© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1554 |
| Gene name | |
| Location | Contig_141:22083..23401 |
| Strand | + |
| Gene length (bp) | 1318 |
| Transcript length (bp) | 1149 |
| Coding sequence length (bp) | 1149 |
| Protein length (aa) | 383 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05637 | Glyco_transf_34 | galactosyl transferase GMA12/MNN10 family | 6.3E-10 | 153 | 294 |
| PF03407 | Nucleotid_trans | Nucleotide-diphospho-sugar transferase | 1.1E-05 | 174 | 299 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0016740 | transferase activity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1554 MAWDTLVIRWWQRILIPIALFSLFICLIWTFGGTGVHPATTLLASKDSSLRSFLSAPSASSTRPSWHGDAFTQAV KSLYDPILHPITAPNYTDDANTYYITGEPMYTTSFGKRLLVLDIDTRPMTDDGQVRSQNVHWPGMEPMAAGFLSH YLYAIIHGYDYRFVRAPEYPDRHLTWAKVPMLRDALKEYEFVVFLDQDAMFHRPHIPLEWLMNHWNHTSETSLMV AKDPDNPHNTDSNGNLFWNTGFIIAQNSSRLHELFDAWIECPRDTTSPGCSHYAYNWPHEQGALRTFIQQGLFNR SEDIHPVPCAEANGSPWTLDSDGAGCGGVFVRHFWTNGKPHPPEELAENVMHYFVQQLHESFLTQGQHVFADVSG QNEPKRR* |
| Coding | >OphauB2|1554 ATGGCGTGGGATACGTTGGTGATACGCTGGTGGCAGCGAATTCTCATTCCCATTGCTCTTTTTTCTCTCTTTATC TGTTTAATCTGGACATTTGGAGGAACTGGCGTCCATCCGGCTACCACTCTTCTCGCGAGCAAGGATTCGAGCCTT CGTTCCTTCTTATCAGCGCCTAGTGCCTCGTCGACGCGCCCATCATGGCATGGTGATGCTTTTACGCAGGCCGTA AAGTCGCTCTATGACCCGATTCTGCACCCCATCACCGCTCCGAATTATACCGATGATGCGAATACTTATTACATC ACGGGCGAGCCAATGTATACGACTAGTTTTGGGAAACGTTTGCTGGTGCTGGATATCGACACAAGACCCATGACT GACGATGGGCAAGTCAGGAGCCAAAACGTGCACTGGCCGGGAATGGAGCCCATGGCTGCTGGCTTTTTAAGTCAC TATCTCTACGCAATAATTCACGGCTACGACTACCGATTCGTGCGAGCCCCTGAATATCCCGACCGGCACCTGACG TGGGCCAAAGTGCCAATGCTACGAGACGCATTAAAAGAATATGAATTCGTCGTATTCCTCGACCAGGATGCCATG TTTCACCGCCCGCACATCCCCCTGGAATGGCTCATGAATCACTGGAACCACACGTCAGAAACCTCGCTCATGGTA GCCAAAGACCCCGACAACCCTCACAACACGGACAGCAATGGCAACCTCTTCTGGAACACTGGCTTCATCATTGCG CAAAACAGCAGCCGCCTCCACGAGCTCTTTGATGCCTGGATCGAGTGCCCGCGCGATACCACTTCGCCCGGCTGT AGCCACTACGCCTATAACTGGCCACATGAACAGGGCGCGCTCAGGACATTTATCCAGCAGGGCCTCTTTAATCGT TCTGAGGATATTCATCCCGTGCCGTGCGCGGAAGCCAATGGGTCGCCGTGGACTTTGGACTCGGATGGGGCTGGA TGTGGTGGCGTCTTTGTGCGGCACTTTTGGACCAACGGCAAGCCTCATCCGCCTGAAGAGTTGGCTGAGAATGTG ATGCACTACTTTGTGCAGCAATTGCACGAGTCCTTTCTTACGCAAGGCCAACACGTCTTTGCTGATGTGTCGGGA CAAAACGAACCCAAGCGTCGCTAA |
