Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1668
Gene name
LocationContig_147:11795..14351
Strand-
Gene length (bp)2556
Transcript length (bp)2556
Coding sequence length (bp)2556
Protein length (aa) 852

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00924 MS_channel Mechanosensitive ion channel 1.6E-21 487 678

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 118 717 4.0E-123
sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 110 716 3.0E-72
sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 237 704 4.0E-27
sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 421 640 2.0E-25
sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 432 701 1.0E-19
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 118 717 4.0E-123
sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 110 716 3.0E-72
sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 237 704 4.0E-27
sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 421 640 2.0E-25
sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 432 701 1.0E-19
sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 432 701 4.0E-18
sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 278 701 1.0E-17
sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 468 727 2.0E-16
sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 242 701 2.0E-15
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GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

Domain # Start End Length
1 147 169 22
2 179 201 22
3 234 251 17
4 281 303 22
5 489 511 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1668
MAGSAHLQRDQPGETTQTVQGEAQPILGPQNDADDFDEKAHGSSSLQTFNTLDTVHDFHDLDQEFTSATGQQLDN
DGFELPRFRSHGSNREQAEVAFCTKSRNHNPEPEDTFNQRVEEEPVLKQRNENAALYKVWVFLKKFPRVVRYIFY
LLPGAALLLIPVLLGALRFSPNDKLVGGTGGVQLMWFGIWLEIVWCSLWISRLLTSLIPHICYSVARISGSVNAK
KWKDIGQRIEVHAALFLWLLAVLISFKPTNDGHRAPVPPGKEDEVSIGWIDVVNKVIIALFICATLNFVEKIIIQ
WIATSFHQRTYSTRILNNKADIKQITHLYFYAKNKLGEPPKGSFSGPAMGAQKPLQSLHNNARQVLGKVGYVANR
VGNDLIGRKVNPKTPKKTVAELLRNTASAQSLGGDLYKALVREDRDVVTPEDLRCAFESEEEADAAMMVFDKDLN
GDISLEEFQTVCNEVHLEKKAIAASLKDLDSVVEKLNKVFVFMIIIITVIIFISILSGSAAAGLASAGTAFLGLA
