© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1515 |
| Gene name | |
| Location | Contig_14:190665..192336 |
| Strand | - |
| Gene length (bp) | 1671 |
| Transcript length (bp) | 1671 |
| Coding sequence length (bp) | 1671 |
| Protein length (aa) | 557 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02176 | zf-TRAF | TRAF-type zinc finger | 8.5E-07 | 305 | 362 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 4.5E-09 | 167 | 205 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 9.5E-09 | 167 | 205 |
| PF15227 | zf-C3HC4_4 | zinc finger of C3HC4-type, RING | 7.5E-08 | 167 | 205 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.7E-07 | 167 | 201 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 3.9E-07 | 164 | 209 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.6E-06 | 167 | 208 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y4K3|TRAF6_HUMAN | TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1 | 162 | 417 | 6.0E-20 |
| sp|Q6DJN2|TRF6B_XENLA | TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b PE=2 SV=1 | 153 | 362 | 9.0E-20 |
| sp|B6CJY4|TRAF6_CERAT | TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2 SV=1 | 153 | 417 | 9.0E-20 |
| sp|B6CJY5|TRAF6_MACMU | TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2 SV=1 | 153 | 417 | 9.0E-20 |
| sp|Q28DL4|TRAF6_XENTR | TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6 PE=2 SV=1 | 162 | 362 | 2.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y4K3|TRAF6_HUMAN | TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1 | 162 | 417 | 6.0E-20 |
| sp|Q6DJN2|TRF6B_XENLA | TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b PE=2 SV=1 | 153 | 362 | 9.0E-20 |
| sp|B6CJY4|TRAF6_CERAT | TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2 SV=1 | 153 | 417 | 9.0E-20 |
| sp|B6CJY5|TRAF6_MACMU | TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2 SV=1 | 153 | 417 | 9.0E-20 |
| sp|Q28DL4|TRAF6_XENTR | TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6 PE=2 SV=1 | 162 | 362 | 2.0E-18 |
| sp|Q3MV19|TRF6A_XENLA | TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a PE=1 SV=1 | 109 | 362 | 6.0E-18 |
| sp|B5DF45|TRAF6_RAT | TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2 SV=1 | 153 | 417 | 2.0E-17 |
| sp|P70196|TRAF6_MOUSE | TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2 | 162 | 362 | 3.0E-17 |
| sp|Q6IWL4|TRAF6_DANRE | TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2 | 153 | 362 | 5.0E-17 |
