© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1165 |
| Gene name | |
| Location | Contig_129:10876..12916 |
| Strand | - |
| Gene length (bp) | 2040 |
| Transcript length (bp) | 1881 |
| Coding sequence length (bp) | 1881 |
| Protein length (aa) | 627 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04851 | ResIII | Type III restriction enzyme, res subunit | 1.9E-24 | 17 | 179 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 7.8E-13 | 258 | 356 |
| PF00270 | DEAD | DEAD/DEAH box helicase | 4.3E-11 | 21 | 182 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTR1|IRC3_SCHPO | Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irc3 PE=3 SV=2 | 17 | 592 | 3.0E-117 |
| sp|Q06683|IRC3_YEAST | Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC3 PE=1 SV=1 | 19 | 385 | 9.0E-106 |
| sp|P33919|YEJH_ECOLI | Uncharacterized protein YejH OS=Escherichia coli (strain K12) GN=yejH PE=3 SV=2 | 17 | 371 | 1.0E-28 |
| sp|P24125|V51K_BPL79 | 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) PE=3 SV=1 | 48 | 369 | 2.0E-16 |
| sp|P08956|T1RK_ECOLI | Type I restriction enzyme EcoKI R protein OS=Escherichia coli (strain K12) GN=hsdR PE=3 SV=3 | 15 | 374 | 2.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTR1|IRC3_SCHPO | Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irc3 PE=3 SV=2 | 17 | 592 | 3.0E-117 |
| sp|Q06683|IRC3_YEAST | Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC3 PE=1 SV=1 | 19 | 385 | 9.0E-106 |
| sp|P33919|YEJH_ECOLI | Uncharacterized protein YejH OS=Escherichia coli (strain K12) GN=yejH PE=3 SV=2 | 17 | 371 | 1.0E-28 |
| sp|P24125|V51K_BPL79 | 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) PE=3 SV=1 | 48 | 369 | 2.0E-16 |
| sp|P08956|T1RK_ECOLI | Type I restriction enzyme EcoKI R protein OS=Escherichia coli (strain K12) GN=hsdR PE=3 SV=3 | 15 | 374 | 2.0E-16 |
| sp|Q07736|T1RA_ECOLX | Type I restriction enzyme EcoAI R protein OS=Escherichia coli GN=hsdR PE=3 SV=1 | 20 | 454 | 3.0E-14 |
| sp|Q914K8|Y022_SIFVH | Putative helicase 22 OS=Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) GN=SIFV0022 PE=3 SV=1 | 17 | 376 | 5.0E-14 |
| sp|Q47281|T1RE_ECOLX | Type I restriction enzyme EcoEI R protein OS=Escherichia coli GN=hsdR PE=3 SV=1 | 20 | 413 | 8.0E-13 |
