© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1691 |
| Gene name | |
| Location | Contig_148:35009..37598 |
| Strand | + |
| Gene length (bp) | 2589 |
| Transcript length (bp) | 2517 |
| Coding sequence length (bp) | 2517 |
| Protein length (aa) | 839 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01302 | CAP_GLY | CAP-Gly domain | 5.2E-16 | 125 | 192 |
| PF16641 | CLIP1_ZNF | CLIP1 zinc knuckle | 3.3E-03 | 722 | 737 |
| PF16641 | CLIP1_ZNF | CLIP1 zinc knuckle | 6.3E-04 | 817 | 832 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P79065|TIP1_SCHPO | Tip elongation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tip1 PE=1 SV=1 | 125 | 196 | 6.0E-12 |
| sp|P34531|YM92_CAEEL | Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans GN=M01A8.2 PE=3 SV=4 | 121 | 197 | 8.0E-10 |
| sp|P11709|BIK1_YEAST | Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1 | 125 | 207 | 2.0E-09 |
| sp|O42184|CLIP1_CHICK | CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 | 65 | 207 | 1.0E-08 |
| sp|Q9VJE5|CL190_DROME | Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1 | 100 | 201 | 3.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P79065|TIP1_SCHPO | Tip elongation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tip1 PE=1 SV=1 | 125 | 196 | 6.0E-12 |
| sp|P34531|YM92_CAEEL | Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans GN=M01A8.2 PE=3 SV=4 | 121 | 197 | 8.0E-10 |
| sp|P11709|BIK1_YEAST | Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1 | 125 | 207 | 2.0E-09 |
| sp|O42184|CLIP1_CHICK | CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 | 65 | 207 | 1.0E-08 |
| sp|Q9VJE5|CL190_DROME | Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1 | 100 | 201 | 3.0E-08 |
| sp|P35458|DCTN1_CHICK | Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=1 SV=2 | 123 | 592 | 4.0E-08 |
| sp|P30622|CLIP1_HUMAN | CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 | 122 | 207 | 9.0E-08 |
| sp|O08788|DCTN1_MOUSE | Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3 | 125 | 592 | 1.0E-07 |
| sp|Q922J3|CLIP1_MOUSE | CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1 | 122 | 202 | 1.0E-07 |
| sp|P30622|CLIP1_HUMAN | CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 | 111 | 234 | 8.0E-07 |
