© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1628 |
| Gene name | |
| Location | Contig_145:5010..6716 |
| Strand | + |
| Gene length (bp) | 1706 |
| Transcript length (bp) | 1377 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04142 | Nuc_sug_transp | Nucleotide-sugar transporter | 2.3E-96 | 23 | 387 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87041|GMS1_SCHPO | UDP-galactose transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gms1 PE=2 SV=3 | 21 | 390 | 2.0E-83 |
| sp|Q6AXR5|S35A3_RAT | UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3 PE=2 SV=1 | 21 | 396 | 1.0E-67 |
| sp|O77592|S35A3_CANLF | UDP-N-acetylglucosamine transporter OS=Canis lupus familiaris GN=SLC35A3 PE=2 SV=1 | 21 | 396 | 8.0E-67 |
| sp|Q6YC49|S35A3_BOVIN | UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2 SV=1 | 21 | 396 | 8.0E-66 |
| sp|Q8R1T4|S35A3_MOUSE | UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2 SV=1 | 21 | 396 | 1.0E-65 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87041|GMS1_SCHPO | UDP-galactose transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gms1 PE=2 SV=3 | 21 | 390 | 2.0E-83 |
| sp|Q6AXR5|S35A3_RAT | UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3 PE=2 SV=1 | 21 | 396 | 1.0E-67 |
| sp|O77592|S35A3_CANLF | UDP-N-acetylglucosamine transporter OS=Canis lupus familiaris GN=SLC35A3 PE=2 SV=1 | 21 | 396 | 8.0E-67 |
| sp|Q6YC49|S35A3_BOVIN | UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2 SV=1 | 21 | 396 | 8.0E-66 |
| sp|Q8R1T4|S35A3_MOUSE | UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2 SV=1 | 21 | 396 | 1.0E-65 |
| sp|Q9Y2D2|S35A3_HUMAN | UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35A3 PE=1 SV=1 | 21 | 396 | 4.0E-65 |
| sp|Q9R0M8|S35A2_MOUSE | UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=1 SV=1 | 21 | 410 | 2.0E-57 |
| sp|P78382|S35A1_HUMAN | CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1 | 24 | 391 | 2.0E-47 |
| sp|Q61420|S35A1_MOUSE | CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2 | 24 | 391 | 4.0E-46 |
| sp|O08520|S35A1_CRIGR | CMP-sialic acid transporter OS=Cricetulus griseus GN=SLC35A1 PE=2 SV=1 | 24 | 391 | 5.0E-45 |
| sp|Q02334|UGTP1_CAEEL | UDP-galactose translocator 1 OS=Caenorhabditis elegans GN=ugtp-1 PE=3 SV=2 | 27 | 387 | 4.0E-39 |
| sp|Q58DA6|S35A2_BOVIN | UDP-galactose translocator OS=Bos taurus GN=SLC35A2 PE=2 SV=1 | 237 | 390 | 3.0E-33 |
