© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1570 |
| Gene name | |
| Location | Contig_142:8650..10225 |
| Strand | + |
| Gene length (bp) | 1575 |
| Transcript length (bp) | 1470 |
| Coding sequence length (bp) | 1470 |
| Protein length (aa) | 490 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16114 | Citrate_bind | ATP citrate lyase citrate-binding | 3.3E-88 | 298 | 474 |
| PF08442 | ATP-grasp_2 | ATP-grasp domain | 3.3E-08 | 72 | 228 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13907|ACL2_SCHPO | Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1 SV=1 | 1 | 480 | 0.0E+00 |
| sp|Q2TCH3|ACLY_SHEEP | ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 | 1 | 474 | 1.0E-136 |
| sp|Q32PF2|ACLY_BOVIN | ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 | 1 | 474 | 2.0E-136 |
| sp|P53396|ACLY_HUMAN | ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 | 1 | 474 | 3.0E-135 |
| sp|P16638|ACLY_RAT | ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 | 1 | 476 | 2.0E-134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13907|ACL2_SCHPO | Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1 SV=1 | 1 | 480 | 0.0E+00 |
| sp|Q2TCH3|ACLY_SHEEP | ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 | 1 | 474 | 1.0E-136 |
| sp|Q32PF2|ACLY_BOVIN | ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 | 1 | 474 | 2.0E-136 |
| sp|P53396|ACLY_HUMAN | ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 | 1 | 474 | 3.0E-135 |
| sp|P16638|ACLY_RAT | ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 | 1 | 476 | 2.0E-134 |
| sp|Q91V92|ACLY_MOUSE | ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 | 1 | 474 | 2.0E-134 |
| sp|P53585|ACLY_CAEEL | Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=3 SV=1 | 1 | 474 | 6.0E-120 |
| sp|Q2QNG7|ACLA3_ORYSJ | ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 | 1 | 474 | 4.0E-105 |
| sp|Q2QZ86|ACLA2_ORYSJ | ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 | 1 | 474 | 2.0E-104 |
| sp|O80526|ACLA3_ARATH | ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 | 1 | 474 | 7.0E-102 |
| sp|O22718|ACLA2_ARATH | ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 | 1 | 474 | 7.0E-102 |
| sp|Q9SGY2|ACLA1_ARATH | ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 | 1 | 474 | 5.0E-100 |
| sp|Q53JY8|ACLA1_ORYSJ | ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 | 1 | 474 | 9.0E-91 |
| sp|B1YIL7|SUCC_EXIS2 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1 | 85 | 447 | 1.0E-09 |
| sp|Q4L5U8|SUCC_STAHJ | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sucC PE=3 SV=1 | 85 | 442 | 2.0E-07 |
| sp|Q57663|SUCC_METJA | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucC PE=3 SV=1 | 75 | 255 | 3.0E-07 |
