© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1421 |
| Gene name | |
| Location | Contig_138:13275..14953 |
| Strand | + |
| Gene length (bp) | 1678 |
| Transcript length (bp) | 1497 |
| Coding sequence length (bp) | 1497 |
| Protein length (aa) | 499 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04104 | DNA_primase_lrg | Eukaryotic and archaeal DNA primase, large subunit | 2.7E-84 | 195 | 479 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8NIZ4|PRI2_NEUCR | Probable DNA primase large subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=5F3.150 PE=3 SV=1 | 1 | 498 | 0.0E+00 |
| sp|O74761|PRI2_SCHPO | DNA primase large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri2 PE=1 SV=1 | 1 | 482 | 6.0E-148 |
| sp|P20457|PRI2_YEAST | DNA primase large subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI2 PE=1 SV=1 | 34 | 482 | 3.0E-100 |
| sp|Q84WJ2|PRI2_ARATH | Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2 | 38 | 482 | 5.0E-88 |
| sp|P33610|PRI2_MOUSE | DNA primase large subunit OS=Mus musculus GN=Prim2 PE=1 SV=1 | 20 | 497 | 3.0E-82 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8NIZ4|PRI2_NEUCR | Probable DNA primase large subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=5F3.150 PE=3 SV=1 | 1 | 498 | 0.0E+00 |
| sp|O74761|PRI2_SCHPO | DNA primase large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri2 PE=1 SV=1 | 1 | 482 | 6.0E-148 |
| sp|P20457|PRI2_YEAST | DNA primase large subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI2 PE=1 SV=1 | 34 | 482 | 3.0E-100 |
| sp|Q84WJ2|PRI2_ARATH | Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2 | 38 | 482 | 5.0E-88 |
| sp|P33610|PRI2_MOUSE | DNA primase large subunit OS=Mus musculus GN=Prim2 PE=1 SV=1 | 20 | 497 | 3.0E-82 |
| sp|O89044|PRI2_RAT | DNA primase large subunit OS=Rattus norvegicus GN=Prim2 PE=2 SV=1 | 20 | 498 | 4.0E-80 |
| sp|P49643|PRI2_HUMAN | DNA primase large subunit OS=Homo sapiens GN=PRIM2 PE=1 SV=2 | 20 | 497 | 4.0E-80 |
| sp|Q9VPH2|PRI2_DROME | DNA primase large subunit OS=Drosophila melanogaster GN=DNApol-alpha60 PE=1 SV=2 | 31 | 484 | 6.0E-56 |
| sp|O02334|PRI2_CAEEL | DNA primase large subunit OS=Caenorhabditis elegans GN=pri-2 PE=3 SV=2 | 6 | 482 | 6.0E-50 |