| sp|Q8WMS0|S35A2_CANLF | UDP-galactose translocator OS=Canis lupus familiaris GN=SLC35A2 PE=2 SV=2 | 237 | 390 | 1.0E-32 |
| sp|P78381|S35A2_HUMAN | UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=1 SV=1 | 237 | 390 | 2.0E-32 |
| sp|Q93890|SRF3_CAEEL | UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5 | 8 | 386 | 7.0E-32 |
| sp|F4JN00|CSTR4_ARATH | CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1 | 48 | 386 | 1.0E-27 |
| sp|Q921R7|S35A5_MOUSE | Probable UDP-sugar transporter protein SLC35A5 OS=Mus musculus GN=Slc35a5 PE=1 SV=3 | 32 | 411 | 4.0E-25 |
| sp|Q6DCG9|S35A5_XENLA | Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1 | 108 | 387 | 3.0E-24 |
| sp|Q5R4D7|S35A5_PONAB | Probable UDP-sugar transporter protein SLC35A5 OS=Pongo abelii GN=SLC35A5 PE=2 SV=1 | 33 | 419 | 4.0E-23 |
| sp|Q654D9|CSTR1_ORYSJ | CMP-sialic acid transporter 1 OS=Oryza sativa subsp. japonica GN=CSTLP1 PE=2 SV=1 | 49 | 389 | 2.0E-21 |
| sp|P78381|S35A2_HUMAN | UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=1 SV=1 | 21 | 174 | 2.0E-21 |
| sp|Q9BS91|S35A5_HUMAN | Probable UDP-sugar transporter protein SLC35A5 OS=Homo sapiens GN=SLC35A5 PE=1 SV=2 | 110 | 419 | 3.0E-21 |
| sp|B8B350|CSTR1_ORYSI | CMP-sialic acid transporter 1 OS=Oryza sativa subsp. indica GN=CSTLP1 PE=3 SV=1 | 49 | 389 | 3.0E-21 |
| sp|Q58DA6|S35A2_BOVIN | UDP-galactose translocator OS=Bos taurus GN=SLC35A2 PE=2 SV=1 | 21 | 174 | 4.0E-21 |
| sp|Q8WMS0|S35A2_CANLF | UDP-galactose translocator OS=Canis lupus familiaris GN=SLC35A2 PE=2 SV=2 | 21 | 174 | 1.0E-20 |
| sp|Q6ZL17|CSTR2_ORYSJ | CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica GN=CSTLP2 PE=2 SV=1 | 235 | 390 | 3.0E-20 |
| sp|B8B7Q4|CSTR2_ORYSI | CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica GN=CSTLP2 PE=3 SV=1 | 235 | 390 | 4.0E-20 |
| sp|Q90X48|S35A5_DANRE | Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1 | 36 | 436 | 5.0E-20 |
| sp|A6QPI1|S35A5_BOVIN | Probable UDP-sugar transporter protein SLC35A5 OS=Bos taurus GN=SLC35A5 PE=2 SV=1 | 25 | 417 | 6.0E-19 |
| sp|Q8LGE9|CSTR1_ARATH | CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1 | 49 | 389 | 6.0E-18 |
| sp|A4IHW3|S35A4_XENTR | Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1 | 49 | 386 | 2.0E-14 |
| sp|B8A7Q8|CSTR3_ORYSI | CMP-sialic acid transporter 3 OS=Oryza sativa subsp. indica GN=CSTLP3 PE=3 SV=1 | 49 | 401 | 3.0E-13 |
