Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1568
Gene name
LocationContig_142:4120..4662
Strand-
Gene length (bp)542
Transcript length (bp)411
Coding sequence length (bp)411
Protein length (aa) 137

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e 1.6E-14 53 103

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P20084|RM33_YEAST 54S ribosomal protein L33, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL33 PE=1 SV=4 50 131 6.0E-14
sp|O59856|RM33_SCHPO Probable 54S ribosomal protein L33, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl33 PE=3 SV=4 50 129 4.0E-10
sp|B1I1L7|RL30_DESAP 50S ribosomal protein L30 OS=Desulforudis audaxviator (strain MP104C) GN=rpmD PE=3 SV=2 51 108 4.0E-08
sp|Q39XY8|RL30_GEOMG 50S ribosomal protein L30 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpmD PE=3 SV=1 53 107 5.0E-08
sp|A0R8J8|RL30_BACAH 50S ribosomal protein L30 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpmD PE=3 SV=1 53 108 6.0E-08
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|P20084|RM33_YEAST 54S ribosomal protein L33, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL33 PE=1 SV=4 50 131 6.0E-14
sp|O59856|RM33_SCHPO Probable 54S ribosomal protein L33, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl33 PE=3 SV=4 50 129 4.0E-10
sp|B1I1L7|RL30_DESAP 50S ribosomal protein L30 OS=Desulforudis audaxviator (strain MP104C) GN=rpmD PE=3 SV=2 51 108 4.0E-08
sp|Q39XY8|RL30_GEOMG 50S ribosomal protein L30 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpmD PE=3 SV=1 53 107 5.0E-08
sp|A0R8J8|RL30_BACAH 50S ribosomal protein L30 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|C3P9S3|RL30_BACAA 50S ribosomal protein L30 OS=Bacillus anthracis (strain A0248) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|C3LJA0|RL30_BACAC 50S ribosomal protein L30 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|Q81VR2|RL30_BACAN 50S ribosomal protein L30 OS=Bacillus anthracis GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|B7JKD7|RL30_BACC0 50S ribosomal protein L30 OS=Bacillus cereus (strain AH820) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|Q73F78|RL30_BACC1 50S ribosomal protein L30 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|B7HJ66|RL30_BACC4 50S ribosomal protein L30 OS=Bacillus cereus (strain B4264) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|B7HQW2|RL30_BACC7 50S ribosomal protein L30 OS=Bacillus cereus (strain AH187) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|B9IZL2|RL30_BACCQ 50S ribosomal protein L30 OS=Bacillus cereus (strain Q1) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|Q81J24|RL30_BACCR 50S ribosomal protein L30 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|Q63H72|RL30_BACCZ 50S ribosomal protein L30 OS=Bacillus cereus (strain ZK / E33L) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|Q6HPP0|RL30_BACHK 50S ribosomal protein L30 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|C1ET57|RL30_BACC3 50S ribosomal protein L30 OS=Bacillus cereus (strain 03BB102) GN=rpmD PE=3 SV=1 53 108 6.0E-08