| sp|Q9Z0H8|CLIP2_MOUSE | CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2 | 95 | 207 | 2.0E-06 |
| sp|P28023|DCTN1_RAT | Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=1 SV=2 | 125 | 592 | 3.0E-06 |
| sp|O55156|CLIP2_RAT | CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1 | 95 | 207 | 3.0E-06 |
| sp|Q9UDT6|CLIP2_HUMAN | CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1 | 95 | 207 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1691 MAPTATAIATAITTSQHHYNNTNNNTTTTTANRPPPASFARSLRSSKLTASTPDLGASYLSHSRLAPPGLSRKTS LAALTSSTLASIPDVSESYALDSVLSVSDPDSSIMSPVTPSRQSFHDVAVGSAVDVPGGMHGVVRFLGPVQGKKG IFAGIELHSSFASRGKNSGDVDGLTYFTTSTPGAGIFVPVAKISCRASPSASASTAQPMTPTSHVSAGLKNGGGT ALSFTPPNPGFSKLSASVGPGARASSPQGKRPRTSLPRPDSPVRRTQMTPGPRPSLGNPTKTAPRYGSPTNRLAQ SVRGTAGDPSKKQLRPERKPSLGPRSISALGSASAFDDETTPSTFQRAKTNGSVGSVSSFSLKLQRSPSRATTAN TDEIERLRSQLEEKDRQLKEQGTALSEMESSLVELQSLIEHSDGPKPEQVSAQDNDVMQLRHLLREKNDRIASLT AEFDAHRADFRSTIDTLEMASTETERVYERQIEELRNDMRELESRNLDVDSVASQLKQLEELVQELEEGLEDARR GEAEARGEAEFLRGEVERTRSELRREREKSGKDTDETGNSAAAAASRELEQKEDEIRGLKTIIHSLSREAMPESG TDSRPSALRSLTHSGTGETWSGKSTRDQMEHKVAELQAALEKKSLREGELELELEMLRGGSHSTQGSSVLAHHSS QRDSRDTVVPMGSNYSRSPDTTHRRTKTLDTMPESDTVSTATESSTLWCEICETGGHDILTCTKMFGSEDAKSAI ETPSVKGVDRRQGLKPRVAGVAHPAPLAPARAKTPVPTKAPAIKVLPNPMESGPVAGKESGIMDPEKWCAVCERD GHDSVDCPFEEAF* |
| Coding | >OphauB2|1691 ATGGCTCCCACCGCTACCGCAATAGCAACCGCCATCACCACATCCCAGCACCACTATAACAACACTAACAACAAC ACCACCACCACCACTGCCAATAGGCCCCCCCCTGCTTCGTTTGCGCGCTCTCTGCGCAGCTCCAAGCTGACGGCC TCGACTCCTGACTTGGGTGCATCTTACCTCTCTCATTCCCGGCTTGCTCCCCCTGGCCTGTCGCGAAAAACATCC CTCGCCGCCCTGACCTCATCGACGCTTGCAAGCATCCCCGATGTCAGCGAGAGCTACGCCCTTGACTCTGTTCTG AGCGTCTCAGACCCCGACAGCTCAATCATGTCTCCTGTTACGCCTTCGCGGCAGTCTTTTCACGATGTAGCTGTT GGTAGTGCTGTCGACGTCCCTGGAGGCATGCACGGCGTCGTACGCTTTCTCGGCCCTGTCCAGGGCAAAAAAGGC ATCTTTGCTGGCATTGAGCTGCACTCGAGCTTTGCCTCGCGAGGCAAAAACAGCGGCGATGTTGACGGGCTCACT TATTTCACTACTTCAACCCCTGGCGCTGGCATATTTGTCCCTGTTGCCAAGATTTCTTGCCGAGCCTCGCCTTCT GCCTCAGCTTCAACCGCACAGCCAATGACTCCCACGTCCCACGTCTCCGCCGGCCTCAAGAACGGCGGAGGAACT GCGCTCAGCTTCACGCCGCCTAACCCGGGCTTCTCCAAGCTTAGTGCTTCGGTCGGTCCCGGCGCCAGGGCCTCG AGTCCTCAAGGAAAACGTCCCAGGACGTCGCTGCCTCGCCCCGACTCTCCTGTTCGTCGCACGCAAATGACACCC GGCCCTCGGCCATCCTTGGGCAACCCAACAAAGACGGCCCCACGCTACGGGAGCCCTACAAATCGACTGGCTCAA AGTGTTCGCGGCACTGCGGGGGATCCCAGCAAGAAACAGCTCAGACCTGAGCGCAAACCAAGTCTTGGACCTCGA