| sp|A7EYW0|DBP3_SCLS1 | ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2 | 37 | 335 | 1.0E-09 |
| sp|A6SCT6|DBP3_BOTFB | ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp3 PE=3 SV=1 | 37 | 335 | 6.0E-09 |
| sp|A5DQS0|DED1_PICGU | ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=DED1 PE=3 SV=3 | 74 | 335 | 9.0E-08 |
| sp|Q4R3Q1|IF4A3_MACFA | Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3 | 266 | 355 | 4.0E-07 |
| sp|P38919|IF4A3_HUMAN | Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4 | 266 | 355 | 4.0E-07 |
| sp|Q2NL22|IF4A3_BOVIN | Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3 | 266 | 355 | 4.0E-07 |
| sp|A6M931|IF4A3_PIG | Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1 | 266 | 355 | 4.0E-07 |
| sp|Q3B8Q2|IF4A3_RAT | Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1 | 266 | 355 | 4.0E-07 |
| sp|Q91VC3|IF4A3_MOUSE | Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=1 SV=3 | 266 | 355 | 5.0E-07 |
| sp|B5FZY7|IF4A3_TAEGU | Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1 | 266 | 355 | 5.0E-07 |
| sp|Q5ZM36|IF4A3_CHICK | Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1 | 266 | 355 | 5.0E-07 |
| sp|O42226|I4A3B_XENLA | Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-b PE=2 SV=1 | 266 | 355 | 6.0E-07 |
| sp|B7ZTW1|IF4A3_XENTR | Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1 | 266 | 355 | 6.0E-07 |
| sp|B5DG42|IF4A3_SALSA | Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1 | 266 | 355 | 7.0E-07 |
| sp|Q5U526|I4A3A_XENLA | Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-a PE=2 SV=1 | 266 | 360 | 7.0E-07 |
| sp|Q6BU54|DED1_DEBHA | ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DED1 PE=3 SV=1 | 134 | 335 | 9.0E-07 |
| sp|A5DZE6|DED1_LODEL | ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=DED1 PE=3 SV=1 | 134 | 335 | 1.0E-06 |
| sp|Q5V5F7|RAD25_HALMA | Putative DNA helicase Rad25 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rad25 PE=3 SV=2 | 5 | 355 | 2.0E-06 |
| sp|A3LQ01|DED1_PICST | ATP-dependent RNA helicase DED1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=DED1 PE=3 SV=3 | 47 | 335 | 6.0E-06 |
| sp|Q75B50|DED1_ASHGO | ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1 PE=3 SV=2 | 134 | 335 | 6.0E-06 |