sp|A7GK38|RL30_BACCN 50S ribosomal protein L30 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=rpmD PE=3 SV=1 53 108 8.0E-08
sp|A0M580|RL30_GRAFK 50S ribosomal protein L30 OS=Gramella forsetii (strain KT0803) GN=rpmD PE=3 SV=2 50 108 9.0E-08
sp|A9VP95|RL30_BACWK 50S ribosomal protein L30 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpmD PE=3 SV=1 53 108 9.0E-08
sp|A7NR45|RL30_ROSCS 50S ribosomal protein L30 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpmD PE=3 SV=1 50 109 1.0E-07
sp|B7IT37|RL30_BACC2 50S ribosomal protein L30 OS=Bacillus cereus (strain G9842) GN=rpmD PE=3 SV=1 53 108 2.0E-07
sp|C5D3T5|RL30_GEOSW 50S ribosomal protein L30 OS=Geobacillus sp. (strain WCH70) GN=rpmD PE=3 SV=1 53 107 3.0E-07
sp|C0ZIJ8|RL30_BREBN 50S ribosomal protein L30 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rpmD PE=3 SV=1 50 107 3.0E-07
sp|Q749A5|RL30_GEOSL 50S ribosomal protein L30 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpmD PE=3 SV=1 53 107 4.0E-07
sp|Q1AU47|RL30_RUBXD 50S ribosomal protein L30 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpmD PE=3 SV=1 50 107 4.0E-07
sp|P19947|RL30_BACSU 50S ribosomal protein L30 OS=Bacillus subtilis (strain 168) GN=rpmD PE=1 SV=2 50 107 5.0E-07
sp|A7Z0Q6|RL30_BACMF 50S ribosomal protein L30 OS=Bacillus methylotrophicus (strain DSM 23117 / BGSC 10A6 / FZB42) GN=rpmD PE=3 SV=1 50 107 5.0E-07
sp|Q65P89|RL30_BACLD 50S ribosomal protein L30 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=rpmD PE=3 SV=1 50 107 6.0E-07
sp|Q5L3S1|RL30_GEOKA 50S ribosomal protein L30 OS=Geobacillus kaustophilus (strain HTA426) GN=rpmD PE=3 SV=1 53 107 7.0E-07
sp|A4J129|RL30_DESRM 50S ribosomal protein L30 OS=Desulfotomaculum reducens (strain MI-1) GN=rpmD PE=3 SV=1 50 108 7.0E-07
sp|A6KYH7|RL30_BACV8 50S ribosomal protein L30 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpmD PE=3 SV=1 50 105 7.0E-07
sp|P02431|RL30_GEOSE 50S ribosomal protein L30 OS=Geobacillus stearothermophilus GN=rpmD PE=1 SV=2 53 107 9.0E-07
sp|A0ALV0|RL30_LISW6 50S ribosomal protein L30 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|A4IJK6|RL30_GEOTN 50S ribosomal protein L30 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpmD PE=3 SV=1 53 107 1.0E-06
sp|A5USH1|RL30_ROSS1 50S ribosomal protein L30 OS=Roseiflexus sp. (strain RS-1) GN=rpmD PE=3 SV=1 53 115 1.0E-06
sp|Q7ANU8|RL30_LISIN 50S ribosomal protein L30 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|C1KZG2|RL30_LISMC 50S ribosomal protein L30 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|Q71WG4|RL30_LISMF 50S ribosomal protein L30 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|B8DB26|RL30_LISMH 50S ribosomal protein L30 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|Q927M5|RL30_LISMO 50S ribosomal protein L30 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rpmD PE=3 SV=1 50 107 1.0E-06
sp|A4XBM8|RL30_SALTO 50S ribosomal protein L30 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpmD PE=3 SV=1 50 108 2.0E-06
sp|A6GZ81|RL30_FLAPJ 50S ribosomal protein L30 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpmD PE=3 SV=1 50 108 3.0E-06
