Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1293
Gene name
LocationContig_130:41762..42850
Strand+
Gene length (bp)1088
Transcript length (bp)960
Coding sequence length (bp)960
Protein length (aa) 320

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 1.3E-13 263 315
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain 7.9E-09 1 23

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 318 4.0E-83
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 318 6.0E-56
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 302 2.0E-54
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 302 4.0E-54
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 302 2.0E-53
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 318 4.0E-83
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 318 6.0E-56
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 302 2.0E-54
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 302 4.0E-54
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 302 2.0E-53
sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 5 302 4.0E-53
sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 3 303 1.0E-50
sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 4 316 5.0E-49
sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 4 316 5.0E-41
sp|Q20797|STX5_CAEEL Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 7 302 2.0E-37
sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 62 299 1.0E-07
sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 62 299 2.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

Domain # Start End Length
1 298 317 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1293
MAIASVQDRTAEFRSVLDQARRRQHSAKVGSQRRSLLNDAQKAAAQGDAQPRRSDFARKAAEIGRGISATMGKLE
KLAQLAKRRTLFDDRPVEINELTFVIKQDLSSLNQQIGALQSLSRQQHPKADQEGEHNKNVVYLLQGKLTDVSVN
FKDVLEARTKNIQASRSRTENFISTVSQHAQPTLTQTASPLYGTPTRSSPAPGADTLSLNPVGDQQLVVMEEAQP
TNMYIQERGQAIEAIEKTIGELGSIFGQLATMVTEQTDMIQRIDANTEDVVDNVEGAQRELFKYWSRVSSNRWLI
AKMFGVLMIFFLLWVLVSG*
Coding >OphauB2|1293
ATGGCTATTGCGTCTGTCCAGGATCGCACCGCCGAGTTCCGGTCGGTCCTGGACCAAGCCAGACGCCGGCAACAC
TCGGCAAAGGTTGGGTCGCAGCGGCGGTCGCTCCTCAACGATGCTCAAAAGGCTGCTGCTCAGGGCGACGCCCAG
CCCCGCCGGTCCGATTTCGCGCGCAAGGCTGCCGAGATTGGGCGCGGCATATCAGCCACCATGGGCAAGCTTGAA
AAGCTAGCACAGCTTGCCAAACGACGCACGCTGTTTGACGATCGGCCGGTGGAAATAAACGAACTCACCTTTGTC
ATCAAACAAGACCTCTCCTCCCTAAACCAACAGATTGGCGCCCTTCAATCCCTCTCGCGGCAACAGCATCCCAAG
GCCGACCAAGAGGGCGAACACAACAAAAACGTGGTTTACCTGCTGCAAGGAAAGCTGACGGATGTCTCTGTCAAC
TTCAAGGATGTTCTCGAGGCCCGGACCAAGAACATTCAGGCCTCTCGCTCTCGGACAGAAAATTTCATCTCTACC
GTGTCGCAGCATGCCCAGCCAACTCTCACACAGACTGCATCGCCTCTCTATGGCACACCCACTCGCTCGTCCCCC
