© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1171 |
| Gene name | |
| Location | Contig_129:26354..27756 |
| Strand | - |
| Gene length (bp) | 1402 |
| Transcript length (bp) | 1041 |
| Coding sequence length (bp) | 1041 |
| Protein length (aa) | 347 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02453 | Reticulon | Reticulon | 6.6E-32 | 79 | 236 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53694|RTN1_SCHPO | Reticulon-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtn1 PE=1 SV=1 | 81 | 230 | 7.0E-12 |
| sp|Q04947|RTN1_YEAST | Reticulon-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN1 PE=1 SV=1 | 79 | 309 | 6.0E-10 |
| sp|Q12443|RTN2_YEAST | Reticulon-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN2 PE=1 SV=1 | 75 | 241 | 2.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 87 | 109 | 22 |
| 2 | 178 | 200 | 22 |
| 3 | 204 | 223 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1171 MADSMDNSLSANAGSLLESTKTNAAAAFGSVTNGPVAQNVKDESAKTSAELSNLASSRKTPSQRAVTGQPLTHYH SFFSELLSWNNPRASALAYVSIVSFILAARYLDVIRWALKMSWMALAVTSSAEAAGKVVLNHGIASQMRPRRYYT VSRATLDKMIGDVNELVNFFIIEAQRILFAENIGASVAAFVAAFVLYHLAKLVPYWGLAIMATTVTFFVPLVYKS NQEVIDSQIKNASEMIGAQTAQFRNVAQKQANHLTTVSKQYAGDYTGKVQEMLRGRGATPTAASTKPSLPDVQPE FPSPPEEEPQKPSLHMSQSEVLAAPEAEGEPLDKAAVVEKEPLLAS* |
| Coding | >OphauB2|1171 ATGGCTGATAGCATGGACAATTCGCTTTCAGCCAATGCTGGTTCACTCCTCGAGTCAACAAAGACGAACGCTGCT GCAGCTTTTGGTTCCGTTACCAATGGCCCTGTTGCACAGAATGTCAAAGATGAATCTGCCAAAACGTCAGCTGAA CTGTCCAATCTCGCATCTTCTCGAAAGACACCCTCGCAGCGAGCAGTGACGGGTCAACCCCTGACGCACTACCAC TCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGAGCCTCTGCTCTGGCCTATGTGTCAATCGTCTCCTTC ATCTTGGCCGCCCGATACTTGGACGTTATCCGATGGGCTCTCAAAATGTCGTGGATGGCTCTTGCAGTGACTAGC AGCGCCGAGGCGGCGGGCAAAGTCGTCTTAAACCACGGCATTGCCTCGCAAATGCGCCCTCGTCGATATTACACG GTGTCCAGAGCCACCTTGGACAAGATGATTGGTGATGTTAACGAGCTGGTCAACTTTTTCATCATCGAAGCTCAA CGGATTTTGTTTGCTGAAAACATTGGTGCTTCTGTTGCGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCC AAGCTTGTCCCGTACTGGGGTCTGGCCATTATGGCCACTACTGTCACCTTTTTTGTCCCCCTTGTCTACAAGTCC AACCAAGAGGTTATCGACAGCCAAATCAAGAATGCCTCGGAAATGATAGGCGCTCAAACGGCACAGTTCCGCAAT GTGGCACAGAAGCAGGCCAACCACTTGACGACGGTGAGCAAACAGTACGCTGGCGACTACACGGGCAAGGTTCAG GAAATGCTTCGCGGTCGTGGCGCCACTCCGACGGCGGCTTCTACAAAGCCAAGTCTGCCTGACGTGCAGCCCGAG TTCCCGTCTCCTCCCGAAGAAGAACCCCAAAAGCCTAGTCTTCACATGTCGCAGAGCGAAGTCTTGGCTGCGCCG GAGGCCGAGGGCGAGCCTTTGGACAAGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |
| Transcript | >OphauB2|1171 ATGGCTGATAGCATGGACAATTCGCTTTCAGCCAATGCTGGTTCACTCCTCGAGTCAACAAAGACGAACGCTGCT GCAGCTTTTGGTTCCGTTACCAATGGCCCTGTTGCACAGAATGTCAAAGATGAATCTGCCAAAACGTCAGCTGAA CTGTCCAATCTCGCATCTTCTCGAAAGACACCCTCGCAGCGAGCAGTGACGGGTCAACCCCTGACGCACTACCAC TCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGAGCCTCTGCTCTGGCCTATGTGTCAATCGTCTCCTTC ATCTTGGCCGCCCGATACTTGGACGTTATCCGATGGGCTCTCAAAATGTCGTGGATGGCTCTTGCAGTGACTAGC AGCGCCGAGGCGGCGGGCAAAGTCGTCTTAAACCACGGCATTGCCTCGCAAATGCGCCCTCGTCGATATTACACG GTGTCCAGAGCCACCTTGGACAAGATGATTGGTGATGTTAACGAGCTGGTCAACTTTTTCATCATCGAAGCTCAA CGGATTTTGTTTGCTGAAAACATTGGTGCTTCTGTTGCGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCC AAGCTTGTCCCGTACTGGGGTCTGGCCATTATGGCCACTACTGTCACCTTTTTTGTCCCCCTTGTCTACAAGTCC AACCAAGAGGTTATCGACAGCCAAATCAAGAATGCCTCGGAAATGATAGGCGCTCAAACGGCACAGTTCCGCAAT GTGGCACAGAAGCAGGCCAACCACTTGACGACGGTGAGCAAACAGTACGCTGGCGACTACACGGGCAAGGTTCAG GAAATGCTTCGCGGTCGTGGCGCCACTCCGACGGCGGCTTCTACAAAGCCAAGTCTGCCTGACGTGCAGCCCGAG TTCCCGTCTCCTCCCGAAGAAGAACCCCAAAAGCCTAGTCTTCACATGTCGCAGAGCGAAGTCTTGGCTGCGCCG GAGGCCGAGGGCGAGCCTTTGGACAAGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |
| Gene | >OphauB2|1171 ATGGCTGATAGCATGGACAATTCGCTTTCAGCCAATGCTGGTTCACTCCTCGAGTCAACAAAGACGAGTGAGGTA AGCATTCCTCTTCTCTGAGGAAACAAAGTTTTCTGCCCTTCTTGTCATCTCCCTCTCTATCCATGGCAAGCTTGA GACGGCCAGTCTGCTAATTTTTCCTAGTATCGACATGCTGTGACGCGACAGGCCCCCTTTTTGGGGCAAGGCAAA GGACACTTGAAACTGACTCTTTTACAAAAATTCACAGACGCTGCTGCAGCTTTTGGTTCCGTTACCAATGGTGAC GTGCTCGTCTCCCTCTAGCATATCGTCTTTTGCTAACACTCATGCCCAGGCCCTGTTGCACAGAATGTCAAAGAT GAATCTGCCAAAACGTCAGCTGAACTGTCCAATCTCGCATCTTCTCGAAAGACACCCTCGCAGCGAGCAGTGACG GGTCAACCCCTGACGCACTACCACTCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGTGAGCAAATTTGT GTCTTGAGACTGTTGTTTTGATAGCCGTGCTGACAAATTTGCAGGAGCCTCTGCTCTGGCCTATGTGTCAATCGT CTCCTTCATCTTGGCCGCCCGATACTTGGACGTTATCCGATGGGCTCTCAAAATGTCGTGGATGGCTCTTGCAGT GACTAGCAGCGCCGAGGCGGCGGGCAAAGTCGTCTTAAACCACGGCATTGCCTCGCAAATGCGCCCTCGTCGATA TTACACGGTGTCCAGAGCCACCTTGGACAAGATGATTGGTGATGTTAACGAGCTGGTCAACTTTTTCATCATCGA AGCTCAACGGATTTTGTTTGCTGAAAACATTGGTGCTTCTGTTGCGGTGGGTTGGCTCCATGACTTGACACTTCT GAGACGCATGACTGATAGCAGGTAGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCCAAGCTTGTCCCGTA CTGGGGTCTGGCCATTATGGCCACTACTGTCACCTTTTTTGTCCCCCTTGTCTACAAGTCCAACCAAGAGGTTAT CGACAGCCAAATCAAGAATGCCTCGGAAATGATAGGCGCTCAAACGGCACAGTTCCGCAATGTGGCACAGAAGCA GGCCAACCACTTGACGACGGTGAGCAAACAGTACGCTGGCGACTACACGGGCAAGGTTCAGGAAATGCTTCGCGG TCGTGGCGCCACTCCGACGGCGGCTTCTACAAAGCCAAGTCTGCCTGACGTGCAGCCCGAGTTCCCGTCTCCTCC CGAAGAAGAACCCCAAAAGCCTAGTCTTCACATGTCGCAGAGCGAAGTCTTGGCTGCGCCGGAGGCCGAGGGCGA GCCTTTGGACAAGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |