Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1553
Gene name
LocationContig_141:20001..20998
Strand-
Gene length (bp)997
Transcript length (bp)864
Coding sequence length (bp)864
Protein length (aa) 288

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13551 HTH_29 Winged helix-turn helix 1.8E-08 27 83
PF13518 HTH_28 Helix-turn-helix domain 1.4E-07 25 75
PF00292 PAX 'Paired box' domain 7.3E-05 23 93

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0003677 DNA binding Yes
GO:0065007 biological regulation No
GO:0010468 regulation of gene expression No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:0009889 regulation of biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0050789 regulation of biological process No
GO:0031323 regulation of cellular metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1901363 heterocyclic compound binding No
GO:0050794 regulation of cellular process No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0019222 regulation of metabolic process No
GO:0003676 nucleic acid binding No
GO:0080090 regulation of primary metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 51 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-turn-helix

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1553
MASETKPLDSFLSRGRNNEISLELRTAIVEAVNSGRKQSDAARDFNVSRQSVSRLIQRLKESGSVARSKRSGRPR
KIVTARQTRAALRKARRELRASAQASGQQKTSSDSLAAPTATEAEQLGDANGLRTGVDGVENSATESTDGQARGA
VSVNGEPMSQALEDLRSEIRSEMRSIRAGMQEMVSNINTVNDKVDALNRKLAISDRNSIARLQNSIISHDGVYLV
PLYSPITGEVAHNYPSTLKHLDTFTASQVDALLTQLGEPGGGQPPTRKRQLYMALGITARVV*
Coding >OphauB2|1553
ATGGCATCGGAAACAAAACCGCTTGATTCATTTTTAAGTCGTGGCCGTAACAATGAAATTAGCTTGGAGCTTCGT
ACGGCGATTGTGGAAGCTGTAAATTCTGGCCGCAAACAGAGCGATGCGGCCAGAGATTTCAACGTGTCACGCCAG
AGCGTGTCACGCCTCATTCAAAGGCTCAAGGAGAGCGGCTCGGTTGCTCGAAGCAAACGCAGTGGACGGCCGAGA
AAAATTGTCACGGCGAGGCAAACACGGGCGGCTCTTCGCAAAGCGCGTCGCGAATTGAGAGCATCTGCGCAAGCA
TCGGGGCAACAGAAGACCAGCAGTGATTCTTTGGCGGCACCCACAGCAACTGAGGCTGAGCAATTAGGAGATGCT
AATGGTCTACGGACGGGCGTTGATGGTGTGGAAAACTCTGCGACAGAGAGTACAGATGGTCAGGCAAGAGGGGCA
GTGAGTGTAAACGGGGAGCCAATGTCGCAGGCACTCGAGGATTTGAGGTCGGAAATACGATCTGAGATGAGATCT
ATCCGGGCGGGAATGCAGGAAATGGTGTCAAACATCAACACGGTCAACGACAAGGTGGATGCTTTGAACCGCAAG
CTGGCAATCTCTGACAGAAACTCAATTGCACGGTTACAAAATAGCATCATTAGCCACGACGGCGTCTATTTAGTG