| sp|Q5N855|CSTR3_ORYSJ | CMP-sialic acid transporter 3 OS=Oryza sativa subsp. japonica GN=CSTLP3 PE=2 SV=1 | 49 | 401 | 3.0E-13 |
| sp|A0JMG9|S35A4_DANRE | Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1 | 108 | 386 | 4.0E-13 |
| sp|B8B7Q4|CSTR2_ORYSI | CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica GN=CSTLP2 PE=3 SV=1 | 13 | 180 | 3.0E-08 |
| sp|Q6ZL17|CSTR2_ORYSJ | CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica GN=CSTLP2 PE=2 SV=1 | 13 | 180 | 4.0E-08 |
| sp|Q91ZR7|S35A4_RAT | Probable UDP-sugar transporter protein SLC35A4 OS=Rattus norvegicus GN=Slc35a4 PE=2 SV=2 | 256 | 386 | 1.0E-06 |
| sp|Q8GY97|CSTR2_ARATH | CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1 | 60 | 183 | 6.0E-06 |
| sp|Q9D321|S35A4_MOUSE | Probable UDP-sugar transporter protein SLC35A4 OS=Mus musculus GN=Slc35a4 PE=2 SV=1 | 256 | 386 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0090481 | pyrimidine nucleotide-sugar transmembrane transport | Yes |
| GO:0000139 | Golgi membrane | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0098588 | bounding membrane of organelle | No |
| GO:0008150 | biological_process | No |
| GO:0016020 | membrane | No |
| GO:0071702 | organic substance transport | No |
| GO:0003674 | molecular_function | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| GO:0005338 | nucleotide-sugar transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:1901505 | carbohydrate derivative transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0015932 | nucleobase-containing compound transmembrane transporter activity | No |
| GO:1901264 | carbohydrate derivative transport | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0015780 | nucleotide-sugar transmembrane transport | No |
| GO:0031090 | organelle membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 98 | 120 | 22 |
| 2 | 130 | 152 | 22 |
| 3 | 161 | 183 | 22 |
| 4 | 243 | 265 | 22 |
| 5 | 278 | 300 | 22 |
| 6 | 315 | 337 | 22 |
| 7 | 342 | 364 | 22 |
| 8 | 369 | 388 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1628 MTILETAVPRAVAGRGHGTGRDLSLITLTFQNSALILIMHYSRIMPPAGDHRYFTSTAVFLNEVIKLAVSLTLVI YETSQTLAPSTPATVLFEQIYNAVFSADAWLLAFPAAFYTLQNLLQYVAVENLDPVHFQVLYQVKILTTAIFSVI LLRRHLGLQRWVSLVVLTLGVSIVSLPSSETSVDSLLLHGVPNHYFARSKHELGQVGAAVGDLSSPEFHLSRRSA TYQGIANDLPPPDPVMNYSVGATAAVVSAVVSGLAGVYFEKVLKEGPAAQTSVWIRNIQLSLYSLVTAGLGGILW QDGSGIREHGFFEGYNAIVWTAVLLQAAGGLIASLVIRDADNIVKNFATSISIIISFIVSVWVFEFSVTLTFLLG TSLVLLATYLYGVPERSRHRPPAVRIVSFEKPAIERLATPRTTDVARLNADPFESATAAVTSSRPSSPMLPRQAS RTHVLRDD* |
