183
Transcript length (bp)936
Coding sequence length (bp)936
Protein length (aa) 312

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01522 Polysacc_deac_1 Polysaccharide deacetylase 3.1E-17 32 140
PF10096 DUF2334 Uncharacterized protein conserved in bacteria (DUF2334) 2.4E-06 63 140

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B5ZA76|PGDAE_HELPG Peptidoglycan deacetylase OS=Helicobacter pylori (strain G27) GN=pgdA PE=1 SV=1 4 284 8.0E-112
sp|O25080|PGDAE_HELPY Peptidoglycan deacetylase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=pgdA PE=1 SV=1 4 284 5.0E-109
sp|O13842|CDA1_SCHPO Chitin deacetylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cda1 PE=1 SV=1 34 283 7.0E-09

GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Yes
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1801
MGKKRALICYGVDVDAVSGWIGSYGGQDSVNDISRVGVERLLKLFGKYNIKCTWFVPGHSLESFPEALEAVRLAG
HEFGLHGYLHENATALTEEQQRDVLDKSYRLLTEFTGKPPRGYTAPWWEMSREGARLLLDYGIEYDHSMSHHDTQ
PYWLPIDMSWTQIDTSQAASSWMQPMGHGGPTGLVEVPANWHLDDLPPLLYMKDVGNSHGFVNARDVEDMWRDHF
DWLWRESDDFVLALTVHPDVSGRPHVLLMHERLIEYFAGHEGVEFVTMGTVVDDFKSKKRVPEGALMPAPRGAGM
EEEAHVASNGG*
Coding >OphauB2|1801
ATGGGCAAGAAACGGGCACTTATATGCTACGGCGTGGATGTGGATGCGGTGTCGGGGTGGATTGGATCATACGGC
GGACAAGACTCGGTCAACGATATTAGCAGAGTGGGCGTGGAGCGGCTGCTCAAGCTGTTTGGCAAATACAACATC
AAGTGCACATGGTTTGTGCCAGGGCACAGCCTGGAATCCTTTCCCGAGGCGCTCGAGGCGGTGCGACTGGCAGGG
CACGAGTTTGGACTGCATGGCTACCTCCACGAAAACGCCACAGCCTTGACGGAGGAGCAGCAGCGCGATGTGTTG
GACAAGTCTTATCGGCTGCTGACTGAGTTTACGGGCAAGCCGCCTCGAGGGTATACGGCGCCGTGGTGGGAAATG
AGCCGCGAGGGAGCACGTCTGCTGCTCGACTATGGCATCGAGTACGACCACTCCATGAGCCACCACGACACGCAG
CCCTACTGGCTCCCAATTGACATGTCGTGGACGCAAATCGACACGTCGCAAGCAGCGTCGAGCTGGATGCAGCCC
ATGGGCCACGGCGGGCCGACGGGGCTGGTGGAAGTGCCGGCCAACTGGCACCTCGACGACCTGCCGCCGCTGCTG
TACATGAAGGACGTGGGCAACAGCCACGGCTTTGTCAATGCGCGCGACGTGGAGGACATGTGGCGCGACCACTTT
GACTGGCTGTGGCGCGAGAGCGACGATTTCGTGCTTGCCCTGACGGTGCATCCCGACGTGAGCGGGCGGCCGCAC
GTGCTGCTCATGCACGAGCGCCTGATTGAGTATTTTGCAGGGCACGAGGGCGTCGAGTTTGTCACCATGGGGACT
GTTGTGGATGACTTCAAGAGCAAGAAGCGGGTGCCCGAGGGGGCCTTGATGCCGGCGCCGCGGGGGGCAGGAATG
GAGGAGGAGGCTCACGTTGCAAGCAATGGGGGCTGA
Transcript >OphauB2|1801
ATGGGCAAGAAACGGGCACTTATATGCTACGGCGTGGATGTGGATGCGGTGTCGGGGTGGATTGGATCATACGGC