| sp|Q55BM5|PRI2_DICDI | DNA primase large subunit OS=Dictyostelium discoideum GN=prim2 PE=3 SV=1 | 41 | 495 | 1.0E-40 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006269 | DNA replication, synthesis of RNA primer | Yes |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1421 MLRHDSNRIDPKRRNVIDHRKKQFASPQYKETDYPHRLNYYTDAPTAEITLEQFEQWAIDRLRVLGEIEACSFRN RTPTETALHMKPILDKYLPLDTNSSASSNLFSQRQKDHYSHFILRLAFSMTDDLRRRFTRVETMLFRMRFANDDL AERSAFVQSLNLGWCEAVPEAERQSLALELMALSSKKGSYDQDAWFKVDWERVPDLVEQRRVLLKFGKAYVPERE QSSMVVAEFAARLEKQLGLTARALPRLDEDDRLTPILNHLSKNFITPDSAYMSDSAPAGAQPSAANIDQLSQHFP ACMKHLHQTLRRDAHLKHYGRLQYTLFLKGIGLNLEECLVFWRSSFSKITDDTFNKEYRYNVRHSYGDVGGDANR RGGGYSPMSCQKILTEHPPGPGEAHGCPYRHFDMENLTTLLGSMGVTDRAVLQGVKEDKDSQKFHMACNRVFEHL HKAEIKTAKDQGVMTTNQLETIVHPNEYYKRSYLLKTLDTKEDVKAEG* |
| Coding | >OphauB2|1421 ATGTTGCGGCACGACTCTAACCGCATCGACCCCAAGCGGCGCAACGTCATTGACCACCGCAAGAAGCAGTTTGCC TCTCCCCAGTACAAAGAGACAGATTATCCCCACCGCCTCAACTACTACACGGATGCGCCAACGGCCGAAATCACG CTCGAGCAGTTTGAGCAATGGGCCATTGACAGGCTGAGAGTTCTCGGCGAAATCGAAGCCTGTTCTTTTCGCAAC AGGACGCCAACTGAAACCGCCCTTCACATGAAGCCCATACTCGACAAATACCTGCCCCTCGACACCAACAGCTCG GCCTCTTCAAACTTGTTTTCCCAGCGGCAAAAGGATCACTATAGTCACTTTATTCTGCGGCTGGCCTTTTCCATG ACGGACGACTTGCGCCGACGCTTTACCCGCGTCGAGACGATGCTTTTCCGCATGCGCTTTGCCAATGACGATCTT GCCGAGCGCTCTGCATTTGTCCAAAGCTTGAATCTGGGCTGGTGCGAGGCTGTCCCCGAGGCCGAGAGACAGTCG CTGGCTCTAGAGCTCATGGCCCTGTCCTCCAAAAAGGGCAGCTATGACCAAGACGCTTGGTTCAAGGTGGATTGG GAAAGGGTTCCGGATCTCGTTGAGCAGCGTCGTGTCTTGCTCAAGTTTGGCAAGGCCTATGTACCCGAACGCGAG CAGTCAAGCATGGTGGTGGCAGAGTTTGCTGCGCGGCTCGAGAAGCAGCTCGGGCTTACGGCGCGCGCACTTCCA CGCCTCGACGAGGACGACCGCCTGACTCCCATTCTTAACCACTTGTCCAAAAACTTTATTACGCCCGACTCGGCC TACATGTCCGACTCGGCGCCCGCTGGTGCTCAGCCGTCAGCCGCAAACATTGACCAATTGTCCCAACACTTCCCA GCCTGTATGAAGCATTTGCATCAGACGCTGCGGCGCGATGCCCATCTCAAGCATTATGGGCGTCTGCAGTACACC CTCTTCCTCAAGGGAATCGGGCTCAACCTCGAAGAGTGTCTTGTATTCTGGCGGAGTAGCTTTTCAAAAATTACC GACGACACCTTCAACAAGGAGTACCGCTACAATGTTCGTCACAGCTACGGCGACGTGGGTGGCGACGCAAACCGC AGAGGCGGCGGCTACAGCCCCATGAGCTGCCAAAAGATCTTGACGGAGCATCCGCCAGGTCCGGGAGAGGCCCAC GGATGTCCATACCGCCACTTTGACATGGAAAATCTGACGACGCTTCTTGGCTCCATGGGCGTGACGGACCGCGCA GTCCTGCAGGGAGTCAAGGAAGACAAGGACAGCCAAAAATTCCACATGGCATGCAACAGAGTCTTTGAGCATCTG CACAAGGCCGAAATTAAAACGGCCAAGGACCAAGGTGTAATGACGACTAATCAGCTCGAGACTATTGTCCATCCC AACGAGTACTACAAGCGGAGTTATCTGCTCAAAACCCTTGACACTAAAGAGGACGTCAAGGCCGAGGGATAA |
| Transcript | >OphauB2|1421 ATGTTGCGGCACGACTCTAACCGCATCGACCCCAAGCGGCGCAACGTCATTGACCACCGCAAGAAGCAGTTTGCC TCTCCCCAGTACAAAGAGACAGATTATCCCCACCGCCTCAACTACTACACGGATGCGCCAACGGCCGAAATCACG CTCGAGCAGTTTGAGCAATGGGCCATTGACAGGCTGAGAGTTCTCGGCGAAATCGAAGCCTGTTCTTTTCGCAAC AGGACGCCAACTGAAACCGCCCTTCACATGAAGCCCATACTCGACAAATACCTGCCCCTCGACACCAACAGCTCG GCCTCTTCAAACTTGTTTTCCCAGCGGCAAAAGGATCACTATAGTCACTTTATTCTGCGGCTGGCCTTTTCCATG ACGGACGACTTGCGCCGACGCTTTACCCGCGTCGAGACGATGCTTTTCCGCATGCGCTTTGCCAATGACGATCTT GCCGAGCGCTCTGCATTTGTCCAAAGCTTGAATCTGGGCTGGTGCGAGGCTGTCCCCGAGGCCGAGAGACAGTCG CTGGCTCTAGAGCTCATGGCCCTGTCCTCCAAAAAGGGCAGCTATGACCAAGACGCTTGGTTCAAGGTGGATTGG