| Coding | >OphauB2|1628 ATGACGATTCTCGAGACTGCCGTCCCCAGGGCCGTTGCTGGCAGGGGCCACGGCACGGGACGCGACCTGTCGCTC ATTACGCTGACGTTTCAAAACTCGGCCCTCATCTTGATTATGCACTACTCGCGCATCATGCCGCCTGCAGGCGAC CACCGCTACTTTACCTCGACGGCTGTCTTTCTCAACGAGGTGATTAAGCTGGCCGTCTCCCTCACCTTGGTTATA TACGAGACGTCGCAGACGCTTGCGCCTAGTACCCCTGCCACTGTTCTCTTTGAACAAATCTACAATGCAGTCTTT TCCGCCGATGCCTGGCTGCTGGCTTTTCCCGCCGCCTTTTATACGCTGCAGAACCTGCTGCAGTACGTGGCTGTT GAGAATCTCGACCCGGTCCACTTCCAGGTGCTCTACCAGGTCAAGATCCTCACCACTGCTATATTTAGCGTCATT TTGCTTCGGCGCCACCTTGGCCTTCAGCGCTGGGTCTCGCTAGTAGTCCTGACTCTTGGCGTCTCCATTGTCTCT CTGCCTTCATCAGAGACGAGCGTCGACTCGCTGCTCCTCCATGGCGTCCCCAACCACTACTTTGCGCGCTCCAAG CACGAGCTTGGCCAGGTTGGCGCTGCCGTTGGCGACTTGTCCTCCCCCGAGTTTCATCTTTCGCGCCGCTCCGCC ACGTACCAAGGCATCGCCAATGACTTGCCGCCCCCCGATCCCGTAATGAACTACTCGGTTGGCGCCACTGCGGCC GTGGTCTCGGCCGTGGTCTCGGGCCTTGCTGGCGTCTACTTTGAAAAGGTGCTCAAGGAGGGCCCAGCCGCGCAG ACGAGCGTGTGGATTCGCAATATCCAGCTCAGCCTCTACTCGCTCGTTACTGCTGGCCTGGGTGGCATCCTCTGG CAAGACGGAAGCGGCATCCGCGAGCACGGCTTCTTTGAGGGCTACAATGCCATTGTGTGGACGGCTGTGCTGTTG CAGGCGGCGGGCGGGCTAATTGCTAGCCTCGTGATTCGCGACGCGGATAATATTGTCAAGAATTTTGCGACGAGC ATCAGCATTATCATTAGCTTTATTGTGAGCGTGTGGGTGTTTGAGTTTTCAGTGACATTAACGTTCTTGCTGGGC ACCTCGCTCGTCTTGCTGGCCACCTATCTCTATGGCGTGCCCGAGCGCAGCCGCCACCGCCCACCAGCGGTGCGC ATCGTCAGCTTTGAGAAGCCAGCCATTGAGCGCCTCGCCACGCCGCGCACCACTGACGTGGCGCGCCTCAATGCC GATCCCTTTGAGTCCGCCACTGCCGCCGTGACTTCGAGTCGGCCTAGTAGTCCTATGCTGCCTCGACAGGCTAGT CGCACGCATGTATTGCGGGATGATTAG |
| Transcript | >OphauB2|1628 ATGACGATTCTCGAGACTGCCGTCCCCAGGGCCGTTGCTGGCAGGGGCCACGGCACGGGACGCGACCTGTCGCTC ATTACGCTGACGTTTCAAAACTCGGCCCTCATCTTGATTATGCACTACTCGCGCATCATGCCGCCTGCAGGCGAC CACCGCTACTTTACCTCGACGGCTGTCTTTCTCAACGAGGTGATTAAGCTGGCCGTCTCCCTCACCTTGGTTATA TACGAGACGTCGCAGACGCTTGCGCCTAGTACCCCTGCCACTGTTCTCTTTGAACAAATCTACAATGCAGTCTTT TCCGCCGATGCCTGGCTGCTGGCTTTTCCCGCCGCCTTTTATACGCTGCAGAACCTGCTGCAGTACGTGGCTGTT GAGAATCTCGACCCGGTCCACTTCCAGGTGCTCTACCAGGTCAAGATCCTCACCACTGCTATATTTAGCGTCATT TTGCTTCGGCGCCACCTTGGCCTTCAGCGCTGGGTCTCGCTAGTAGTCCTGACTCTTGGCGTCTCCATTGTCTCT CTGCCTTCATCAGAGACGAGCGTCGACTCGCTGCTCCTCCATGGCGTCCCCAACCACTACTTTGCGCGCTCCAAG CACGAGCTTGGCCAGGTTGGCGCTGCCGTTGGCGACTTGTCCTCCCCCGAGTTTCATCTTTCGCGCCGCTCCGCC ACGTACCAAGGCATCGCCAATGACTTGCCGCCCCCCGATCCCGTAATGAACTACTCGGTTGGCGCCACTGCGGCC