| sp|Q49X32|SUCC_STAS1 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sucC PE=3 SV=1 | 85 | 447 | 1.0E-06 |
| sp|B9DPG0|SUCC_STACT | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus carnosus (strain TM300) GN=sucC PE=3 SV=1 | 85 | 447 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1570 MSAKSILEADGKAILNYHLTRAPVIKPSPLPRPTTHNAAPRLASLHFPEDANVTDVLNQAEVTYPWLLQAGAKFV AKPDQLIKRRGKSGLLALNKSWAEAKAWIAERAGKEQKVEHTTGVLRQFLVEPFVPHPQDTEYYININSVRDGDW ILFTHEGGVDVGDVDAKAEKLLIPVDLSQYPSNDEIAAALLKKVPKGVHNVLVDFITRLYAVYVDCQFTYLEINP LVVIPNEAKTSAEVHFLDLAAKLDQTADFECGVKWAIARSPAALGLTNVMAVNGEKVNIDAGPPMDFPAPFGREL TKEEAYIADLDAKTGASLKLTVLNPNGRIWTLVAGGGASVVYADAIASAGFADDLANYGEYSGAPTESQTYHYAR TVLDLMLRAPMSDKGKVLFIGGGIANFTNVASTFKGVIRALRDFATQLNEHNVQIWVRRAGPNYQEGLKNMKAAT QELGLKAKIFGPEMHVSGIVPLALVPGKWEESKAEEFRG* |
| Coding | >OphauB2|1570 ATGTCTGCAAAATCCATCCTCGAGGCCGATGGCAAGGCTATCCTCAACTACCACCTGACGCGAGCTCCCGTCATC AAGCCGAGTCCTCTGCCTCGGCCCACGACGCACAATGCTGCCCCCAGGCTGGCTTCTCTGCATTTCCCCGAGGAC GCCAATGTCACCGACGTGCTCAACCAGGCCGAGGTGACGTATCCCTGGCTGCTGCAAGCTGGCGCAAAGTTTGTG GCCAAGCCCGACCAGCTCATTAAGCGACGCGGCAAAAGCGGCTTGCTGGCCCTCAACAAGTCGTGGGCAGAAGCC AAGGCTTGGATTGCAGAGCGAGCTGGCAAGGAGCAAAAGGTGGAGCACACGACTGGCGTCTTGAGACAGTTTCTC GTTGAGCCTTTTGTCCCCCATCCGCAGGACACCGAGTACTACATCAACATCAACTCTGTCCGTGATGGCGACTGG ATCCTCTTTACGCACGAAGGCGGTGTCGACGTTGGCGACGTGGATGCCAAGGCCGAGAAGCTTCTCATTCCTGTT GACCTGTCGCAATACCCTTCAAACGACGAGATTGCCGCTGCGCTACTCAAAAAGGTGCCCAAGGGGGTGCACAAT GTGCTCGTCGACTTCATCACCCGCCTCTACGCCGTCTACGTCGACTGCCAGTTTACCTATCTCGAAATCAACCCT CTGGTGGTGATACCAAACGAGGCCAAGACTTCTGCCGAGGTTCATTTTCTCGACCTGGCTGCCAAGCTGGATCAG ACTGCCGACTTTGAGTGCGGTGTCAAGTGGGCCATTGCTCGCTCTCCCGCCGCGCTTGGTCTGACCAATGTCATG GCGGTAAACGGCGAAAAGGTCAACATTGATGCCGGCCCCCCCATGGACTTTCCTGCGCCCTTTGGCCGCGAGCTC ACCAAGGAGGAGGCCTACATTGCAGACCTTGACGCCAAGACTGGCGCGTCGCTCAAGCTGACGGTGCTCAACCCC AACGGTCGCATCTGGACCTTGGTTGCTGGTGGCGGTGCATCAGTCGTGTATGCCGACGCCATTGCCTCGGCAGGC TTTGCCGACGACTTGGCCAACTATGGCGAGTACTCGGGAGCACCGACGGAGTCGCAGACGTATCACTACGCCCGC ACCGTGCTCGATTTGATGCTTCGTGCCCCAATGTCGGACAAGGGCAAGGTGCTCTTCATTGGCGGTGGCATTGCC AACTTCACAAATGTGGCCAGCACCTTCAAGGGCGTCATTCGAGCATTGCGCGACTTTGCCACACAGCTCAATGAG CACAATGTGCAAATTTGGGTTCGCCGCGCCGGGCCAAACTACCAAGAGGGCCTCAAGAACATGAAGGCCGCCACT CAGGAGCTCGGGCTCAAGGCCAAGATTTTCGGGCCCGAGATGCACGTCTCTGGCATCGTGCCGCTGGCTCTGGTG CCCGGCAAATGGGAAGAGAGCAAGGCTGAAGAGTTTAGAGGGTAG |
| Transcript | >OphauB2|1570 ATGTCTGCAAAATCCATCCTCGAGGCCGATGGCAAGGCTATCCTCAACTACCACCTGACGCGAGCTCCCGTCATC AAGCCGAGTCCTCTGCCTCGGCCCACGACGCACAATGCTGCCCCCAGGCTGGCTTCTCTGCATTTCCCCGAGGAC GCCAATGTCACCGACGTGCTCAACCAGGCCGAGGTGACGTATCCCTGGCTGCTGCAAGCTGGCGCAAAGTTTGTG GCCAAGCCCGACCAGCTCATTAAGCGACGCGGCAAAAGCGGCTTGCTGGCCCTCAACAAGTCGTGGGCAGAAGCC AAGGCTTGGATTGCAGAGCGAGCTGGCAAGGAGCAAAAGGTGGAGCACACGACTGGCGTCTTGAGACAGTTTCTC