| sp|Q7NJH7|UVRB_GLOVI | UvrABC system protein B OS=Gloeobacter violaceus (strain PCC 7421) GN=uvrB PE=3 SV=1 | 258 | 403 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0017076 | purine nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043168 | anion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1165 MHPRLQLSRASTLATKLTLRDYQLECIRSVIASLGRGHKRVGISLATGSGKTVIFTQLIDQVGPRSDGKGDRTLI LAHRRELVEQAARQCQQAYPDKTIDIEMGSLHASGTADITVASVQSITSKDRLVKYDPAAFKLVLVDEAHHIVAS GYLRTLKHFGLDQKQTESPTLVGVSATFSRFDGLKLGAAIDEIVYHKDYIDMIEDKWLADVILTTVESKANLSKV RSNSSGDFQTGDLSKVVNTQEVNEITVRTWMAKASDRKSTLVFCVDLAHVAGLTEKFREYGLDARSVTGDTPKLQ RSRTLDAFKTGHYPILVNCGVFTEGTDIPNIDCIVIGRPTRSRNLLVQMIGRGMRLHPGKQNCHIIDLVSSLDTG IVTTPTLFGLDPNLLVDKVSVTKIKDQKLQDSSDHQQSNRTDSVTVSNSPIIFTDYSSILDLIADTSGEKHIRAI SQNAWIQAAPDRYVLSAPSGSYIRLERIQEEDINQPTALYRAVEVRALPPGLGKSPFAARREILTAATFQDAVHG ADRYAADAFPQTFINRHQPWRSLPATQGQLGFINKIRGKAEPLTAAELTKGRAADMITKIKHGARGQFNKIEAEQ RRRLRQVSMMDARRNREVVKVGPVAA* |
| Coding | >OphauB2|1165 ATGCACCCAAGATTGCAGCTCAGCAGAGCATCGACACTGGCTACCAAGTTGACGCTGAGAGACTACCAGCTCGAA TGCATCCGTTCTGTGATTGCATCACTTGGGCGAGGCCATAAACGAGTTGGAATCTCTTTGGCCACGGGCAGCGGC AAAACAGTCATCTTCACTCAGCTCATTGACCAAGTTGGCCCGCGATCCGACGGCAAAGGAGACCGCACTCTCATC TTAGCCCATCGCCGCGAATTGGTAGAGCAAGCTGCTCGTCAATGCCAGCAGGCGTATCCAGACAAGACAATCGAC ATTGAAATGGGCTCTCTTCACGCCTCGGGCACAGCCGACATCACGGTAGCCAGCGTTCAAAGCATCACATCCAAG GATCGTCTTGTCAAGTACGACCCTGCTGCCTTTAAACTTGTCCTTGTCGATGAAGCCCACCACATTGTCGCTTCA GGATACCTACGTACCCTCAAGCACTTTGGTCTCGACCAGAAGCAAACGGAGTCGCCGACCCTTGTTGGCGTGTCT GCCACTTTCTCTCGCTTCGATGGCCTCAAACTCGGCGCTGCTATTGACGAGATTGTCTACCATAAGGACTATATC GACATGATCGAGGACAAGTGGCTAGCCGACGTCATTCTGACTACCGTTGAATCCAAGGCAAACCTGTCAAAGGTT CGCAGTAATTCCAGTGGCGACTTCCAAACCGGAGACTTGTCAAAGGTGGTCAACACGCAAGAGGTCAATGAAATC ACAGTTCGCACCTGGATGGCCAAGGCCTCTGATCGCAAATCAACGCTGGTATTCTGCGTCGACCTCGCCCATGTT GCTGGCTTGACCGAAAAGTTTCGTGAATATGGCCTCGACGCAAGGTCCGTCACAGGCGACACGCCCAAGCTGCAA CGAAGCCGCACTCTAGACGCTTTCAAAACCGGCCATTATCCTATCCTTGTCAACTGTGGCGTCTTTACCGAGGGC ACTGACATTCCAAACATTGACTGCATCGTCATTGGCCGCCCGACCAGATCACGCAACTTGCTCGTACAAATGATA GGTCGGGGCATGCGCCTCCACCCAGGCAAGCAGAACTGCCACATTATTGATCTTGTCTCAAGTCTCGACACGGGC ATCGTTACGACACCTACCCTCTTTGGTCTCGACCCAAATTTGCTCGTGGACAAGGTGTCCGTCACTAAAATCAAG GATCAAAAATTGCAGGACAGCTCTGATCATCAGCAATCAAATAGAACAGATTCAGTAACTGTCTCCAACAGCCCT ATAATCTTCACCGACTACTCATCCATACTTGATCTCATTGCCGACACGTCGGGCGAGAAGCACATTCGTGCCATC