CCATTGTATAGCCCCATAACAGGAGAGGTGGCACACAACTACCCATCAACATTAAAACACCTCGACACCTTTACC
GCAAGCCAGGTAGATGCTTTGTTGACACAACTTGGCGAGCCAGGTGGAGGGCAGCCACCCACCAGAAAACGGCAA
CTCTACATGGCCTTGGGAATTACTGCACGTGTAGTATGA
Transcript >OphauB2|1553
ATGGCATCGGAAACAAAACCGCTTGATTCATTTTTAAGTCGTGGCCGTAACAATGAAATTAGCTTGGAGCTTCGT
ACGGCGATTGTGGAAGCTGTAAATTCTGGCCGCAAACAGAGCGATGCGGCCAGAGATTTCAACGTGTCACGCCAG
AGCGTGTCACGCCTCATTCAAAGGCTCAAGGAGAGCGGCTCGGTTGCTCGAAGCAAACGCAGTGGACGGCCGAGA
AAAATTGTCACGGCGAGGCAAACACGGGCGGCTCTTCGCAAAGCGCGTCGCGAATTGAGAGCATCTGCGCAAGCA
TCGGGGCAACAGAAGACCAGCAGTGATTCTTTGGCGGCACCCACAGCAACTGAGGCTGAGCAATTAGGAGATGCT
AATGGTCTACGGACGGGCGTTGATGGTGTGGAAAACTCTGCGACAGAGAGTACAGATGGTCAGGCAAGAGGGGCA
GTGAGTGTAAACGGGGAGCCAATGTCGCAGGCACTCGAGGATTTGAGGTCGGAAATACGATCTGAGATGAGATCT
ATCCGGGCGGGAATGCAGGAAATGGTGTCAAACATCAACACGGTCAACGACAAGGTGGATGCTTTGAACCGCAAG
CTGGCAATCTCTGACAGAAACTCAATTGCACGGTTACAAAATAGCATCATTAGCCACGACGGCGTCTATTTAGTG
CCATTGTATAGCCCCATAACAGGAGAGGTGGCACACAACTACCCATCAACATTAAAACACCTCGACACCTTTACC
GCAAGCCAGGTAGATGCTTTGTTGACACAACTTGGCGAGCCAGGTGGAGGGCAGCCACCCACCAGAAAACGGCAA
CTCTACATGGCCTTGGGAATTACTGCACGTGTAGTATGA
Gene >OphauB2|1553
ATGGCATCGGAAACAAAACCGCTTGATTCATTTTTAAGTCGTGGCCGTAACAATGAAATTAGCTTGGAGCTTCGT
ACGGCGATTGTGGAAGCTGTAAATTCTGGCCGCAAACAGAGCGATGCGGCCAGAGATTTCAACGTGTCACGCCAG
AGCGTGTCACGCCTCATTCAAAGGCTCAAGGAGAGCGGCTCGGTTGCTCGAAGCAAACGCAGTGGACGGCCGAGA
AAAATTGTCACGGCGAGGCAAACACGGGCGGCTCTTCGCAAAGCGCGTCGCGAATTGAGAGCATCTGCGCAAGCA
TCGGGGCAACAGAAGACCAGCAGTGATTCTTTGGCGGCACCCACAGCAACTGAGGCTGAGCAATTAGGAGATGCT
AATGGTCTACGGACGGGCGTTGATGGTGTGGAAAACTCTGCGACAGAGAGTACAGATGGTCAGGCAAGAGGGGCA
GTGAGTGTAAACGGGGAGCCAATGTCGCAGGCACTCGAGGATTTGAGGTCGGAAATACGATCTGAGATGAGATCT
ATCCGGGCGGGAATGCAGGAAATGGTGTCAAACATCAACACGGTCAACGACAAGGTGGATGCTTTGAACCGCAAG
CTGGCAATCTCGTTAGTTGGTTTGCTCATTTTCCTTTTTTGTCTTTTCGGGTTTGTACGCGTGATGCTAATGCCA
AGATGTAGTGACAGAAACTCAATTGCACGGTTACAAAATAGCATCATTAGCCACGACGGCGTCTATTTAGTGCCA
TTGTATAGCCCCATAACAGGAGAGGTGGCACACAACTACCCATCAACATTAAAACACCTCGACACCTTTACCGGT
ATATTTTGCTTACTCTTCATGGTGATTGCTGCATTACTAACGAAATAATGGGTCGCTAGCAAGCCAGGTAGATGC
TTTGTTGACACAACTTGGCGAGCCAGGTGGAGGGCAGCCACCCACCAGAAAACGGCAACTCTACATGGCCTTGGG
AATTACTGCACGTGTAGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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