Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1687
Gene name
LocationContig_148:25978..26806
Strand+
Gene length (bp)828
Transcript length (bp)828
Coding sequence length (bp)828
Protein length (aa) 276

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13821 DUF4187 Domain of unknown function (DUF4187) 2.7E-18 224 274
PF01585 G-patch G-patch domain 4.3E-07 75 118

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6DGZ0|GPT11_DANRE G patch domain-containing protein 11 OS=Danio rerio GN=gpatch11 PE=2 SV=1 9 275 7.0E-22
sp|Q6DF57|GPT11_XENTR G patch domain-containing protein 11 OS=Xenopus tropicalis GN=gpatch11 PE=2 SV=1 9 275 5.0E-18
sp|Q3UFS4|GPT11_MOUSE G patch domain-containing protein 11 OS=Mus musculus GN=Gpatch11 PE=1 SV=2 8 275 4.0E-17
sp|Q8N954|GPT11_HUMAN G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3 8 275 1.0E-16
sp|Q2KI19|GPT11_BOVIN G patch domain-containing protein 11 OS=Bos taurus GN=GPATCH11 PE=2 SV=2 8 275 1.0E-16

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 68 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1687
MAGTRDNADDQDYMNMSFADSDAKPETSLQRTRRLKLEALERGMVKSKAQHEQEVEAARKKGLATSLLHGPGAQQ
SKGLAMMAKMGFTGGGLGKTADGTATREPITISIKDGRGGIGLDSDKKRQQVDDAAHQDSLRAKRARCDAHDYRQ
RIGREQQEARRQAQFQAAQRLAQRLDQDGGNPPEQPVPLLYRRLVRQDHEAQDYATHYPTDSFHDDVELDHDAEL
DAFDALSPSDRLSKALQYLRSKHYYCFWCKMAYPTHHLTGCPGVTEEHHD*
Coding >OphauB2|1687
ATGGCAGGCACGCGCGACAATGCAGACGACCAAGACTACATGAACATGTCGTTTGCCGACAGCGACGCCAAACCA
GAAACGTCGCTGCAACGCACCCGGCGGCTCAAGCTCGAGGCGCTCGAGCGCGGCATGGTCAAGTCCAAGGCACAG
CATGAGCAAGAAGTCGAGGCAGCGCGCAAAAAGGGCCTCGCGACCTCTCTTCTCCATGGGCCTGGGGCGCAACAG
AGCAAGGGCCTGGCCATGATGGCCAAGATGGGCTTTACGGGCGGCGGGCTCGGCAAGACGGCAGATGGCACAGCG
ACACGCGAACCCATAACCATCAGCATCAAGGACGGCCGCGGCGGCATTGGCCTCGACAGCGACAAGAAGCGGCAG
CAAGTCGACGATGCTGCACATCAAGACTCTCTGCGCGCCAAGAGGGCCAGATGCGACGCCCACGACTATCGCCAG
CGCATCGGCCGCGAGCAGCAAGAGGCGCGGCGCCAAGCACAGTTCCAGGCCGCCCAGAGACTGGCCCAGCGCCTC
GACCAAGATGGCGGCAATCCGCCCGAGCAGCCAGTCCCGCTCCTCTACCGCCGCCTCGTGCGCCAGGACCACGAG
GCCCAAGACTACGCCACACACTACCCGACAGACTCTTTCCACGACGATGTAGAGCTCGACCACGATGCAGAGCTC
GACGCCTTTGATGCACTGAGCCCTAGCGACCGCTTATCCAAAGCTCTGCAGTACCTTCGCAGCAAACACTACTAC
TGTTTCTGGTGCAAAATGGCCTATCCCACCCACCACCTCACCGGATGTCCTGGCGTTACAGAGGAGCATCATGAC
TGA
Transcript >OphauB2|1687
ATGGCAGGCACGCGCGACAATGCAGACGACCAAGACTACATGAACATGTCGTTTGCCGACAGCGACGCCAAACCA
GAAACGTCGCTGCAACGCACCCGGCGGCTCAAGCTCGAGGCGCTCGAGCGCGGCATGGTCAAGTCCAAGGCACAG
CATGAGCAAGAAGTCGAGGCAGCGCGCAAAAAGGGCCTCGCGACCTCTCTTCTCCATGGGCCTGGGGCGCAACAG
AGCAAGGGCCTGGCCATGATGGCCAAGATGGGCTTTACGGGCGGCGGGCTCGGCAAGACGGCAGATGGCACAGCG
ACACGCGAACCCATAACCATCAGCATCAAGGACGGCCGCGGCGGCATTGGCCTCGACAGCGACAAGAAGCGGCAG
CAAGTCGACGATGCTGCACATCAAGACTCTCTGCGCGCCAAGAGGGCCAGATGCGACGCCCACGACTATCGCCAG
CGCATCGGCCGCGAGCAGCAAGAGGCGCGGCGCCAAGCACAGTTCCAGGCCGCCCAGAGACTGGCCCAGCGCCTC
GACCAAGATGGCGGCAATCCGCCCGAGCAGCCAGTCCCGCTCCTCTACCGCCGCCTCGTGCGCCAGGACCACGAG
GCCCAAGACTACGCCACACACTACCCGACAGACTCTTTCCACGACGATGTAGAGCTCGACCACGATGCAGAGCTC
GACGCCTTTGATGCACTGAGCCCTAGCGACCGCTTATCCAAAGCTCTGCAGTACCTTCGCAGCAAACACTACTAC
TGTTTCTGGTGCAAAATGGCCTATCCCACCCACCACCTCACCGGATGTCCTGGCGTTACAGAGGAGCATCATGAC
TGA
Gene >OphauB2|1687
ATGGCAGGCACGCGCGACAATGCAGACGACCAAGACTACATGAACATGTCGTTTGCCGACAGCGACGCCAAACCA
GAAACGTCGCTGCAACGCACCCGGCGGCTCAAGCTCGAGGCGCTCGAGCGCGGCATGGTCAAGTCCAAGGCACAG
CATGAGCAAGAAGTCGAGGCAGCGCGCAAAAAGGGCCTCGCGACCTCTCTTCTCCATGGGCCTGGGGCGCAACAG
AGCAAGGGCCTGGCCATGATGGCCAAGATGGGCTTTACGGGCGGCGGGCTCGGCAAGACGGCAGATGGCACAGCG
ACACGCGAACCCATAACCATCAGCATCAAGGACGGCCGCGGCGGCATTGGCCTCGACAGCGACAAGAAGCGGCAG
CAAGTCGACGATGCTGCACATCAAGACTCTCTGCGCGCCAAGAGGGCCAGATGCGACGCCCACGACTATCGCCAG
CGCATCGGCCGCGAGCAGCAAGAGGCGCGGCGCCAAGCACAGTTCCAGGCCGCCCAGAGACTGGCCCAGCGCCTC
GACCAAGATGGCGGCAATCCGCCCGAGCAGCCAGTCCCGCTCCTCTACCGCCGCCTCGTGCGCCAGGACCACGAG
GCCCAAGACTACGCCACACACTACCCGACAGACTCTTTCCACGACGATGTAGAGCTCGACCACGATGCAGAGCTC
GACGCCTTTGATGCACTGAGCCCTAGCGACCGCTTATCCAAAGCTCTGCAGTACCTTCGCAGCAAACACTACTAC
TGTTTCTGGTGCAAAATGGCCTATCCCACCCACCACCTCACCGGATGTCCTGGCGTTACAGAGGAGCATCATGAC
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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