WVLQATAQEFLQSVIFVFIKHPFDVGDRVTIYGSTGADMTGDDYYVTEISLLYTEFKKLQGQIVQAPNSVLNTLF
ILNQRRSNGIADVVPLEIRFATPAHLIDELKERMTAFVKEYRRDYLSNILTEMTKIDEARSCTVNFVFMHKSNYQ
NEVVRLSRHNRFVTELMKNMHELGIQGPLRMEPGGSREYPLYWAGPPPPPLPGKESPHHEQQYHQADEPSRMQRV
PSNLVPKHSGSVRSQRLPTTSEEGVMDFQDVYESRRDHVMAQRMTSIREKERGLQEEAKAEAAASSTALALTRSH
ESHSLSRHRLFGRARSGTRSQQDDAV*
Coding >OphauB2|1668
ATGGCTGGTTCAGCACACTTGCAGCGAGACCAGCCGGGTGAGACTACGCAGACAGTCCAAGGAGAAGCGCAGCCG
ATTTTAGGCCCGCAAAATGACGCCGACGACTTTGACGAAAAGGCCCACGGGTCATCGTCGCTCCAGACCTTTAAT
ACTCTAGACACAGTCCATGACTTTCACGACCTGGACCAGGAGTTCACGTCGGCTACCGGACAGCAGCTGGACAAT
GATGGCTTCGAGCTGCCCCGATTCAGGAGTCATGGCTCCAATCGGGAACAGGCAGAGGTGGCTTTTTGTACTAAG
AGTCGGAACCACAATCCTGAGCCCGAAGATACCTTTAACCAGCGCGTTGAAGAAGAGCCCGTACTGAAGCAAAGA
AACGAAAACGCTGCTCTCTACAAGGTCTGGGTCTTTCTCAAGAAATTCCCCCGCGTCGTTCGCTACATCTTCTAT
CTTTTGCCCGGTGCCGCCCTTCTTTTGATTCCCGTGCTGCTCGGCGCTCTGCGCTTCAGTCCCAACGATAAGCTC
GTTGGCGGAACCGGTGGCGTCCAGCTTATGTGGTTTGGCATCTGGCTCGAGATTGTCTGGTGCAGCCTTTGGATC
TCGCGCCTCCTAACCAGTCTCATACCTCACATTTGTTACAGCGTTGCCCGAATCAGTGGCTCCGTGAACGCTAAG
AAATGGAAGGATATTGGCCAACGTATCGAGGTACACGCCGCCCTTTTTCTCTGGCTTCTTGCCGTTCTCATCTCC
TTTAAGCCTACCAATGACGGTCACCGCGCCCCAGTACCCCCAGGCAAGGAAGACGAGGTCAGCATTGGCTGGATC
GACGTGGTCAACAAGGTCATTATTGCCCTCTTTATCTGCGCCACTCTCAACTTTGTCGAGAAGATAATCATTCAG
TGGATTGCCACCTCTTTCCACCAGCGCACCTACTCAACCAGGATCTTGAACAACAAGGCCGACATTAAGCAAATC
ACACATTTATACTTTTATGCCAAGAACAAGCTTGGCGAGCCACCCAAGGGAAGCTTTTCGGGCCCAGCAATGGGT
GCTCAGAAGCCCTTGCAATCGCTTCACAACAATGCTCGCCAGGTTCTCGGCAAAGTCGGCTACGTTGCCAATCGA
GTTGGCAATGATCTTATTGGTCGCAAGGTCAACCCTAAAACCCCTAAGAAGACTGTCGCTGAGCTCCTTCGCAAC
ACAGCATCGGCCCAGAGCCTGGGAGGGGATCTCTACAAAGCTTTGGTCAGGGAAGACAGGGACGTTGTCACTCCA
GAAGATCTTCGATGTGCATTTGAATCAGAAGAAGAAGCAGATGCTGCTATGATGGTCTTCGACAAGGATCTTAAT
GGCGATATTTCTTTGGAGGAGTTTCAGACCGTCTGCAACGAAGTTCATCTCGAGAAGAAGGCCATTGCAGCTTCG
CTCAAAGACCTCGACTCGGTTGTTGAGAAGCTCAACAAGGTCTTTGTGTTTATGATTATCATCATTACAGTCATT
ATCTTTATATCCATTCTCTCGGGATCTGCCGCCGCTGGACTTGCCTCGGCTGGCACTGCTTTTCTTGGGCTCGCC
TGGGTACTTCAGGCCACGGCTCAAGAGTTTCTGCAGTCGGTCATTTTCGTCTTCATCAAGCACCCCTTTGATGTG