AGTATTTCGGCACTAGGGTCCGCCTCTGCCTTTGACGATGAGACAACTCCTTCCACTTTCCAGCGTGCAAAAACA AATGGAAGTGTTGGGTCTGTTTCGTCTTTTAGTCTCAAGCTTCAACGTTCTCCATCGCGCGCTACCACTGCCAAT ACCGACGAGATTGAACGCCTTCGTTCTCAGCTCGAGGAAAAGGACCGCCAGCTTAAAGAACAGGGCACAGCGCTT TCCGAGATGGAAAGTAGTCTTGTCGAGCTTCAGTCTCTTATAGAGCACTCAGACGGTCCCAAGCCTGAACAAGTC AGCGCCCAAGACAACGATGTGATGCAGCTACGACATTTGCTTCGAGAGAAAAACGACAGGATTGCTTCGCTAACT GCAGAATTTGATGCTCATCGGGCAGACTTTCGGAGCACCATTGACACTCTTGAGATGGCCAGCACAGAAACGGAG CGCGTATATGAAAGGCAGATTGAAGAGCTCAGAAACGATATGCGGGAACTCGAGTCTAGAAACCTTGACGTTGAC TCTGTTGCAAGCCAGCTCAAGCAGCTAGAGGAGCTGGTCCAAGAACTCGAAGAGGGTCTTGAGGATGCTCGTCGC GGCGAGGCAGAAGCTCGTGGCGAGGCCGAGTTTCTCCGAGGAGAGGTGGAGAGAACACGGTCGGAATTGCGTCGT GAGCGAGAAAAAAGTGGCAAGGACACGGATGAAACAGGCAATTCTGCTGCAGCAGCTGCTTCTAGGGAGCTGGAG CAGAAGGAAGATGAAATCCGCGGCCTCAAGACCATCATTCACTCGCTTAGTCGAGAAGCAATGCCGGAATCGGGC ACAGACTCCCGTCCCTCGGCATTACGTTCACTGACGCACAGCGGTACTGGGGAGACTTGGAGTGGCAAGAGCACG CGCGATCAAATGGAACACAAGGTTGCCGAGCTGCAGGCTGCCTTGGAGAAGAAGAGTCTACGTGAAGGAGAGCTT GAACTGGAGCTCGAGATGCTACGCGGAGGGAGCCATAGCACCCAAGGCAGCTCGGTGCTAGCTCACCACTCGTCT CAACGGGACTCGCGCGACACAGTGGTTCCCATGGGAAGCAACTACTCGCGGTCTCCCGACACGACGCACAGGCGA ACAAAGACGCTCGACACAATGCCCGAAAGCGACACTGTGTCGACGGCCACAGAATCTAGCACCTTGTGGTGTGAG ATTTGCGAGACTGGTGGTCACGACATCCTGACTTGCACCAAGATGTTTGGCTCCGAGGACGCAAAGAGCGCCATT GAGACTCCATCTGTCAAGGGCGTGGACAGACGTCAAGGTCTCAAGCCTCGTGTAGCCGGTGTCGCTCATCCTGCG CCTCTAGCTCCGGCCCGGGCAAAGACACCTGTGCCGACCAAGGCGCCTGCCATTAAGGTTCTTCCCAATCCCATG GAGTCTGGGCCCGTTGCCGGCAAAGAGAGTGGCATCATGGATCCTGAGAAGTGGTGTGCTGTGTGTGAACGTGAT GGCCACGACAGCGTCGACTGTCCATTTGAGGAGGCCTTTTAG |
| Transcript | >OphauB2|1691 ATGGCTCCCACCGCTACCGCAATAGCAACCGCCATCACCACATCCCAGCACCACTATAACAACACTAACAACAAC ACCACCACCACCACTGCCAATAGGCCCCCCCCTGCTTCGTTTGCGCGCTCTCTGCGCAGCTCCAAGCTGACGGCC TCGACTCCTGACTTGGGTGCATCTTACCTCTCTCATTCCCGGCTTGCTCCCCCTGGCCTGTCGCGAAAAACATCC CTCGCCGCCCTGACCTCATCGACGCTTGCAAGCATCCCCGATGTCAGCGAGAGCTACGCCCTTGACTCTGTTCTG AGCGTCTCAGACCCCGACAGCTCAATCATGTCTCCTGTTACGCCTTCGCGGCAGTCTTTTCACGATGTAGCTGTT GGTAGTGCTGTCGACGTCCCTGGAGGCATGCACGGCGTCGTACGCTTTCTCGGCCCTGTCCAGGGCAAAAAAGGC ATCTTTGCTGGCATTGAGCTGCACTCGAGCTTTGCCTCGCGAGGCAAAAACAGCGGCGATGTTGACGGGCTCACT TATTTCACTACTTCAACCCCTGGCGCTGGCATATTTGTCCCTGTTGCCAAGATTTCTTGCCGAGCCTCGCCTTCT GCCTCAGCTTCAACCGCACAGCCAATGACTCCCACGTCCCACGTCTCCGCCGGCCTCAAGAACGGCGGAGGAACT