GGACAAGACTCGGTCAACGATATTAGCAGAGTGGGCGTGGAGCGGCTGCTCAAGCTGTTTGGCAAATACAACATC
AAGTGCACATGGTTTGTGCCAGGGCACAGCCTGGAATCCTTTCCCGAGGCGCTCGAGGCGGTGCGACTGGCAGGG
CACGAGTTTGGACTGCATGGCTACCTCCACGAAAACGCCACAGCCTTGACGGAGGAGCAGCAGCGCGATGTGTTG
GACAAGTCTTATCGGCTGCTGACTGAGTTTACGGGCAAGCCGCCTCGAGGGTATACGGCGCCGTGGTGGGAAATG
AGCCGCGAGGGAGCACGTCTGCTGCTCGACTATGGCATCGAGTACGACCACTCCATGAGCCACCACGACACGCAG
CCCTACTGGCTCCCAATTGACATGTCGTGGACGCAAATCGACACGTCGCAAGCAGCGTCGAGCTGGATGCAGCCC
ATGGGCCACGGCGGGCCGACGGGGCTGGTGGAAGTGCCGGCCAACTGGCACCTCGACGACCTGCCGCCGCTGCTG
TACATGAAGGACGTGGGCAACAGCCACGGCTTTGTCAATGCGCGCGACGTGGAGGACATGTGGCGCGACCACTTT
GACTGGCTGTGGCGCGAGAGCGACGATTTCGTGCTTGCCCTGACGGTGCATCCCGACGTGAGCGGGCGGCCGCAC
GTGCTGCTCATGCACGAGCGCCTGATTGAGTATTTTGCAGGGCACGAGGGCGTCGAGTTTGTCACCATGGGGACT
GTTGTGGATGACTTCAAGAGCAAGAAGCGGGTGCCCGAGGGGGCCTTGATGCCGGCGCCGCGGGGGGCAGGAATG
GAGGAGGAGGCTCACGTTGCAAGCAATGGGGGCTGA
Gene >OphauB2|1801
ATGGGCAAGAAACGGGCACTTATATGCTACGGCGTGGATGTGGATGCGGTGTCGGGGTGGATTGGATCATACGGC
GGACAAGACTCGGTCAACGATATTAGCAGAGGCGAGTTATCCAAGCTCCGAGAGCGCTTTGAAATTTGGCTCTTT
TAATTTTCCATGGTTCAAGGACAAGACGAGCTGACAAGGGGAGAGTGGGAGGGGGTAAAAAAATATAGGCGTGTT
TGCAGGCACAGTGGGCGTGGAGCGGCTGCTCAAGCTGTTTGGCAAATACAACATCAAGTGCACATGGTTTGTGCC
AGGGCACAGCCTGGAATCCTTTCCCGAGGCGCTCGAGGCGGTGCGACTGGCAGGGCACGAGTTTGGACTGCATGG
CTACCTCCACGAAAACGCCACAGCCTTGACGGAGGAGCAGCAGCGCGATGTGTTGGACAAGTCTTATCGGCTGCT
GACTGAGTTTACGGGCAAGCCGCCTCGAGGGTATACGGCGCCGTGGTGAGTAGTGTGCTGCCCATTTTTGTTTGT
TTGTGAGATTTGGCGCTGGAGGAGGAGGATATAGGAGGCGGAAAAGGCAAAGATGCTGACGTGAGCATTTGCAAA
ATGTACAAACAGGTGGGAAATGAGCCGCGAGGGAGCACGTCTGCTGCTCGACTATGGCATCGAGTACGACCACTC
CATGAGCCACCACGACACGCAGCCCTACTGGCTCCCAATTGACATGTCGTGGACGCAAATCGACACGTCGCAAGC
AGCGTCGAGCTGGATGCAGCCCATGGGCCACGGCGGGCCGACGGGGCTGGTGGAAGTGCCGGCCAACTGGCACCT
CGACGACCTGCCGCCGCTGCTGTACATGAAGGACGTGGGCAACAGCCACGGCTTTGTCAATGCGCGCGACGTGGA
GGACATGTGGCGCGACCACTTTGACTGGCTGTGGCGCGAGAGCGACGATTTCGTGCTTGCCCTGACGGTGCATCC
CGACGTGAGCGGGCGGCCGCACGTGCTGCTCATGCACGAGCGCCTGATTGAGTATTTTGCAGGGCACGAGGGCGT
CGAGTTTGTCACCATGGGGACTGTTGTGGATGACTTCAAGAGCAAGAAGCGGGTGCCCGAGGGGGCCTTGATGCC
GGCGCCGCGGGGGGCAGGAATGGAGGAGGAGGCTCACGTTGCAAGCAATGGGGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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