AGCCAGAATGCCTGGATCCAGGCCGCTCCGGATCGCTATGTTCTTTCAGCCCCAAGCGGCTCTTACATTCGACTC GAGCGTATTCAAGAAGAAGACATCAACCAGCCAACCGCTTTATATCGCGCCGTTGAGGTGCGGGCTCTTCCTCCC GGCTTGGGCAAGTCACCATTTGCCGCGCGCAGAGAGATTCTTACTGCGGCCACTTTTCAAGACGCGGTTCACGGC GCCGACCGATATGCCGCAGATGCCTTTCCCCAAACCTTCATAAACCGGCACCAGCCTTGGCGCTCGCTGCCAGCA ACTCAAGGCCAGCTTGGCTTCATCAACAAGATTCGTGGCAAGGCCGAGCCCTTGACAGCTGCCGAATTGACGAAG GGAAGAGCAGCAGACATGATTACCAAAATCAAGCACGGAGCCCGCGGCCAGTTCAACAAAATCGAGGCTGAGCAG CGAAGACGGCTCAGACAAGTTTCTATGATGGATGCTAGACGCAACCGCGAAGTCGTAAAGGTCGGGCCTGTGGCA GCTTGA |
| Transcript | >OphauB2|1165 ATGCACCCAAGATTGCAGCTCAGCAGAGCATCGACACTGGCTACCAAGTTGACGCTGAGAGACTACCAGCTCGAA TGCATCCGTTCTGTGATTGCATCACTTGGGCGAGGCCATAAACGAGTTGGAATCTCTTTGGCCACGGGCAGCGGC AAAACAGTCATCTTCACTCAGCTCATTGACCAAGTTGGCCCGCGATCCGACGGCAAAGGAGACCGCACTCTCATC TTAGCCCATCGCCGCGAATTGGTAGAGCAAGCTGCTCGTCAATGCCAGCAGGCGTATCCAGACAAGACAATCGAC ATTGAAATGGGCTCTCTTCACGCCTCGGGCACAGCCGACATCACGGTAGCCAGCGTTCAAAGCATCACATCCAAG GATCGTCTTGTCAAGTACGACCCTGCTGCCTTTAAACTTGTCCTTGTCGATGAAGCCCACCACATTGTCGCTTCA GGATACCTACGTACCCTCAAGCACTTTGGTCTCGACCAGAAGCAAACGGAGTCGCCGACCCTTGTTGGCGTGTCT GCCACTTTCTCTCGCTTCGATGGCCTCAAACTCGGCGCTGCTATTGACGAGATTGTCTACCATAAGGACTATATC GACATGATCGAGGACAAGTGGCTAGCCGACGTCATTCTGACTACCGTTGAATCCAAGGCAAACCTGTCAAAGGTT CGCAGTAATTCCAGTGGCGACTTCCAAACCGGAGACTTGTCAAAGGTGGTCAACACGCAAGAGGTCAATGAAATC ACAGTTCGCACCTGGATGGCCAAGGCCTCTGATCGCAAATCAACGCTGGTATTCTGCGTCGACCTCGCCCATGTT GCTGGCTTGACCGAAAAGTTTCGTGAATATGGCCTCGACGCAAGGTCCGTCACAGGCGACACGCCCAAGCTGCAA CGAAGCCGCACTCTAGACGCTTTCAAAACCGGCCATTATCCTATCCTTGTCAACTGTGGCGTCTTTACCGAGGGC ACTGACATTCCAAACATTGACTGCATCGTCATTGGCCGCCCGACCAGATCACGCAACTTGCTCGTACAAATGATA GGTCGGGGCATGCGCCTCCACCCAGGCAAGCAGAACTGCCACATTATTGATCTTGTCTCAAGTCTCGACACGGGC ATCGTTACGACACCTACCCTCTTTGGTCTCGACCCAAATTTGCTCGTGGACAAGGTGTCCGTCACTAAAATCAAG GATCAAAAATTGCAGGACAGCTCTGATCATCAGCAATCAAATAGAACAGATTCAGTAACTGTCTCCAACAGCCCT ATAATCTTCACCGACTACTCATCCATACTTGATCTCATTGCCGACACGTCGGGCGAGAAGCACATTCGTGCCATC AGCCAGAATGCCTGGATCCAGGCCGCTCCGGATCGCTATGTTCTTTCAGCCCCAAGCGGCTCTTACATTCGACTC GAGCGTATTCAAGAAGAAGACATCAACCAGCCAACCGCTTTATATCGCGCCGTTGAGGTGCGGGCTCTTCCTCCC GGCTTGGGCAAGTCACCATTTGCCGCGCGCAGAGAGATTCTTACTGCGGCCACTTTTCAAGACGCGGTTCACGGC GCCGACCGATATGCCGCAGATGCCTTTCCCCAAACCTTCATAAACCGGCACCAGCCTTGGCGCTCGCTGCCAGCA ACTCAAGGCCAGCTTGGCTTCATCAACAAGATTCGTGGCAAGGCCGAGCCCTTGACAGCTGCCGAATTGACGAAG GGAAGAGCAGCAGACATGATTACCAAAATCAAGCACGGAGCCCGCGGCCAGTTCAACAAAATCGAGGCTGAGCAG CGAAGACGGCTCAGACAAGTTTCTATGATGGATGCTAGACGCAACCGCGAAGTCGTAAAGGTCGGGCCTGTGGCA GCTTGA |