GTTGAGCCTTTTGTCCCCCATCCGCAGGACACCGAGTACTACATCAACATCAACTCTGTCCGTGATGGCGACTGG ATCCTCTTTACGCACGAAGGCGGTGTCGACGTTGGCGACGTGGATGCCAAGGCCGAGAAGCTTCTCATTCCTGTT GACCTGTCGCAATACCCTTCAAACGACGAGATTGCCGCTGCGCTACTCAAAAAGGTGCCCAAGGGGGTGCACAAT GTGCTCGTCGACTTCATCACCCGCCTCTACGCCGTCTACGTCGACTGCCAGTTTACCTATCTCGAAATCAACCCT CTGGTGGTGATACCAAACGAGGCCAAGACTTCTGCCGAGGTTCATTTTCTCGACCTGGCTGCCAAGCTGGATCAG ACTGCCGACTTTGAGTGCGGTGTCAAGTGGGCCATTGCTCGCTCTCCCGCCGCGCTTGGTCTGACCAATGTCATG GCGGTAAACGGCGAAAAGGTCAACATTGATGCCGGCCCCCCCATGGACTTTCCTGCGCCCTTTGGCCGCGAGCTC ACCAAGGAGGAGGCCTACATTGCAGACCTTGACGCCAAGACTGGCGCGTCGCTCAAGCTGACGGTGCTCAACCCC AACGGTCGCATCTGGACCTTGGTTGCTGGTGGCGGTGCATCAGTCGTGTATGCCGACGCCATTGCCTCGGCAGGC TTTGCCGACGACTTGGCCAACTATGGCGAGTACTCGGGAGCACCGACGGAGTCGCAGACGTATCACTACGCCCGC ACCGTGCTCGATTTGATGCTTCGTGCCCCAATGTCGGACAAGGGCAAGGTGCTCTTCATTGGCGGTGGCATTGCC AACTTCACAAATGTGGCCAGCACCTTCAAGGGCGTCATTCGAGCATTGCGCGACTTTGCCACACAGCTCAATGAG CACAATGTGCAAATTTGGGTTCGCCGCGCCGGGCCAAACTACCAAGAGGGCCTCAAGAACATGAAGGCCGCCACT CAGGAGCTCGGGCTCAAGGCCAAGATTTTCGGGCCCGAGATGCACGTCTCTGGCATCGTGCCGCTGGCTCTGGTG CCCGGCAAATGGGAAGAGAGCAAGGCTGAAGAGTTTAGAGGGTAG |
| Gene | >OphauB2|1570 ATGTCTGCAAAATCCATCCTCGAGGCCGATGGCAAGGCTATCCTCAACTACCACCTGACGCGAGCTCCCGTCATC AAGCCGAGTCCTCTGCCTCGGCCCACGACGCACAATGCTGCCCCCAGGCTGGCTTCTCTGCATTTCCCCGAGGAC GCCAATGTCACCGACGTGCTCAACCAGGCCGAGGTGACGTATCCCTGGCTGCTGCAAGCTGGCGCAAAGTTTGTG GCCAAGCCCGACCAGCTCATTAAGCGACGCGGCAAAAGCGGCTTGCTGGCCCTCAACAAGTCGTGGGCAGAAGCC AAGGCTTGGATTGCAGAGCGAGCTGGCAAGGAGCAAAAGGTGGAGCACACGACTGGCGTCTTGAGACAGTTTCTC GTTGAGCCTTTTGTCCCCCATCCGCAGGACACCGAGTACTACATCAACATCAACTCTGTCCGTGATGTAAGTACA GTCTTGGTTTGCTCATTCCTGTGCAACAAGGCGCGTTGCTGCTTGTTGAATGCATAGGCGAGTCAAGACACAGGC TGACGCAACACAAATATGCAGGGCGACTGGATCCTCTTTACGCACGAAGGCGGTGTCGACGTTGGCGACGTGGAT GCCAAGGCCGAGAAGCTTCTCATTCCTGTTGACCTGTCGCAATACCCTTCAAACGACGAGATTGCCGCTGCGCTA CTCAAAAAGGTGCCCAAGGGGGTGCACAATGTGCTCGTCGACTTCATCACCCGCCTCTACGCCGTCTACGTCGAC TGCCAGTTTACCTATCTCGAAATCAACCCTCTGGTGGTGATACCAAACGAGGCCAAGACTTCTGCCGAGGTTCAT TTTCTCGACCTGGCTGCCAAGCTGGATCAGACTGCCGACTTTGAGTGCGGTGTCAAGTGGGCCATTGCTCGCTCT CCCGCCGCGCTTGGTCTGACCAATGTCATGGCGGTAAACGGCGAAAAGGTCAACATTGATGCCGGCCCCCCCATG GACTTTCCTGCGCCCTTTGGCCGCGAGCTCACCAAGGAGGAGGCCTACATTGCAGACCTTGACGCCAAGACTGGC GCGTCGCTCAAGCTGACGGTGCTCAACCCCAACGGTCGCATCTGGACCTTGGTTGCTGGTGGCGGTGCATCAGTC GTGTATGCCGACGCCATTGCCTCGGCAGGCTTTGCCGACGACTTGGCCAACTATGGCGAGTACTCGGGAGCACCG ACGGAGTCGCAGACGTATCACTACGCCCGCACCGTGCTCGATTTGATGCTTCGTGCCCCAATGTCGGACAAGGGC AAGGTGCTCTTCATTGGCGGTGGCATTGCCAACTTCACAAATGTGGCCAGCACCTTCAAGGGCGTCATTCGAGCA TTGCGCGACTTTGCCACACAGCTCAATGAGCACAATGTGCAAATTTGGGTTCGCCGCGCCGGGCCAAACTACCAA GAGGGCCTCAAGAACATGAAGGCCGCCACTCAGGAGCTCGGGCTCAAGGCCAAGATTTTCGGGCCCGAGATGCAC GTCTCTGGCATCGTGCCGCTGGCTCTGGTGCCCGGCAAATGGGAAGAGAGCAAGGCTGAAGAGTTTAGAGGGTAG |