| sp|Q3ZCC3|TRAF6_BOVIN | TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1 | 162 | 417 | 1.0E-16 |
| sp|O00463|TRAF5_HUMAN | TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2 | 156 | 485 | 1.0E-16 |
| sp|A7XUJ6|TRAF6_PIG | TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1 | 153 | 362 | 2.0E-16 |
| sp|Q60803|TRAF3_MOUSE | TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2 | 131 | 365 | 3.0E-14 |
| sp|Q8N448|LNX2_HUMAN | Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1 | 153 | 258 | 5.0E-14 |
| sp|Q91XL2|LNX2_MOUSE | Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2 | 153 | 258 | 3.0E-13 |
| sp|P70191|TRAF5_MOUSE | TNF receptor-associated factor 5 OS=Mus musculus GN=Traf5 PE=1 SV=1 | 156 | 482 | 5.0E-13 |
| sp|Q13114|TRAF3_HUMAN | TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2 | 153 | 365 | 5.0E-12 |
| sp|Q7ZW16|RNF41_DANRE | E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1 | 157 | 285 | 1.0E-10 |
| sp|Q61382|TRAF4_MOUSE | TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2 | 153 | 367 | 3.0E-10 |
| sp|Q5FWL3|RNF41_XENLA | E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2 SV=1 | 157 | 285 | 9.0E-10 |
| sp|Q86KX6|Y2348_DICDI | TNF receptor-associated factor family protein DDB_G0272348 OS=Dictyostelium discoideum GN=DDB_G0272348 PE=3 SV=2 | 166 | 362 | 2.0E-09 |
| sp|Q8BH75|RNF41_MOUSE | E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1 SV=1 | 157 | 285 | 3.0E-09 |
| sp|Q9H4P4|RNF41_HUMAN | E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2 | 157 | 285 | 3.0E-09 |
| sp|Q5R7T5|RNF41_PONAB | E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2 SV=1 | 157 | 285 | 3.0E-09 |
| sp|Q2KHN1|RN151_HUMAN | RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1 | 145 | 305 | 1.0E-08 |
| sp|Q54FC5|Y0965_DICDI | TNF receptor-associated factor family protein DDB_G0290965 OS=Dictyostelium discoideum GN=DDB_G0290965 PE=3 SV=1 | 240 | 451 | 2.0E-08 |
| sp|Q8TBB1|LNX1_HUMAN | E3 ubiquitin-protein ligase LNX OS=Homo sapiens GN=LNX1 PE=1 SV=1 | 148 | 258 | 2.0E-08 |
| sp|Q86L54|Y2829_DICDI | TNF receptor-associated factor family protein DDB_G0272829 OS=Dictyostelium discoideum GN=DDB_G0272829 PE=3 SV=1 | 164 | 345 | 5.0E-08 |
| sp|P11467|DG17_DICDI | RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2 SV=2 | 240 | 428 | 7.0E-08 |
| sp|Q54FD5|Y0931_DICDI | TNF receptor-associated factor family protein DDB_G0290931 OS=Dictyostelium discoideum GN=DDB_G0290931 PE=3 SV=1 | 240 | 362 | 1.0E-07 |
