© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1155 |
| Gene name | |
| Location | Contig_128:41393..42873 |
| Strand | + |
| Gene length (bp) | 1480 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04056 | Ssl1 | Ssl1-like | 9.3E-71 | 109 | 306 |
| PF13519 | VWA_2 | von Willebrand factor type A domain | 2.3E-16 | 106 | 215 |
| PF07975 | C1_4 | TFIIH C1-like domain | 2.6E-16 | 386 | 456 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74995|TFH47_SCHPO | TFIIH basal transcription factor complex p47 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfh47 PE=1 SV=1 | 21 | 455 | 4.0E-145 |
| sp|Q04673|SSL1_YEAST | Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1 | 11 | 457 | 3.0E-130 |
| sp|Q2TBV5|TF2H2_BOVIN | General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1 | 50 | 454 | 8.0E-84 |
| sp|A0JN27|TF2H2_RAT | General transcription factor IIH subunit 2 OS=Rattus norvegicus GN=Gtf2h2 PE=1 SV=1 | 50 | 454 | 1.0E-81 |
| sp|Q86KZ2|TF2H2_DICDI | General transcription factor IIH subunit 2 OS=Dictyostelium discoideum GN=gtf2h2 PE=3 SV=2 | 26 | 456 | 6.0E-80 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74995|TFH47_SCHPO | TFIIH basal transcription factor complex p47 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfh47 PE=1 SV=1 | 21 | 455 | 4.0E-145 |
| sp|Q04673|SSL1_YEAST | Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1 | 11 | 457 | 3.0E-130 |
| sp|Q2TBV5|TF2H2_BOVIN | General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1 | 50 | 454 | 8.0E-84 |
| sp|A0JN27|TF2H2_RAT | General transcription factor IIH subunit 2 OS=Rattus norvegicus GN=Gtf2h2 PE=1 SV=1 | 50 | 454 | 1.0E-81 |
| sp|Q86KZ2|TF2H2_DICDI | General transcription factor IIH subunit 2 OS=Dictyostelium discoideum GN=gtf2h2 PE=3 SV=2 | 26 | 456 | 6.0E-80 |
| sp|Q9JIB4|TF2H2_MOUSE | General transcription factor IIH subunit 2 OS=Mus musculus GN=Gtf2h2 PE=1 SV=1 | 50 | 454 | 9.0E-80 |
| sp|Q6P1K8|T2H2L_HUMAN | General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=1 SV=1 | 50 | 454 | 2.0E-79 |
| sp|Q13888|TF2H2_HUMAN | General transcription factor IIH subunit 2 OS=Homo sapiens GN=GTF2H2 PE=1 SV=1 | 50 | 454 | 5.0E-79 |