GAAAGGGTTCCGGATCTCGTTGAGCAGCGTCGTGTCTTGCTCAAGTTTGGCAAGGCCTATGTACCCGAACGCGAG CAGTCAAGCATGGTGGTGGCAGAGTTTGCTGCGCGGCTCGAGAAGCAGCTCGGGCTTACGGCGCGCGCACTTCCA CGCCTCGACGAGGACGACCGCCTGACTCCCATTCTTAACCACTTGTCCAAAAACTTTATTACGCCCGACTCGGCC TACATGTCCGACTCGGCGCCCGCTGGTGCTCAGCCGTCAGCCGCAAACATTGACCAATTGTCCCAACACTTCCCA GCCTGTATGAAGCATTTGCATCAGACGCTGCGGCGCGATGCCCATCTCAAGCATTATGGGCGTCTGCAGTACACC CTCTTCCTCAAGGGAATCGGGCTCAACCTCGAAGAGTGTCTTGTATTCTGGCGGAGTAGCTTTTCAAAAATTACC GACGACACCTTCAACAAGGAGTACCGCTACAATGTTCGTCACAGCTACGGCGACGTGGGTGGCGACGCAAACCGC AGAGGCGGCGGCTACAGCCCCATGAGCTGCCAAAAGATCTTGACGGAGCATCCGCCAGGTCCGGGAGAGGCCCAC GGATGTCCATACCGCCACTTTGACATGGAAAATCTGACGACGCTTCTTGGCTCCATGGGCGTGACGGACCGCGCA GTCCTGCAGGGAGTCAAGGAAGACAAGGACAGCCAAAAATTCCACATGGCATGCAACAGAGTCTTTGAGCATCTG CACAAGGCCGAAATTAAAACGGCCAAGGACCAAGGTGTAATGACGACTAATCAGCTCGAGACTATTGTCCATCCC AACGAGTACTACAAGCGGAGTTATCTGCTCAAAACCCTTGACACTAAAGAGGACGTCAAGGCCGAGGGATAA |
| Gene | >OphauB2|1421 ATGTTGCGGCACGACTCTAACCGCATCGACCCCAAGCGGCGCAACGTCATTGACCACCGCAAGAAGCAGTTTGCC TCTCCCCAGTACAAAGAGACAGATTATCCCCACCGCCTCAACTACTACACGGATGCGCCAACGGCCGAAATCACG CTCGAGCAGTTTGAGCAATGGGCCATTGACAGGCTGAGAGGTTTGCTTTTAGCCCCTCTGTGTCTGTGCAATGCT GACTCTGCCGCCAGTTCTCGGCGAAATCGAAGCCTGTTCTTTTCGCAACAGGACGCCAACTGAAACCGCCCTTCA CATGAAGCCCATACTCGACAAATACCTGCCCCTCGACACCAACAGCTCGGCCTCTTCAAACTTGTTTTCCCAGCG GCAAAAGGATCACTATAGTCACTTTATTCTGCGGCTGGCCTTTTCCATGACGGACGACTTGCGCCGACGCTTTAC CCGCGTCGAGACGATGCTTTTCCGCATGCGCTTTGCCAATGACGATCTTGCCGAGCGCTCTGCATTTGTCCAAAG CTTGAATCTGGGCTGGTGCGAGGCTGTCCCCGAGGCCGAGAGACAGTCGCTGGCTCTAGAGCTCATGGCCCTGTC CTCCAAAAAGGGCAGCTATGACCAAGACGCTTGGTTCAAGGTGGATTGGGAAAGGGTTCCGGATCTCGTTGAGCA GCGTCGTGTCTTGCTCAAGTTTGGCAAGGCCTATGTACCCGAACGCGAGCAGTCAAGCATGGTGGTGGCAGAGTT TGCTGCGCGGCTCGAGAAGCAGCTCGGGGTGAGTAGACGAGTGTTGCAGTGTCGAGAACAAGGCTGATGCATCGT CCACACGGCACAGCTTACGGCGCGCGCACTTCCACGCCTCGACGAGGACGACCGCCTGACTCCCATTCTTAACCA CTTGTCCAAAAACTTTATTACGCCCGACTCGGCCTACATGTCCGACTCGGCGCCCGCTGGTGCTCAGCCGTCAGC CGCAAACATTGACCAATTGTCCCAACACTTCCCAGCCTGTATGAAGCATTTGCATCAGACGCTGCGGCGCGATGC CCATCTCAAGCATTATGGGCGTCTGCAGTACACCCTCTTCCTCAAGGGAATCGGGCTCAACCTCGAAGAGTGTCT TGTATTCTGGCGGAGTAGCTTTTCAAAAATTACCGACGACACCTTCAACAAGGAGTACCGCTACAATGTTCGTCA CAGCTACGGCGACGTGGGTGGCGACGCAAACCGCAGAGGCGGCGGCTACAGCCCCATGAGCTGCCAAAAGATCTT GACGGAGCATCCGCCAGGTCCGGGAGAGGCCCACGGATGTCCATACCGCCACTTTGACATGGAAAATCTGACGAC GCTTCTTGGCTCCATGGGCGTGACGGACCGCGCAGTCCTGCAGGGAGTCAAGGAAGACAAGGACAGCCAAAAATT CCACATGGCATGCAACAGGCAAGTCGTCTCGCCCAAGACTGCTATTGAATTTGACTCTTTGCTAACTCTTTTCTT TTTGTCCGAGAGCAGAGTCTTTGAGCATCTGCACAAGGCCGAAATTAAAACGGCCAAGGACCAAGGTGTAATGAC GACTAATCAGCTCGAGACTATTGTCCATCCCAACGAGTACTACAAGCGGAGTTATCTGCTCAAAACCCTTGACAC TAAAGAGGACGTCAAGGCCGAGGGATAA |