| sp|Q54FG0|Y0883_DICDI | TNF receptor-associated factor family protein DDB_G0290883 OS=Dictyostelium discoideum GN=DDB_G0290883 PE=3 SV=1 | 240 | 428 | 2.0E-07 |
| sp|O70263|LNX1_MOUSE | E3 ubiquitin-protein ligase LNX OS=Mus musculus GN=Lnx1 PE=1 SV=1 | 153 | 258 | 3.0E-07 |
| sp|Q1ZXR0|Y8444_DICDI | TNF receptor-associated factor family protein DDB_G0268444 OS=Dictyostelium discoideum GN=DDB_G0268444 PE=2 SV=1 | 150 | 350 | 5.0E-07 |
| sp|P68907|PZRN3_RAT | E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3 PE=1 SV=1 | 157 | 272 | 7.0E-07 |
| sp|Q2TBT8|RN151_BOVIN | RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1 | 150 | 243 | 7.0E-07 |
| sp|Q9BUZ4|TRAF4_HUMAN | TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1 | 153 | 362 | 9.0E-07 |
| sp|Q55GA8|Y7744_DICDI | TNF receptor-associated factor family protein DDB_G0267744 OS=Dictyostelium discoideum GN=DDB_G0267744 PE=3 SV=1 | 158 | 362 | 1.0E-06 |
| sp|Q9UPQ7|PZRN3_HUMAN | E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2 | 157 | 272 | 1.0E-06 |
| sp|Q69ZS0|PZRN3_MOUSE | E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1 SV=3 | 157 | 272 | 1.0E-06 |
| sp|Q54NN4|Y8514_DICDI | TNF receptor-associated factor family protein DDB_G0285149 OS=Dictyostelium discoideum GN=DDB_G0285149 PE=3 SV=1 | 167 | 362 | 2.0E-06 |
| sp|Q9CQ29|RN151_MOUSE | RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1 | 150 | 241 | 3.0E-06 |
| sp|Q557K0|Y3509_DICDI | TNF receptor-associated factor family protein DDB_G0273433/DDB_G0273509 OS=Dictyostelium discoideum GN=DDB_G0273433 PE=3 SV=1 | 167 | 362 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1515 MAAAPPRSGGNGLAIRPASAAAMSRESASESSDEGLRLSPAAARRFARRNMRRAATPDLVTSLVRPPSPDAFYVA PETHGRLLRQRLIPAATTAAPGHVPSLRRRSVFATAASSSTLLSWSSSDRRSGPLLQPHASSLDVPLRHGGGALF DMYMLSYVAEPDSNLLCPICHDPLVDPVTTPCDHTFCYRCIRRSIASSPSGTACPIDREVLSWFDCFSAGRLIRT QLNALVVKCPYHARGCTVEMRRENIERHATIECSYREFACLDAECGKKIRFKPKHNLCPHQHVNCSHCGDSVEEA EMDRHLLLCSRTKTRCPGCWLLIMRSEMAAHRELECDGVEASCPYNDVGCPVRAMRGEMSSHSFSCPFHPDSPSG MLIRTQREIIHNIGDLEGQIRDLTARHDESTRRIDHLAAEIRRRDGHCPARAASSLDNEAMMSESRTMQDLDAGF EEVHQNLTHLEARQSMWTLNQVMPIREEVTELRNNINMVRMHVNWLLNRSREEGRIRAAAINAAAASPSSSSSSP AMRRDSSTDATVAPIAQRRRSSGPETDAPRL* |