GCGCTCAGCTTCACGCCGCCTAACCCGGGCTTCTCCAAGCTTAGTGCTTCGGTCGGTCCCGGCGCCAGGGCCTCG AGTCCTCAAGGAAAACGTCCCAGGACGTCGCTGCCTCGCCCCGACTCTCCTGTTCGTCGCACGCAAATGACACCC GGCCCTCGGCCATCCTTGGGCAACCCAACAAAGACGGCCCCACGCTACGGGAGCCCTACAAATCGACTGGCTCAA AGTGTTCGCGGCACTGCGGGGGATCCCAGCAAGAAACAGCTCAGACCTGAGCGCAAACCAAGTCTTGGACCTCGA AGTATTTCGGCACTAGGGTCCGCCTCTGCCTTTGACGATGAGACAACTCCTTCCACTTTCCAGCGTGCAAAAACA AATGGAAGTGTTGGGTCTGTTTCGTCTTTTAGTCTCAAGCTTCAACGTTCTCCATCGCGCGCTACCACTGCCAAT ACCGACGAGATTGAACGCCTTCGTTCTCAGCTCGAGGAAAAGGACCGCCAGCTTAAAGAACAGGGCACAGCGCTT TCCGAGATGGAAAGTAGTCTTGTCGAGCTTCAGTCTCTTATAGAGCACTCAGACGGTCCCAAGCCTGAACAAGTC AGCGCCCAAGACAACGATGTGATGCAGCTACGACATTTGCTTCGAGAGAAAAACGACAGGATTGCTTCGCTAACT GCAGAATTTGATGCTCATCGGGCAGACTTTCGGAGCACCATTGACACTCTTGAGATGGCCAGCACAGAAACGGAG CGCGTATATGAAAGGCAGATTGAAGAGCTCAGAAACGATATGCGGGAACTCGAGTCTAGAAACCTTGACGTTGAC TCTGTTGCAAGCCAGCTCAAGCAGCTAGAGGAGCTGGTCCAAGAACTCGAAGAGGGTCTTGAGGATGCTCGTCGC GGCGAGGCAGAAGCTCGTGGCGAGGCCGAGTTTCTCCGAGGAGAGGTGGAGAGAACACGGTCGGAATTGCGTCGT GAGCGAGAAAAAAGTGGCAAGGACACGGATGAAACAGGCAATTCTGCTGCAGCAGCTGCTTCTAGGGAGCTGGAG CAGAAGGAAGATGAAATCCGCGGCCTCAAGACCATCATTCACTCGCTTAGTCGAGAAGCAATGCCGGAATCGGGC ACAGACTCCCGTCCCTCGGCATTACGTTCACTGACGCACAGCGGTACTGGGGAGACTTGGAGTGGCAAGAGCACG CGCGATCAAATGGAACACAAGGTTGCCGAGCTGCAGGCTGCCTTGGAGAAGAAGAGTCTACGTGAAGGAGAGCTT GAACTGGAGCTCGAGATGCTACGCGGAGGGAGCCATAGCACCCAAGGCAGCTCGGTGCTAGCTCACCACTCGTCT CAACGGGACTCGCGCGACACAGTGGTTCCCATGGGAAGCAACTACTCGCGGTCTCCCGACACGACGCACAGGCGA ACAAAGACGCTCGACACAATGCCCGAAAGCGACACTGTGTCGACGGCCACAGAATCTAGCACCTTGTGGTGTGAG ATTTGCGAGACTGGTGGTCACGACATCCTGACTTGCACCAAGATGTTTGGCTCCGAGGACGCAAAGAGCGCCATT GAGACTCCATCTGTCAAGGGCGTGGACAGACGTCAAGGTCTCAAGCCTCGTGTAGCCGGTGTCGCTCATCCTGCG CCTCTAGCTCCGGCCCGGGCAAAGACACCTGTGCCGACCAAGGCGCCTGCCATTAAGGTTCTTCCCAATCCCATG GAGTCTGGGCCCGTTGCCGGCAAAGAGAGTGGCATCATGGATCCTGAGAAGTGGTGTGCTGTGTGTGAACGTGAT GGCCACGACAGCGTCGACTGTCCATTTGAGGAGGCCTTTTAG |
| Gene | >OphauB2|1691 ATGGCTCCCACCGCTACCGCAATAGCAACCGCCATCACCACATCCCAGCACCACTATAACAACACTAACAACAAC ACCACCACCACCACTGCCAATAGGCCCCCCCCTGCTTCGTTTGCGCGCTCTCTGCGCAGCTCCAAGCTGACGGCC TCGACTCCTGACTTGGGTGCATCTTACCTCTCTCATTCCCGGCTTGCTCCCCCTGGCCTGTCGCGAAAAACATCC CTCGCCGCCCTGACCTCATCGACGCTTGCAAGCATCCCCGATGTCAGCGAGAGCTACGCCCTTGACTCTGTTCTG AGCGTCTCAGACCCCGACAGCTCAATCATGTCTCCTGTTACGCCTTCGCGGCAGTCTTTTCACGATGTAGCTGTT