| Gene | >OphauB2|1165 ATGCACCCAAGATTGCAGCTCAGCAGAGCATCGACACTGGCTACCAAGTTGACGCTGAGAGACTACCAGCTCGAA TGCATCCGTTCTGTGATTGCATCACTTGGGCGAGGCCATAAACGAGTTGGAATCTCTTTGGCCACGGGCAGCGGC AAAACAGTATGTATACATCACTCTGAATTTTGCTCCTGTTTCCCGTGGCCCTTCTCTTCCCACTGTTACACACAG CTGCTCATGAACCTCGCATTTTGCTTTTGCCTCTTTGTTCTCATCCTTCAACTTGTCTTGTTCTTTTGTTCAAGC TGATATGTCCTGTAGGTCATCTTCACTCAGCTCATTGACCAAGTTGGCCCGCGATCCGACGGCAAAGGAGACCGC ACTCTCATCTTAGCCCATCGCCGCGAATTGGTAGAGCAAGCTGCTCGTCAATGCCAGCAGGCGTATCCAGACAAG ACAATCGACATTGAAATGGGCTCTCTTCACGCCTCGGGCACAGCCGACATCACGGTAGCCAGCGTTCAAAGCATC ACATCCAAGGATCGTCTTGTCAAGTACGACCCTGCTGCCTTTAAACTTGTCCTTGTCGATGAAGCCCACCACATT GTCGCTTCAGGATACCTACGTACCCTCAAGCACTTTGGTCTCGACCAGAAGCAAACGGAGTCGCCGACCCTTGTT GGCGTGTCTGCCACTTTCTCTCGCTTCGATGGCCTCAAACTCGGCGCTGCTATTGACGAGATTGTCTACCATAAG GACTATATCGACATGATCGAGGACAAGTGGCTAGCCGACGTCATTCTGACTACCGTTGAATCCAAGGCAAACCTG TCAAAGGTTCGCAGTAATTCCAGTGGCGACTTCCAAACCGGAGACTTGTCAAAGGTGGTCAACACGCAAGAGGTC AATGAAATCACAGTTCGCACCTGGATGGCCAAGGCCTCTGATCGCAAATCAACGCTGGTATTCTGCGTCGACCTC GCCCATGTTGCTGGCTTGACCGAAAAGTTTCGTGAATATGGCCTCGACGCAAGGTCCGTCACAGGCGACACGCCC AAGCTGCAACGAAGCCGCACTCTAGACGCTTTCAAAACCGGCCATTATCCTATCCTTGTCAACTGTGGCGTCTTT ACCGAGGGCACTGACATTCCAAACATTGACTGCATCGTCATTGGCCGCCCGACCAGATCACGCAACTTGCTCGTA CAAATGATAGGTCGGGGCATGCGCCTCCACCCAGGCAAGCAGAACTGCCACATTATTGATCTTGTCTCAAGTCTC GACACGGGCATCGTTACGACACCTACCCTCTTTGGTCTCGACCCAAATTTGCTCGTGGACAAGGTGTCCGTCACT AAAATCAAGGATCAAAAATTGCAGGACAGCTCTGATCATCAGCAATCAAATAGAACAGATTCAGTAACTGTCTCC AACAGCCCTATAATCTTCACCGACTACTCATCCATACTTGATCTCATTGCCGACACGTCGGGCGAGAAGCACATT CGTGCCATCAGCCAGAATGCCTGGATCCAGGCCGCTCCGGATCGCTATGTTCTTTCAGCCCCAAGCGGCTCTTAC ATTCGACTCGAGCGTATTCAAGAAGAAGACATCAACCAGCCAACCGCTTTATATCGCGCCGTTGAGGTGCGGGCT CTTCCTCCCGGCTTGGGCAAGTCACCATTTGCCGCGCGCAGAGAGATTCTTACTGCGGCCACTTTTCAAGACGCG GTTCACGGCGCCGACCGATATGCCGCAGATGCCTTTCCCCAAACCTTCATAAACCGGCACCAGCCTTGGCGCTCG CTGCCAGCAACTCAAGGCCAGCTTGGCTTCATCAACAAGATTCGTGGCAAGGCCGAGCCCTTGACAGCTGCCGAA TTGACGAAGGGAAGAGCAGCAGACATGATTACCAAAATCAAGCACGGAGCCCGCGGCCAGTTCAACAAAATCGAG GCTGAGCAGCGAAGACGGCTCAGACAAGTTTCTATGATGGATGCTAGACGCAACCGCGAAGTCGTAAAGGTCGGG CCTGTGGCAGCTTGA |