| Coding | >OphauB2|1515 ATGGCGGCAGCGCCTCCCAGGAGCGGCGGAAACGGGCTGGCCATTCGCCCTGCCAGCGCCGCTGCTATGTCTCGG GAATCTGCCTCGGAATCAAGCGACGAAGGCCTGCGGCTAAGCCCTGCCGCGGCTCGACGCTTCGCACGCCGCAAC ATGCGTCGTGCTGCCACTCCCGATCTTGTCACCAGCCTGGTTCGACCTCCGTCCCCAGATGCTTTTTACGTGGCT CCAGAAACACACGGCCGGCTGTTGCGCCAACGCCTCATTCCAGCTGCAACCACTGCCGCTCCTGGCCATGTCCCC AGCTTGCGCCGACGCTCTGTTTTTGCTACGGCTGCCTCATCATCAACCCTTCTGTCGTGGTCTTCATCTGACCGC CGTTCGGGCCCGCTCTTGCAACCACATGCCTCGTCACTTGATGTCCCCTTGCGCCATGGTGGCGGTGCTCTCTTC GACATGTACATGCTGTCCTATGTGGCTGAGCCCGACTCCAACTTGCTCTGTCCCATCTGTCACGATCCTCTAGTC GACCCAGTCACGACGCCATGTGACCACACCTTTTGCTACCGGTGCATACGCCGCAGCATTGCCTCGAGTCCATCG GGCACAGCTTGTCCCATTGACCGAGAAGTCCTCTCGTGGTTTGACTGTTTCAGCGCAGGCCGTCTGATTCGCACC CAGCTCAATGCCCTCGTGGTCAAGTGTCCTTACCACGCCCGCGGTTGCACTGTCGAGATGCGACGCGAGAACATT GAACGACATGCTACTATAGAGTGCAGCTACCGCGAGTTTGCCTGCCTGGATGCCGAGTGCGGGAAGAAAATACGA TTCAAACCAAAGCACAACCTCTGCCCCCATCAACACGTCAACTGCTCGCACTGTGGCGACAGCGTTGAGGAGGCT GAAATGGACAGACATCTCCTCTTATGCTCGCGTACCAAGACGCGCTGCCCCGGCTGCTGGCTCCTCATCATGCGC TCTGAGATGGCTGCACACCGCGAGCTTGAATGCGACGGTGTCGAGGCTTCGTGCCCATATAACGATGTTGGCTGC CCCGTGCGTGCCATGCGCGGCGAGATGAGCTCTCATTCTTTCTCATGTCCCTTTCATCCCGACTCGCCTTCGGGC ATGCTCATTCGAACACAGCGTGAGATTATTCACAACATTGGAGACCTCGAGGGACAAATACGTGATTTGACGGCG CGGCACGACGAGTCAACGCGCCGCATTGACCATCTTGCCGCCGAGATCCGCCGTAGAGATGGCCATTGTCCCGCA AGAGCAGCTAGTTCGCTCGACAACGAGGCCATGATGAGCGAAAGCCGCACTATGCAAGATCTTGACGCTGGGTTT GAGGAGGTTCATCAAAACTTGACGCATCTAGAGGCTCGGCAGAGCATGTGGACTCTGAACCAGGTGATGCCCATA CGAGAAGAAGTGACGGAGCTGCGCAATAATATCAACATGGTTCGGATGCATGTCAACTGGCTCCTCAACCGCAGC CGCGAGGAGGGGCGCATTCGCGCAGCCGCAATCAATGCAGCGGCTGCGTCGCCGTCGTCGTCGTCGTCGTCGCCA GCCATGAGGCGCGACAGTTCAACGGATGCCACGGTGGCGCCTATAGCCCAGCGAAGGCGCTCGTCAGGACCTGAA ACCGACGCACCGCGTCTATGA |
| Transcript | >OphauB2|1515 ATGGCGGCAGCGCCTCCCAGGAGCGGCGGAAACGGGCTGGCCATTCGCCCTGCCAGCGCCGCTGCTATGTCTCGG GAATCTGCCTCGGAATCAAGCGACGAAGGCCTGCGGCTAAGCCCTGCCGCGGCTCGACGCTTCGCACGCCGCAAC ATGCGTCGTGCTGCCACTCCCGATCTTGTCACCAGCCTGGTTCGACCTCCGTCCCCAGATGCTTTTTACGTGGCT CCAGAAACACACGGCCGGCTGTTGCGCCAACGCCTCATTCCAGCTGCAACCACTGCCGCTCCTGGCCATGTCCCC AGCTTGCGCCGACGCTCTGTTTTTGCTACGGCTGCCTCATCATCAACCCTTCTGTCGTGGTCTTCATCTGACCGC CGTTCGGGCCCGCTCTTGCAACCACATGCCTCGTCACTTGATGTCCCCTTGCGCCATGGTGGCGGTGCTCTCTTC GACATGTACATGCTGTCCTATGTGGCTGAGCCCGACTCCAACTTGCTCTGTCCCATCTGTCACGATCCTCTAGTC GACCCAGTCACGACGCCATGTGACCACACCTTTTGCTACCGGTGCATACGCCGCAGCATTGCCTCGAGTCCATCG GGCACAGCTTGTCCCATTGACCGAGAAGTCCTCTCGTGGTTTGACTGTTTCAGCGCAGGCCGTCTGATTCGCACC CAGCTCAATGCCCTCGTGGTCAAGTGTCCTTACCACGCCCGCGGTTGCACTGTCGAGATGCGACGCGAGAACATT GAACGACATGCTACTATAGAGTGCAGCTACCGCGAGTTTGCCTGCCTGGATGCCGAGTGCGGGAAGAAAATACGA TTCAAACCAAAGCACAACCTCTGCCCCCATCAACACGTCAACTGCTCGCACTGTGGCGACAGCGTTGAGGAGGCT GAAATGGACAGACATCTCCTCTTATGCTCGCGTACCAAGACGCGCTGCCCCGGCTGCTGGCTCCTCATCATGCGC