GGTAGTGCTGTCGACGTCCCTGGAGGCATGCACGGCGTCGTACGCTTTCTCGGCCCTGTCCAGGGCAAAAAAGGC ATCTTTGCTGGCATTGAGCTGCACTCGAGCTTTGCCTCGCGAGGCAAAAACAGCGGCGATGTTGACGGGTATATG ATCCTCTGCGCCGTTTGCACTCTCGTGAGACATGGCTAATATCTTTTCTTCTCCCTTGCTATCAGGCTCACTTAT TTCACTACTTCAACCCCTGGCGCTGGCATATTTGTCCCTGTTGCCAAGATTTCTTGCCGAGCCTCGCCTTCTGCC TCAGCTTCAACCGCACAGCCAATGACTCCCACGTCCCACGTCTCCGCCGGCCTCAAGAACGGCGGAGGAACTGCG CTCAGCTTCACGCCGCCTAACCCGGGCTTCTCCAAGCTTAGTGCTTCGGTCGGTCCCGGCGCCAGGGCCTCGAGT CCTCAAGGAAAACGTCCCAGGACGTCGCTGCCTCGCCCCGACTCTCCTGTTCGTCGCACGCAAATGACACCCGGC CCTCGGCCATCCTTGGGCAACCCAACAAAGACGGCCCCACGCTACGGGAGCCCTACAAATCGACTGGCTCAAAGT GTTCGCGGCACTGCGGGGGATCCCAGCAAGAAACAGCTCAGACCTGAGCGCAAACCAAGTCTTGGACCTCGAAGT ATTTCGGCACTAGGGTCCGCCTCTGCCTTTGACGATGAGACAACTCCTTCCACTTTCCAGCGTGCAAAAACAAAT GGAAGTGTTGGGTCTGTTTCGTCTTTTAGTCTCAAGCTTCAACGTTCTCCATCGCGCGCTACCACTGCCAATACC GACGAGATTGAACGCCTTCGTTCTCAGCTCGAGGAAAAGGACCGCCAGCTTAAAGAACAGGGCACAGCGCTTTCC GAGATGGAAAGTAGTCTTGTCGAGCTTCAGTCTCTTATAGAGCACTCAGACGGTCCCAAGCCTGAACAAGTCAGC GCCCAAGACAACGATGTGATGCAGCTACGACATTTGCTTCGAGAGAAAAACGACAGGATTGCTTCGCTAACTGCA GAATTTGATGCTCATCGGGCAGACTTTCGGAGCACCATTGACACTCTTGAGATGGCCAGCACAGAAACGGAGCGC GTATATGAAAGGCAGATTGAAGAGCTCAGAAACGATATGCGGGAACTCGAGTCTAGAAACCTTGACGTTGACTCT GTTGCAAGCCAGCTCAAGCAGCTAGAGGAGCTGGTCCAAGAACTCGAAGAGGGTCTTGAGGATGCTCGTCGCGGC GAGGCAGAAGCTCGTGGCGAGGCCGAGTTTCTCCGAGGAGAGGTGGAGAGAACACGGTCGGAATTGCGTCGTGAG CGAGAAAAAAGTGGCAAGGACACGGATGAAACAGGCAATTCTGCTGCAGCAGCTGCTTCTAGGGAGCTGGAGCAG AAGGAAGATGAAATCCGCGGCCTCAAGACCATCATTCACTCGCTTAGTCGAGAAGCAATGCCGGAATCGGGCACA GACTCCCGTCCCTCGGCATTACGTTCACTGACGCACAGCGGTACTGGGGAGACTTGGAGTGGCAAGAGCACGCGC GATCAAATGGAACACAAGGTTGCCGAGCTGCAGGCTGCCTTGGAGAAGAAGAGTCTACGTGAAGGAGAGCTTGAA CTGGAGCTCGAGATGCTACGCGGAGGGAGCCATAGCACCCAAGGCAGCTCGGTGCTAGCTCACCACTCGTCTCAA CGGGACTCGCGCGACACAGTGGTTCCCATGGGAAGCAACTACTCGCGGTCTCCCGACACGACGCACAGGCGAACA AAGACGCTCGACACAATGCCCGAAAGCGACACTGTGTCGACGGCCACAGAATCTAGCACCTTGTGGTGTGAGATT TGCGAGACTGGTGGTCACGACATCCTGACTTGCACCAAGATGTTTGGCTCCGAGGACGCAAAGAGCGCCATTGAG ACTCCATCTGTCAAGGGCGTGGACAGACGTCAAGGTCTCAAGCCTCGTGTAGCCGGTGTCGCTCATCCTGCGCCT CTAGCTCCGGCCCGGGCAAAGACACCTGTGCCGACCAAGGCGCCTGCCATTAAGGTTCTTCCCAATCCCATGGAG TCTGGGCCCGTTGCCGGCAAAGAGAGTGGCATCATGGATCCTGAGAAGTGGTGTGCTGTGTGTGAACGTGATGGC CACGACAGCGTCGACTGTCCATTTGAGGAGGCCTTTTAG |