| Transcript | >OphauB2|1554 ATGGCGTGGGATACGTTGGTGATACGCTGGTGGCAGCGAATTCTCATTCCCATTGCTCTTTTTTCTCTCTTTATC TGTTTAATCTGGACATTTGGAGGAACTGGCGTCCATCCGGCTACCACTCTTCTCGCGAGCAAGGATTCGAGCCTT CGTTCCTTCTTATCAGCGCCTAGTGCCTCGTCGACGCGCCCATCATGGCATGGTGATGCTTTTACGCAGGCCGTA AAGTCGCTCTATGACCCGATTCTGCACCCCATCACCGCTCCGAATTATACCGATGATGCGAATACTTATTACATC ACGGGCGAGCCAATGTATACGACTAGTTTTGGGAAACGTTTGCTGGTGCTGGATATCGACACAAGACCCATGACT GACGATGGGCAAGTCAGGAGCCAAAACGTGCACTGGCCGGGAATGGAGCCCATGGCTGCTGGCTTTTTAAGTCAC TATCTCTACGCAATAATTCACGGCTACGACTACCGATTCGTGCGAGCCCCTGAATATCCCGACCGGCACCTGACG TGGGCCAAAGTGCCAATGCTACGAGACGCATTAAAAGAATATGAATTCGTCGTATTCCTCGACCAGGATGCCATG TTTCACCGCCCGCACATCCCCCTGGAATGGCTCATGAATCACTGGAACCACACGTCAGAAACCTCGCTCATGGTA GCCAAAGACCCCGACAACCCTCACAACACGGACAGCAATGGCAACCTCTTCTGGAACACTGGCTTCATCATTGCG CAAAACAGCAGCCGCCTCCACGAGCTCTTTGATGCCTGGATCGAGTGCCCGCGCGATACCACTTCGCCCGGCTGT AGCCACTACGCCTATAACTGGCCACATGAACAGGGCGCGCTCAGGACATTTATCCAGCAGGGCCTCTTTAATCGT TCTGAGGATATTCATCCCGTGCCGTGCGCGGAAGCCAATGGGTCGCCGTGGACTTTGGACTCGGATGGGGCTGGA TGTGGTGGCGTCTTTGTGCGGCACTTTTGGACCAACGGCAAGCCTCATCCGCCTGAAGAGTTGGCTGAGAATGTG ATGCACTACTTTGTGCAGCAATTGCACGAGTCCTTTCTTACGCAAGGCCAACACGTCTTTGCTGATGTGTCGGGA CAAAACGAACCCAAGCGTCGCTAA |
| Gene | >OphauB2|1554 ATGGCGTGGGATACGTTGGTGATACGCTGGTGGCAGCGAATTCTCATTCCCATTGCTCTTTTTTCTCTCTTTATC TGTTTAATCTGGACATTTGGAGGAACTGGCGTCCATCCGGCTACCACTCTTCTCGCGTCAGTATCGCCATCTTTT CAACCTTTGCTAGATTATTTGTTGGCAATATTCTGACGGGGTTTACCATTAGGAGCAAGGATTCGAGCCTTCGTT CCTTCTTATCAGCGCCTAGTGCCTCGTCGACGCGCCCATCATGGCATGGTGATGCTTTTACGCAGGCCGTAAAGT CGCTCTATGACCCGATTCTGCACCCCATCACCGCTCCGAATTATACCGATGATGCGAATACTTATTACATCACGG GCGAGCCAATGTATACGACTAGTTTTGGGAAACGTTTGCTGGTGCTGGATATCGACACAAGACCCATGACTGACG ATGGGCAAGTCAGGAGCCAAAACGTGCACTGGCCGGGAATGGAGCCCATGGCTGCTGGCTTTTTAAGTCACTATC TCTACGGTGCGTGGCTGCTGTCAGACAATAATGGCAAGAATTAAAGGGGAAGCAGGAGAGCATTTGGAAGGGGAA CATGGGGCTAATTGGTGTGTTTCGAGCAGCAATAATTCACGGCTACGACTACCGATTCGTGCGAGCCCCTGAATA TCCCGACCGGCACCTGACGTGGGCCAAAGTGCCAATGCTACGAGACGCATTAAAAGAATATGAATTCGTCGTATT CCTCGACCAGGATGCCATGTTTCACCGCCCGCACATCCCCCTGGAATGGCTCATGAATCACTGGAACCACACGTC AGAAACCTCGCTCATGGTAGCCAAAGACCCCGACAACCCTCACAACACGGACAGCAATGGCAACCTCTTCTGGAA CACTGGCTTCATCATTGCGCAAAACAGCAGCCGCCTCCACGAGCTCTTTGATGCCTGGATCGAGTGCCCGCGCGA TACCACTTCGCCCGGCTGTAGCCACTACGCCTATAACTGGCCACATGAACAGGGCGCGCTCAGGACATTTATCCA GCAGGGCCTCTTTAATCGTTCTGAGGATATTCATCCCGTGCCGTGCGCGGAAGCCAATGGGTCGCCGTGGACTTT GGACTCGGATGGGGCTGGATGTGGTGGCGTCTTTGTGCGGCACTTTTGGACCAACGGCAAGCCTCATCCGCCTGA AGAGTTGGCTGAGAATGTGATGCACTACTTTGTGCAGCAATTGCACGAGTCCTTTCTTACGCAAGGCCAACACGT CTTTGCTGATGTGTCGGGACAAAACGAACCCAAGCGTCGCTAA |