GGCGACCGAGTCACTATATACGGCTCAACTGGAGCCGACATGACGGGTGACGACTATTATGTGACGGAAATTTCA
CTCCTCTACACCGAGTTCAAGAAACTGCAAGGGCAGATTGTTCAAGCACCGAATTCTGTGCTCAACACGCTTTTT
ATCTTGAATCAGCGCCGGTCCAACGGTATTGCCGATGTGGTGCCCCTGGAGATTAGATTTGCCACACCGGCTCAT
CTGATTGACGAGCTAAAAGAGCGCATGACGGCCTTTGTCAAGGAGTATAGGCGCGACTACTTGTCTAATATCCTT
ACCGAAATGACCAAGATTGATGAAGCTCGGTCGTGCACCGTGAACTTTGTCTTTATGCACAAGTCCAACTATCAA
AACGAGGTGGTTCGACTCTCGAGGCACAACCGATTCGTCACGGAACTCATGAAGAATATGCATGAACTCGGAATC
CAAGGTCCTTTGCGCATGGAGCCCGGTGGCAGCCGCGAGTATCCCTTGTACTGGGCCGGACCGCCTCCTCCGCCT
CTGCCGGGCAAGGAGAGTCCTCACCATGAGCAGCAGTACCACCAGGCCGACGAGCCCAGCAGGATGCAAAGAGTG
CCATCCAACTTGGTGCCCAAGCACAGCGGAAGCGTTCGCAGCCAGCGTCTGCCTACTACGAGTGAGGAAGGCGTC
ATGGACTTTCAAGACGTCTATGAAAGTCGAAGAGACCATGTCATGGCGCAGCGCATGACATCTATCAGAGAAAAG
GAGCGCGGCCTTCAAGAAGAGGCCAAGGCAGAAGCTGCTGCCTCTTCGACAGCTCTGGCACTGACACGTTCGCAC
GAATCGCATTCGCTTTCACGCCATCGACTCTTTGGACGTGCTCGCAGCGGGACTAGGAGTCAGCAAGACGATGCA
GTCTAA
Transcript >OphauB2|1668
ATGGCTGGTTCAGCACACTTGCAGCGAGACCAGCCGGGTGAGACTACGCAGACAGTCCAAGGAGAAGCGCAGCCG
ATTTTAGGCCCGCAAAATGACGCCGACGACTTTGACGAAAAGGCCCACGGGTCATCGTCGCTCCAGACCTTTAAT
ACTCTAGACACAGTCCATGACTTTCACGACCTGGACCAGGAGTTCACGTCGGCTACCGGACAGCAGCTGGACAAT
GATGGCTTCGAGCTGCCCCGATTCAGGAGTCATGGCTCCAATCGGGAACAGGCAGAGGTGGCTTTTTGTACTAAG
AGTCGGAACCACAATCCTGAGCCCGAAGATACCTTTAACCAGCGCGTTGAAGAAGAGCCCGTACTGAAGCAAAGA
AACGAAAACGCTGCTCTCTACAAGGTCTGGGTCTTTCTCAAGAAATTCCCCCGCGTCGTTCGCTACATCTTCTAT
CTTTTGCCCGGTGCCGCCCTTCTTTTGATTCCCGTGCTGCTCGGCGCTCTGCGCTTCAGTCCCAACGATAAGCTC
GTTGGCGGAACCGGTGGCGTCCAGCTTATGTGGTTTGGCATCTGGCTCGAGATTGTCTGGTGCAGCCTTTGGATC
TCGCGCCTCCTAACCAGTCTCATACCTCACATTTGTTACAGCGTTGCCCGAATCAGTGGCTCCGTGAACGCTAAG
AAATGGAAGGATATTGGCCAACGTATCGAGGTACACGCCGCCCTTTTTCTCTGGCTTCTTGCCGTTCTCATCTCC
TTTAAGCCTACCAATGACGGTCACCGCGCCCCAGTACCCCCAGGCAAGGAAGACGAGGTCAGCATTGGCTGGATC
GACGTGGTCAACAAGGTCATTATTGCCCTCTTTATCTGCGCCACTCTCAACTTTGTCGAGAAGATAATCATTCAG
TGGATTGCCACCTCTTTCCACCAGCGCACCTACTCAACCAGGATCTTGAACAACAAGGCCGACATTAAGCAAATC
ACACATTTATACTTTTATGCCAAGAACAAGCTTGGCGAGCCACCCAAGGGAAGCTTTTCGGGCCCAGCAATGGGT
GCTCAGAAGCCCTTGCAATCGCTTCACAACAATGCTCGCCAGGTTCTCGGCAAAGTCGGCTACGTTGCCAATCGA