GTGGTCTCGGCCGTGGTCTCGGGCCTTGCTGGCGTCTACTTTGAAAAGGTGCTCAAGGAGGGCCCAGCCGCGCAG ACGAGCGTGTGGATTCGCAATATCCAGCTCAGCCTCTACTCGCTCGTTACTGCTGGCCTGGGTGGCATCCTCTGG CAAGACGGAAGCGGCATCCGCGAGCACGGCTTCTTTGAGGGCTACAATGCCATTGTGTGGACGGCTGTGCTGTTG CAGGCGGCGGGCGGGCTAATTGCTAGCCTCGTGATTCGCGACGCGGATAATATTGTCAAGAATTTTGCGACGAGC ATCAGCATTATCATTAGCTTTATTGTGAGCGTGTGGGTGTTTGAGTTTTCAGTGACATTAACGTTCTTGCTGGGC ACCTCGCTCGTCTTGCTGGCCACCTATCTCTATGGCGTGCCCGAGCGCAGCCGCCACCGCCCACCAGCGGTGCGC ATCGTCAGCTTTGAGAAGCCAGCCATTGAGCGCCTCGCCACGCCGCGCACCACTGACGTGGCGCGCCTCAATGCC GATCCCTTTGAGTCCGCCACTGCCGCCGTGACTTCGAGTCGGCCTAGTAGTCCTATGCTGCCTCGACAGGCTAGT CGCACGCATGTATTGCGGGATGATTAG |
| Gene | >OphauB2|1628 ATGACGATTCTCGAGACTGCCGTCCCCAGGGCCGTTGCTGGCAGGGGCCACGGCACGGGACGCGACCTGTCGCTC ATTACGGTACAGCCCCCCCTCCCTTTGTTCAGCAGCAGAGACGAGGACCCAATGGCTTGGATTTGCTGACGCTCA AAATGGTAGCTGACGTTTCAAAACTCGGCCCTCATCTTGGTATGTCGTTGGGCACCCATATCGCGGCCGAAGCAA CATGGTTGGCCTGCTAACCCGTTGTGCCCGCAGATTATGCACTACTCGCGCATCATGCCGCCTGCAGGCGACCAC CGCTACTTTACCTCGACGGCTGTCTTTCTCAACGAGGTGATTAAGCTGGCCGTCTCCCTCACCTTGGTTATATAC GAGACGTCGCAGACGCTTGCGCCTAGTACCCCTGCCACTGTTCTCTTTGAACAAATCTACAATGCAGTCTTTTCC GCCGATGCCTGGCTGCTGGCTTTTCCCGCCGCCTTTTATACGCTGCAGAACCTGCTGCAGTACGTGGCTGTTGAG AATCTCGACCCGGTCCACTTCCAGGTGCTCTACCAGGTCAAGGTGCGTCGTCAGCTGCTGGTGCGAGCTACGACG GGACTGATGCTCATGTTCTTTGCCTCTAGATCCTCACCACTGCTATATTTAGCGTCATTTTGCTTCGGCGCCACC TTGGCCTTCAGCGCTGGGTCTCGCTAGTAGTCCTGACTCTTGGCGTCTCCATTGTCTCTCTGCCTTCATCAGAGA CGAGCGTCGACTCGCTGCTCCTCCATGGCGTCCCCAACCACTACTTTGCGCGCTCCAAGCACGAGCTTGGCCAGG TTGGCGCTGCCGTTGGCGACTTGTCCTCCCCCGAGTTTCATCTTTCGCGCCGCTCCGCCACGTACCAAGGCATCG CCAATGACTTGCCGCCCCCCGATCCCGTAATGAACTACTCGGTTGGCGCCACTGCGGCCGTGGTCTCGGCCGTGG TCTCGGGCCTTGCTGGCGTCTACTTTGAAAAGGTGCTCAAGGAGGGCCCAGCCGCGCAGACGAGCGTGTGGATTC GCAATATCCAGCTCAGCCTCTACTCGCTCGTTACTGCTGGCCTGGGTGGCATCCTCTGGCAAGACGGAAGCGGCA TCCGCGAGCACGGCTTCTTTGAGGGCTACAATGCCATTGTGTGGACGGCTGTGCTGTTGCAGGCGGCGGGCGGGC TAATTGCTAGCCTCGTGATTCGCGACGCGGATAATATTGTCAAGAATTTTGCGACGAGCATCAGCATTATCATTA GCTTTATTGTGAGCGTGTGGGTGTTTGAGTTTTCAGTGACATTAACGGTGAGTGTTTTTTTATTCCTCGCTTGCT TTTGTTTCTTGCTTGCCTCTACTTTTGGCTTAAAACTCCTTGATTTCTTTACACCCATGCTATACGCTGGCTAAC TTGGCATGGCCAACAAGTTCTTGCTGGGCACCTCGCTCGTCTTGCTGGCCACCTATCTCTATGGCGTGCCCGAGC GCAGCCGCCACCGCCCACCAGCGGTGCGCATCGTCAGCTTTGAGAAGCCAGCCATTGAGCGCCTCGCCACGCCGC GCACCACTGACGTGGCGCGCCTCAATGCCGATCCCTTTGAGTCCGCCACTGCCGCCGTGACTTCGAGTCGGCCTA GTAGTCCTATGCTGCCTCGACAGGCTAGTCGCACGCATGTATTGCGGGATGATTAG |