TCTGAGATGGCTGCACACCGCGAGCTTGAATGCGACGGTGTCGAGGCTTCGTGCCCATATAACGATGTTGGCTGC CCCGTGCGTGCCATGCGCGGCGAGATGAGCTCTCATTCTTTCTCATGTCCCTTTCATCCCGACTCGCCTTCGGGC ATGCTCATTCGAACACAGCGTGAGATTATTCACAACATTGGAGACCTCGAGGGACAAATACGTGATTTGACGGCG CGGCACGACGAGTCAACGCGCCGCATTGACCATCTTGCCGCCGAGATCCGCCGTAGAGATGGCCATTGTCCCGCA AGAGCAGCTAGTTCGCTCGACAACGAGGCCATGATGAGCGAAAGCCGCACTATGCAAGATCTTGACGCTGGGTTT GAGGAGGTTCATCAAAACTTGACGCATCTAGAGGCTCGGCAGAGCATGTGGACTCTGAACCAGGTGATGCCCATA CGAGAAGAAGTGACGGAGCTGCGCAATAATATCAACATGGTTCGGATGCATGTCAACTGGCTCCTCAACCGCAGC CGCGAGGAGGGGCGCATTCGCGCAGCCGCAATCAATGCAGCGGCTGCGTCGCCGTCGTCGTCGTCGTCGTCGCCA GCCATGAGGCGCGACAGTTCAACGGATGCCACGGTGGCGCCTATAGCCCAGCGAAGGCGCTCGTCAGGACCTGAA ACCGACGCACCGCGTCTATGA |
| Gene | >OphauB2|1515 ATGGCGGCAGCGCCTCCCAGGAGCGGCGGAAACGGGCTGGCCATTCGCCCTGCCAGCGCCGCTGCTATGTCTCGG GAATCTGCCTCGGAATCAAGCGACGAAGGCCTGCGGCTAAGCCCTGCCGCGGCTCGACGCTTCGCACGCCGCAAC ATGCGTCGTGCTGCCACTCCCGATCTTGTCACCAGCCTGGTTCGACCTCCGTCCCCAGATGCTTTTTACGTGGCT CCAGAAACACACGGCCGGCTGTTGCGCCAACGCCTCATTCCAGCTGCAACCACTGCCGCTCCTGGCCATGTCCCC AGCTTGCGCCGACGCTCTGTTTTTGCTACGGCTGCCTCATCATCAACCCTTCTGTCGTGGTCTTCATCTGACCGC CGTTCGGGCCCGCTCTTGCAACCACATGCCTCGTCACTTGATGTCCCCTTGCGCCATGGTGGCGGTGCTCTCTTC GACATGTACATGCTGTCCTATGTGGCTGAGCCCGACTCCAACTTGCTCTGTCCCATCTGTCACGATCCTCTAGTC GACCCAGTCACGACGCCATGTGACCACACCTTTTGCTACCGGTGCATACGCCGCAGCATTGCCTCGAGTCCATCG GGCACAGCTTGTCCCATTGACCGAGAAGTCCTCTCGTGGTTTGACTGTTTCAGCGCAGGCCGTCTGATTCGCACC CAGCTCAATGCCCTCGTGGTCAAGTGTCCTTACCACGCCCGCGGTTGCACTGTCGAGATGCGACGCGAGAACATT GAACGACATGCTACTATAGAGTGCAGCTACCGCGAGTTTGCCTGCCTGGATGCCGAGTGCGGGAAGAAAATACGA TTCAAACCAAAGCACAACCTCTGCCCCCATCAACACGTCAACTGCTCGCACTGTGGCGACAGCGTTGAGGAGGCT GAAATGGACAGACATCTCCTCTTATGCTCGCGTACCAAGACGCGCTGCCCCGGCTGCTGGCTCCTCATCATGCGC TCTGAGATGGCTGCACACCGCGAGCTTGAATGCGACGGTGTCGAGGCTTCGTGCCCATATAACGATGTTGGCTGC CCCGTGCGTGCCATGCGCGGCGAGATGAGCTCTCATTCTTTCTCATGTCCCTTTCATCCCGACTCGCCTTCGGGC ATGCTCATTCGAACACAGCGTGAGATTATTCACAACATTGGAGACCTCGAGGGACAAATACGTGATTTGACGGCG CGGCACGACGAGTCAACGCGCCGCATTGACCATCTTGCCGCCGAGATCCGCCGTAGAGATGGCCATTGTCCCGCA AGAGCAGCTAGTTCGCTCGACAACGAGGCCATGATGAGCGAAAGCCGCACTATGCAAGATCTTGACGCTGGGTTT GAGGAGGTTCATCAAAACTTGACGCATCTAGAGGCTCGGCAGAGCATGTGGACTCTGAACCAGGTGATGCCCATA CGAGAAGAAGTGACGGAGCTGCGCAATAATATCAACATGGTTCGGATGCATGTCAACTGGCTCCTCAACCGCAGC CGCGAGGAGGGGCGCATTCGCGCAGCCGCAATCAATGCAGCGGCTGCGTCGCCGTCGTCGTCGTCGTCGTCGCCA GCCATGAGGCGCGACAGTTCAACGGATGCCACGGTGGCGCCTATAGCCCAGCGAAGGCGCTCGTCAGGACCTGAA ACCGACGCACCGCGTCTATGA |