| sp|P34567|TF2H2_CAEEL | General transcription factor IIH subunit 2 OS=Caenorhabditis elegans GN=T16H12.4 PE=3 SV=3 | 59 | 455 | 4.0E-61 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0051716 | cellular response to stimulus | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0043167 | ion binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0046483 | heterocycle metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1155 MADSDGEFVAEGMSDDDVHDVNLSDDDEDRRRGPGKAGQPRGRKRRRRGERASAQQAWEKSKRSWETNLPDEDED GVLKLTALEAERRRRLLRDTTPLQRGIIRHMVLVIDMSFAMADKDMLPTRYRLTLGYAAAFVDDYFEQNPISQLA IVGMRDGIAVRISDLGGNPAEHLERLRTLQEQEPQGNPSLQNALEMCRGALFHAPSHGTREVLVIYGALLSSDPG DIHDTMASLVADGIRVSIVGLSAQVAICAQLCARTNGGHDGHYRVAMDEVHLRELVLAATTPPITRTAHVGAASL LIMGFPSRTLGPAGAPGFCACHSRPCREAYACTRCAARVCRLPAQCPACGLTLILSTHLARSYHHLFPLRNWVEV TWPDAVRSTACFACQAPFPDAQSRLSRAHASQDPSGHLAQSMPKGVSESGRYACPICACHFCIDCDVFAHQVVHN CPGCQSNQRPSTAMANGAMDLDP* |
| Coding | >OphauB2|1155 ATGGCAGACTCGGATGGCGAGTTTGTGGCCGAGGGCATGTCGGACGATGATGTTCACGACGTCAACTTGAGCGAC GACGACGAGGACAGACGGCGAGGGCCAGGCAAAGCAGGGCAGCCACGAGGGCGAAAACGACGGCGGCGAGGCGAG CGGGCATCGGCGCAGCAGGCGTGGGAAAAGTCGAAGCGGTCATGGGAGACAAACCTGCCCGACGAGGACGAGGAC GGGGTGCTCAAGCTGACGGCTCTCGAGGCGGAGCGGCGGCGACGGCTGCTGCGAGACACGACGCCGCTGCAGCGA GGCATCATCCGGCACATGGTGCTCGTCATTGACATGTCGTTTGCCATGGCGGACAAGGACATGCTGCCGACGCGC TACCGGCTGACGCTGGGATACGCGGCGGCCTTTGTGGACGACTATTTTGAGCAGAACCCCATTTCGCAGCTGGCC ATTGTGGGCATGCGCGACGGCATCGCGGTGCGCATCAGCGACCTTGGGGGAAACCCGGCCGAGCACCTCGAGCGG CTGCGGACGCTGCAAGAGCAGGAGCCGCAGGGCAACCCCAGCCTGCAAAACGCCCTCGAGATGTGCCGCGGCGCT CTGTTCCACGCGCCCTCGCATGGCACGCGCGAGGTGCTCGTCATCTACGGCGCCCTCTTGTCGAGCGATCCAGGC GACATACACGACACCATGGCCAGCCTCGTGGCCGACGGCATCCGCGTCTCCATTGTCGGCCTGTCGGCCCAGGTG GCCATCTGCGCCCAGCTGTGCGCCCGCACCAACGGCGGCCATGACGGCCACTACCGCGTCGCCATGGACGAGGTG CATCTGCGCGAGCTGGTCCTCGCCGCCACCACGCCGCCCATTACCCGCACAGCCCATGTTGGCGCCGCCAGCCTG CTCATCATGGGCTTCCCCTCGCGCACTCTTGGGCCCGCCGGCGCCCCTGGCTTTTGCGCCTGCCACAGCCGTCCC TGTCGCGAGGCTTATGCCTGCACCCGCTGTGCCGCCCGCGTCTGCCGCCTGCCCGCCCAGTGTCCCGCCTGTGGC CTCACCCTTATTCTCTCCACCCATCTCGCCCGCTCCTACCACCATCTCTTCCCCCTGCGCAACTGGGTCGAGGTG ACCTGGCCCGACGCTGTGCGCTCCACTGCTTGCTTTGCCTGCCAGGCTCCCTTTCCCGACGCCCAGTCGCGCCTC TCGAGAGCCCATGCCTCTCAAGACCCTTCCGGCCACCTGGCCCAATCCATGCCCAAGGGCGTCAGTGAGAGCGGC CGCTACGCATGCCCAATCTGTGCATGTCACTTCTGCATCGACTGCGACGTCTTTGCCCACCAAGTTGTTCACAAC TGCCCCGGTTGTCAGAGCAACCAGCGCCCCTCGACAGCAATGGCAAACGGCGCCATGGACTTGGATCCCTAG |
| Transcript | >OphauB2|1155 ATGGCAGACTCGGATGGCGAGTTTGTGGCCGAGGGCATGTCGGACGATGATGTTCACGACGTCAACTTGAGCGAC GACGACGAGGACAGACGGCGAGGGCCAGGCAAAGCAGGGCAGCCACGAGGGCGAAAACGACGGCGGCGAGGCGAG CGGGCATCGGCGCAGCAGGCGTGGGAAAAGTCGAAGCGGTCATGGGAGACAAACCTGCCCGACGAGGACGAGGAC GGGGTGCTCAAGCTGACGGCTCTCGAGGCGGAGCGGCGGCGACGGCTGCTGCGAGACACGACGCCGCTGCAGCGA GGCATCATCCGGCACATGGTGCTCGTCATTGACATGTCGTTTGCCATGGCGGACAAGGACATGCTGCCGACGCGC TACCGGCTGACGCTGGGATACGCGGCGGCCTTTGTGGACGACTATTTTGAGCAGAACCCCATTTCGCAGCTGGCC