GCGCCTGGAGCTGATACCCTTTCTCTCAACCCCGTGGGCGACCAACAGCTCGTCGTCATGGAGGAGGCACAGCCG
ACCAATATGTACATTCAAGAGAGAGGCCAGGCCATTGAAGCCATTGAAAAGACTATTGGAGAACTTGGCAGCATC
TTTGGCCAGCTGGCAACCATGGTGACGGAGCAGACTGACATGATTCAACGCATAGATGCCAATACCGAAGACGTG
GTGGACAATGTCGAAGGCGCTCAACGGGAATTATTTAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCATT
GCCAAGATGTTTGGAGTATTGATGATTTTCTTTTTGCTCTGGGTTCTCGTGTCTGGCTGA
Transcript >OphauB2|1293
ATGGCTATTGCGTCTGTCCAGGATCGCACCGCCGAGTTCCGGTCGGTCCTGGACCAAGCCAGACGCCGGCAACAC
TCGGCAAAGGTTGGGTCGCAGCGGCGGTCGCTCCTCAACGATGCTCAAAAGGCTGCTGCTCAGGGCGACGCCCAG
CCCCGCCGGTCCGATTTCGCGCGCAAGGCTGCCGAGATTGGGCGCGGCATATCAGCCACCATGGGCAAGCTTGAA
AAGCTAGCACAGCTTGCCAAACGACGCACGCTGTTTGACGATCGGCCGGTGGAAATAAACGAACTCACCTTTGTC
ATCAAACAAGACCTCTCCTCCCTAAACCAACAGATTGGCGCCCTTCAATCCCTCTCGCGGCAACAGCATCCCAAG
GCCGACCAAGAGGGCGAACACAACAAAAACGTGGTTTACCTGCTGCAAGGAAAGCTGACGGATGTCTCTGTCAAC
TTCAAGGATGTTCTCGAGGCCCGGACCAAGAACATTCAGGCCTCTCGCTCTCGGACAGAAAATTTCATCTCTACC
GTGTCGCAGCATGCCCAGCCAACTCTCACACAGACTGCATCGCCTCTCTATGGCACACCCACTCGCTCGTCCCCC
GCGCCTGGAGCTGATACCCTTTCTCTCAACCCCGTGGGCGACCAACAGCTCGTCGTCATGGAGGAGGCACAGCCG
ACCAATATGTACATTCAAGAGAGAGGCCAGGCCATTGAAGCCATTGAAAAGACTATTGGAGAACTTGGCAGCATC
TTTGGCCAGCTGGCAACCATGGTGACGGAGCAGACTGACATGATTCAACGCATAGATGCCAATACCGAAGACGTG
GTGGACAATGTCGAAGGCGCTCAACGGGAATTATTTAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCATT
GCCAAGATGTTTGGAGTATTGATGATTTTCTTTTTGCTCTGGGTTCTCGTGTCTGGCTGA
Gene >OphauB2|1293
ATGGCTATTGCGTCTGTCCAGGATCGCACCGCCGAGTTCCGGTCGGTCCTGGACCAAGCCAGACGCCGGCAACAC
TCGGCAAAGGTTGGGTCGCAGCGGCGGTCGCTCCTCAACGATGCTCAAAAGGCTGCTGCTCAGGGCGACGCCCAG
CCCCGCCGGTCCGATTTCGCGCGCAAGGCTGCCGAGATTGGGCGCGGCATATCAGCCACCATGGGCAAGCTTGAA
AAGCTAGCACAGCGTAAGTCTTTTGACGCACCATTTTTGCGCCGCGAGTTGCCGGCTAATATCTCGCAATCTTGC
CATAGTTGCCAAACGACGCACGCTGTTTGACGATCGGCCGGTGGAAATAAACGAACTCACCTTTGTCATCAAACA
AGACCTCTCCTCCCTAAACCAACAGATTGGCGCCCTTCAATCCCTCTCGCGGCAACAGCATCCCAAGGCCGACCA
AGAGGGCGAACACAACAAAAACGTGGTTTACCTGCTGCAAGGAAAGCTGACGGATGTCTCTGTCAACTTCAAGGA
TGTTCTCGAGGCCCGGACCAAGAACATTCAGGCCTCTCGCTCTCGGACAGAAAATTTCATCTCTACCGTGTCGCA
GCATGCCCAGCCAACTCTCACACAGACTGCATCGCCTCTCTATGGCACACCCACTCGCTCGTCCCCCGCGCCTGG
AGCTGATACCCTTTCTCTCAACCCCGTGGGCGACCAACAGCTCGTCGTCATGGAGGAGGCACAGCCGACCAATAT
GTACATTCAAGAGAGAGGCCAGGCCATTGAAGCCATTGAAAAGACTATTGGAGAACTTGGCAGCATCTTTGGCCA
GCTGGCAACCATGGTGACGGAGCAGACTGACATGATTCAACGCATAGATGCCAATACCGAAGACGTGGTGGACAA
TGTCGAAGGCGCTCAACGGGAATTATTTAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCATTGCCAAGAT
GTTTGGAGTATTGATGATTTTCTTTTTGTGAGTCTATCCCCCATATTCTCTACTCCTCTAGCTACGCTCACACTC
TCTTCTTGTGCAGGCTCTGGGTTCTCGTGTCTGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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