GTTGGCAATGATCTTATTGGTCGCAAGGTCAACCCTAAAACCCCTAAGAAGACTGTCGCTGAGCTCCTTCGCAAC
ACAGCATCGGCCCAGAGCCTGGGAGGGGATCTCTACAAAGCTTTGGTCAGGGAAGACAGGGACGTTGTCACTCCA
GAAGATCTTCGATGTGCATTTGAATCAGAAGAAGAAGCAGATGCTGCTATGATGGTCTTCGACAAGGATCTTAAT
GGCGATATTTCTTTGGAGGAGTTTCAGACCGTCTGCAACGAAGTTCATCTCGAGAAGAAGGCCATTGCAGCTTCG
CTCAAAGACCTCGACTCGGTTGTTGAGAAGCTCAACAAGGTCTTTGTGTTTATGATTATCATCATTACAGTCATT
ATCTTTATATCCATTCTCTCGGGATCTGCCGCCGCTGGACTTGCCTCGGCTGGCACTGCTTTTCTTGGGCTCGCC
TGGGTACTTCAGGCCACGGCTCAAGAGTTTCTGCAGTCGGTCATTTTCGTCTTCATCAAGCACCCCTTTGATGTG
GGCGACCGAGTCACTATATACGGCTCAACTGGAGCCGACATGACGGGTGACGACTATTATGTGACGGAAATTTCA
CTCCTCTACACCGAGTTCAAGAAACTGCAAGGGCAGATTGTTCAAGCACCGAATTCTGTGCTCAACACGCTTTTT
ATCTTGAATCAGCGCCGGTCCAACGGTATTGCCGATGTGGTGCCCCTGGAGATTAGATTTGCCACACCGGCTCAT
CTGATTGACGAGCTAAAAGAGCGCATGACGGCCTTTGTCAAGGAGTATAGGCGCGACTACTTGTCTAATATCCTT
ACCGAAATGACCAAGATTGATGAAGCTCGGTCGTGCACCGTGAACTTTGTCTTTATGCACAAGTCCAACTATCAA
AACGAGGTGGTTCGACTCTCGAGGCACAACCGATTCGTCACGGAACTCATGAAGAATATGCATGAACTCGGAATC
CAAGGTCCTTTGCGCATGGAGCCCGGTGGCAGCCGCGAGTATCCCTTGTACTGGGCCGGACCGCCTCCTCCGCCT
CTGCCGGGCAAGGAGAGTCCTCACCATGAGCAGCAGTACCACCAGGCCGACGAGCCCAGCAGGATGCAAAGAGTG
CCATCCAACTTGGTGCCCAAGCACAGCGGAAGCGTTCGCAGCCAGCGTCTGCCTACTACGAGTGAGGAAGGCGTC
ATGGACTTTCAAGACGTCTATGAAAGTCGAAGAGACCATGTCATGGCGCAGCGCATGACATCTATCAGAGAAAAG
GAGCGCGGCCTTCAAGAAGAGGCCAAGGCAGAAGCTGCTGCCTCTTCGACAGCTCTGGCACTGACACGTTCGCAC
GAATCGCATTCGCTTTCACGCCATCGACTCTTTGGACGTGCTCGCAGCGGGACTAGGAGTCAGCAAGACGATGCA
GTCTAA
Gene >OphauB2|1668
ATGGCTGGTTCAGCACACTTGCAGCGAGACCAGCCGGGTGAGACTACGCAGACAGTCCAAGGAGAAGCGCAGCCG
ATTTTAGGCCCGCAAAATGACGCCGACGACTTTGACGAAAAGGCCCACGGGTCATCGTCGCTCCAGACCTTTAAT
ACTCTAGACACAGTCCATGACTTTCACGACCTGGACCAGGAGTTCACGTCGGCTACCGGACAGCAGCTGGACAAT
GATGGCTTCGAGCTGCCCCGATTCAGGAGTCATGGCTCCAATCGGGAACAGGCAGAGGTGGCTTTTTGTACTAAG
AGTCGGAACCACAATCCTGAGCCCGAAGATACCTTTAACCAGCGCGTTGAAGAAGAGCCCGTACTGAAGCAAAGA
AACGAAAACGCTGCTCTCTACAAGGTCTGGGTCTTTCTCAAGAAATTCCCCCGCGTCGTTCGCTACATCTTCTAT
CTTTTGCCCGGTGCCGCCCTTCTTTTGATTCCCGTGCTGCTCGGCGCTCTGCGCTTCAGTCCCAACGATAAGCTC
GTTGGCGGAACCGGTGGCGTCCAGCTTATGTGGTTTGGCATCTGGCTCGAGATTGTCTGGTGCAGCCTTTGGATC