ATTGTGGGCATGCGCGACGGCATCGCGGTGCGCATCAGCGACCTTGGGGGAAACCCGGCCGAGCACCTCGAGCGG CTGCGGACGCTGCAAGAGCAGGAGCCGCAGGGCAACCCCAGCCTGCAAAACGCCCTCGAGATGTGCCGCGGCGCT CTGTTCCACGCGCCCTCGCATGGCACGCGCGAGGTGCTCGTCATCTACGGCGCCCTCTTGTCGAGCGATCCAGGC GACATACACGACACCATGGCCAGCCTCGTGGCCGACGGCATCCGCGTCTCCATTGTCGGCCTGTCGGCCCAGGTG GCCATCTGCGCCCAGCTGTGCGCCCGCACCAACGGCGGCCATGACGGCCACTACCGCGTCGCCATGGACGAGGTG CATCTGCGCGAGCTGGTCCTCGCCGCCACCACGCCGCCCATTACCCGCACAGCCCATGTTGGCGCCGCCAGCCTG CTCATCATGGGCTTCCCCTCGCGCACTCTTGGGCCCGCCGGCGCCCCTGGCTTTTGCGCCTGCCACAGCCGTCCC TGTCGCGAGGCTTATGCCTGCACCCGCTGTGCCGCCCGCGTCTGCCGCCTGCCCGCCCAGTGTCCCGCCTGTGGC CTCACCCTTATTCTCTCCACCCATCTCGCCCGCTCCTACCACCATCTCTTCCCCCTGCGCAACTGGGTCGAGGTG ACCTGGCCCGACGCTGTGCGCTCCACTGCTTGCTTTGCCTGCCAGGCTCCCTTTCCCGACGCCCAGTCGCGCCTC TCGAGAGCCCATGCCTCTCAAGACCCTTCCGGCCACCTGGCCCAATCCATGCCCAAGGGCGTCAGTGAGAGCGGC CGCTACGCATGCCCAATCTGTGCATGTCACTTCTGCATCGACTGCGACGTCTTTGCCCACCAAGTTGTTCACAAC TGCCCCGGTTGTCAGAGCAACCAGCGCCCCTCGACAGCAATGGCAAACGGCGCCATGGACTTGGATCCCTAG |
| Gene | >OphauB2|1155 ATGGCAGACTCGGATGGCGAGTTTGTGGCCGAGGGCATGTCGGACGATGATGTTCACGACGTCAACTTGAGCGAC GACGACGAGGACAGACGGCGAGGGCCAGGCAAAGCAGGGCAGCCACGAGGGCGAAAACGACGGCGGCGAGGCGAG CGGGCATCGGCGCAGCAGGCGTGGGAAAAGTCGAAGCGGTCATGGGAGACAAACCTGCCCGACGAGGACGAGGAC GGGGTGCTCAAGCTGACGGCTCTCGAGGCGGAGCGGCGGCGACGGCTGCTGCGAGACACGACGCCGCTGCAGCGA GGCATCATCCGGCACATGGTGCTCGTCATTGACATGTCGTTTGCCATGGCGGACAAGGACATGCTGCCGACGCGC TACCGGCTGACGCTGGGATACGCGGCGGCCTTTGTGGACGACTATTTTGAGCAGAACCCCATTTCGCAGCTGGCC ATTGTGGGCATGCGCGACGGCATCGCGGTGCGCATCAGCGACCTTGGGGGAAACCCGGCCGAGCACCTCGAGCGG CTGCGGACGCTGCAAGAGCAGGAGCCGCAGGGCAACCCCAGCCTGCAAAACGCCCTCGAGATGTGCCGCGGCGCT CTGTTGTAGGTGCCCCTGGTGCTTCATTGCTGGCTCCAGCCCAGCAGCTGACTCTGGCCACAGCCACGCGCCCTC GCATGGCACGCGCGAGGTGCTCGTCATCTACGGCGCCCTCTTGTCGAGCGATCCAGGCGACATACACGACACCAT GGCCAGCCTCGTGGCCGACGGCATCCGCGTCTCCATTGTCGGCCTGTCGGCCCAGGTGGCCATCTGCGCCCAGCT GTGCGCCCGCACCAACGGCGGCCATGACGGCCACTACCGCGTCGCCATGGACGAGGTGCATCTGCGCGAGCTGGT CCTCGCCGCCACCACGCCGCCCATTACCCGCACAGCCCATGTTGGCGCCGCCAGCCTGCTCATCATGGGCTTCCC CTCGCGCACTCTTGGGCCCGCCGGCGCCCCTGGCTTTTGCGCCTGCCACAGCCGTCCCTGTCGCGAGGCTTATGC CTGCACCCGCTGTGCCGCCCGCGTCTGCCGCCTGCCCGCCCAGTGTCCCGCCTGTGGCCTCACCCTTATTCTCTC CACCCATCTCGCCCGCTCCTACCACCATCTCTTCCCCCTGCGCAACTGGGTCGAGGTGACCTGGCCCGACGCTGT GCGCTCCACTGCTTGCTTTGCCTGCCAGGCTCCCTTTCCCGACGCCCAGTCGCGCCTCTCGAGAGCCCATGCCTC TCAAGACCCTTCCGGCCACCTGGCCCAATCCATGCCCAAGGGCGTCAGTGAGAGCGGCCGCTACGCATGCCCAAT CTGTGCATGTCACTTCTGCATCGACTGCGACGTCTTTGCCCACCAAGTTGTTCACAACTGCCCCGGTTGTCAGAG CAACCAGCGCCCCTCGACAGCAATGGCAAACGGCGCCATGGACTTGGATCCCTAG |