sp|C6E4N9|RL30_GEOSM 50S ribosomal protein L30 OS=Geobacter sp. (strain M21) GN=rpmD PE=3 SV=1 51 107 3.0E-06
sp|B5EFR8|RL30_GEOBB 50S ribosomal protein L30 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpmD PE=3 SV=1 51 107 3.0E-06
sp|A8F9A3|RL30_BACP2 50S ribosomal protein L30 OS=Bacillus pumilus (strain SAFR-032) GN=rpmD PE=3 SV=1 51 107 3.0E-06
sp|A8ZV75|RL30_DESOH 50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpmD PE=3 SV=2 53 108 5.0E-06
sp|A5FN03|RL30_FLAJ1 50S ribosomal protein L30 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rpmD PE=3 SV=1 50 108 5.0E-06
sp|B9LJF0|RL30_CHLSY 50S ribosomal protein L30 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpmD PE=3 SV=1 50 102 5.0E-06
sp|A9WH84|RL30_CHLAA 50S ribosomal protein L30 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpmD PE=3 SV=1 50 102 5.0E-06
sp|Q64NM6|RL30_BACFR 50S ribosomal protein L30 OS=Bacteroides fragilis (strain YCH46) GN=rpmD PE=3 SV=1 50 105 6.0E-06
sp|Q5L8C7|RL30_BACFN 50S ribosomal protein L30 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) GN=rpmD PE=3 SV=1 50 105 6.0E-06
sp|B8G6Q7|RL30_CHLAD 50S ribosomal protein L30 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpmD PE=3 SV=1 50 102 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 35 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1568
MRGAVFGRQADDAQLASPPVENILWVRVQVTCYALHLEQHRTEYHHLFSMSYLRITLHRSSIGMPQRSRHVLAAL
GLHRRMQTVFHRAEPNIVGMVFRVKELVRVSEAPRPLTPKQLRAERRPPSGFYVEKAVPRQ*
Coding >OphauB2|1568
ATGAGGGGAGCAGTATTTGGCCGCCAGGCTGATGATGCGCAACTTGCTTCTCCACCTGTAGAAAACATTTTGTGG
GTCCGAGTGCAAGTCACGTGCTATGCGCTTCACCTCGAGCAGCACAGGACCGAATACCACCATCTATTCAGCATG
TCCTACCTGCGCATCACGCTACACCGCTCCTCAATTGGCATGCCCCAGCGCTCTCGCCATGTCCTAGCTGCCCTG
GGCCTGCACCGTCGTATGCAGACCGTATTTCACCGTGCCGAACCAAATATTGTCGGCATGGTTTTCCGCGTCAAG
GAGCTTGTTCGCGTCTCAGAAGCGCCTCGTCCGTTGACGCCCAAGCAGCTGCGCGCTGAAAGGAGGCCCCCCTCT
GGTTTCTATGTCGAAAAAGCAGTGCCCAGACAATAG
Transcript >OphauB2|1568
ATGAGGGGAGCAGTATTTGGCCGCCAGGCTGATGATGCGCAACTTGCTTCTCCACCTGTAGAAAACATTTTGTGG
GTCCGAGTGCAAGTCACGTGCTATGCGCTTCACCTCGAGCAGCACAGGACCGAATACCACCATCTATTCAGCATG
TCCTACCTGCGCATCACGCTACACCGCTCCTCAATTGGCATGCCCCAGCGCTCTCGCCATGTCCTAGCTGCCCTG
GGCCTGCACCGTCGTATGCAGACCGTATTTCACCGTGCCGAACCAAATATTGTCGGCATGGTTTTCCGCGTCAAG
GAGCTTGTTCGCGTCTCAGAAGCGCCTCGTCCGTTGACGCCCAAGCAGCTGCGCGCTGAAAGGAGGCCCCCCTCT
GGTTTCTATGTCGAAAAAGCAGTGCCCAGACAATAG
Gene >OphauB2|1568
ATGAGGGGAGCAGTATTTGGCCGCCAGGCTGATGATGCGCAACTTGCTTCTCCACCTGTAGAAAACATTTTGTGG
GTCCGAGTGCAAGTCACGTGCTATGCGCTTCACCTCGAGGTCCAGCTGCAAAAGCCAGCAGCCATATTGCGCTTG
ACAAGCTCACAACGACAAGCAGCACAGGTAAGTCTGCAAGGCCCTTTTAACCTATACCATGTAGCCATCCAACTC
GAGCAAGCATGTTGAAACAACCCTCCAGGACCGAATACCACCATCTATTCAGCATGTCCTACCTGCGCATCACGC
TACACCGCTCCTCAATTGGCATGCCCCAGCGCTCTCGCCATGTCCTAGCTGCCCTGGGCCTGCACCGTCGTATGC
AGACCGTATTTCACCGTGCCGAACCAAATATTGTCGGCATGGTTTTCCGCGTCAAGGAGCTTGTTCGCGTCTCAG
AAGCGCCTCGTCCGTTGACGCCCAAGCAGCTGCGCGCTGAAAGGAGGCCCCCCTCTGGTTTCTATGTCGAAAAAG
CAGTGCCCAGACAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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