TCGCGCCTCCTAACCAGTCTCATACCTCACATTTGTTACAGCGTTGCCCGAATCAGTGGCTCCGTGAACGCTAAG
AAATGGAAGGATATTGGCCAACGTATCGAGGTACACGCCGCCCTTTTTCTCTGGCTTCTTGCCGTTCTCATCTCC
TTTAAGCCTACCAATGACGGTCACCGCGCCCCAGTACCCCCAGGCAAGGAAGACGAGGTCAGCATTGGCTGGATC
GACGTGGTCAACAAGGTCATTATTGCCCTCTTTATCTGCGCCACTCTCAACTTTGTCGAGAAGATAATCATTCAG
TGGATTGCCACCTCTTTCCACCAGCGCACCTACTCAACCAGGATCTTGAACAACAAGGCCGACATTAAGCAAATC
ACACATTTATACTTTTATGCCAAGAACAAGCTTGGCGAGCCACCCAAGGGAAGCTTTTCGGGCCCAGCAATGGGT
GCTCAGAAGCCCTTGCAATCGCTTCACAACAATGCTCGCCAGGTTCTCGGCAAAGTCGGCTACGTTGCCAATCGA
GTTGGCAATGATCTTATTGGTCGCAAGGTCAACCCTAAAACCCCTAAGAAGACTGTCGCTGAGCTCCTTCGCAAC
ACAGCATCGGCCCAGAGCCTGGGAGGGGATCTCTACAAAGCTTTGGTCAGGGAAGACAGGGACGTTGTCACTCCA
GAAGATCTTCGATGTGCATTTGAATCAGAAGAAGAAGCAGATGCTGCTATGATGGTCTTCGACAAGGATCTTAAT
GGCGATATTTCTTTGGAGGAGTTTCAGACCGTCTGCAACGAAGTTCATCTCGAGAAGAAGGCCATTGCAGCTTCG
CTCAAAGACCTCGACTCGGTTGTTGAGAAGCTCAACAAGGTCTTTGTGTTTATGATTATCATCATTACAGTCATT
ATCTTTATATCCATTCTCTCGGGATCTGCCGCCGCTGGACTTGCCTCGGCTGGCACTGCTTTTCTTGGGCTCGCC
TGGGTACTTCAGGCCACGGCTCAAGAGTTTCTGCAGTCGGTCATTTTCGTCTTCATCAAGCACCCCTTTGATGTG
GGCGACCGAGTCACTATATACGGCTCAACTGGAGCCGACATGACGGGTGACGACTATTATGTGACGGAAATTTCA
CTCCTCTACACCGAGTTCAAGAAACTGCAAGGGCAGATTGTTCAAGCACCGAATTCTGTGCTCAACACGCTTTTT
ATCTTGAATCAGCGCCGGTCCAACGGTATTGCCGATGTGGTGCCCCTGGAGATTAGATTTGCCACACCGGCTCAT
CTGATTGACGAGCTAAAAGAGCGCATGACGGCCTTTGTCAAGGAGTATAGGCGCGACTACTTGTCTAATATCCTT
ACCGAAATGACCAAGATTGATGAAGCTCGGTCGTGCACCGTGAACTTTGTCTTTATGCACAAGTCCAACTATCAA
AACGAGGTGGTTCGACTCTCGAGGCACAACCGATTCGTCACGGAACTCATGAAGAATATGCATGAACTCGGAATC
CAAGGTCCTTTGCGCATGGAGCCCGGTGGCAGCCGCGAGTATCCCTTGTACTGGGCCGGACCGCCTCCTCCGCCT
CTGCCGGGCAAGGAGAGTCCTCACCATGAGCAGCAGTACCACCAGGCCGACGAGCCCAGCAGGATGCAAAGAGTG
CCATCCAACTTGGTGCCCAAGCACAGCGGAAGCGTTCGCAGCCAGCGTCTGCCTACTACGAGTGAGGAAGGCGTC
ATGGACTTTCAAGACGTCTATGAAAGTCGAAGAGACCATGTCATGGCGCAGCGCATGACATCTATCAGAGAAAAG
GAGCGCGGCCTTCAAGAAGAGGCCAAGGCAGAAGCTGCTGCCTCTTCGACAGCTCTGGCACTGACACGTTCGCAC
GAATCGCATTCGCTTTCACGCCATCGACTCTTTGGACGTGCTCGCAGCGGGACTAGGAGTCAGCAAGACGATGCA
GTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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