© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|112 |
| Gene name | |
| Location | Contig_1:289442..291242 |
| Strand | + |
| Gene length (bp) | 1800 |
| Transcript length (bp) | 1800 |
| Coding sequence length (bp) | 1800 |
| Protein length (aa) | 600 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 4.1E-06 | 135 | 169 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 4.1E-05 | 135 | 183 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94271|YORN_SCHPO | Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=3 SV=1 | 44 | 512 | 2.0E-81 |
| sp|Q06436|MAG2_YEAST | RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1 | 6 | 428 | 3.0E-46 |
| sp|Q08E13|RNF10_BOVIN | RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1 | 80 | 320 | 1.0E-21 |
| sp|Q8N5U6|RNF10_HUMAN | RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2 | 80 | 312 | 4.0E-21 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 80 | 306 | 8.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94271|YORN_SCHPO | Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=3 SV=1 | 44 | 512 | 2.0E-81 |
| sp|Q06436|MAG2_YEAST | RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1 | 6 | 428 | 3.0E-46 |
| sp|Q08E13|RNF10_BOVIN | RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1 | 80 | 320 | 1.0E-21 |
| sp|Q8N5U6|RNF10_HUMAN | RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2 | 80 | 312 | 4.0E-21 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 80 | 306 | 8.0E-21 |
| sp|Q5XI59|RNF10_RAT | RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 | 80 | 320 | 5.0E-20 |
| sp|Q32NQ8|RNF10_XENLA | RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1 | 80 | 310 | 6.0E-20 |
| sp|Q5XI59|RNF10_RAT | RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 | 308 | 433 | 1.0E-13 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 308 | 433 | 5.0E-13 |
| sp|Q08E13|RNF10_BOVIN | RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1 | 333 | 433 | 2.0E-12 |
| sp|Q8N5U6|RNF10_HUMAN | RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2 | 333 | 433 | 2.0E-12 |
| sp|Q32NQ8|RNF10_XENLA | RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1 | 296 | 444 | 1.0E-11 |
| sp|P40072|SLX8_YEAST | E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLX8 PE=1 SV=1 | 135 | 195 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|112 MPRRSQGNRRQDEAQRRPGWGRRSDLTLNDYDAMAEDRAVGNASSRRGQTSITHLLSHSTLRPSLSHSYQTRSYR SPPPWRVQATEKSRYVHANYRFVVSPEEKYPLQAKDADLFIDWPHVWQVLASSESQASTCPICLSEPPAPRMTKC GHIFCLPCLIRFMHCEDESRPNKGARWKKCPLCEDPIYLHEVRPVRFFAGQESALPRVGEDVVLRLMARKANSTL ALPWEGGTEALKWSHDVPWHFAANVLDYARIMKGTAEYMADQYDGEVAALLKQDKEDECFGQDGEWVQKAINAVY AAKERIVVGAGNGQGALAQVKPKPGKQVAEADYYFYSSPPHLYLTPLDIRILKTKYGTFSNFPTTLLPRIEHIAT GIVVDDALRKRNKYLGHLPRGCVISLLECDWTDIVPAETLETFSKDIEERRRRNREKAASEDRERIQAERLDALA MRGSLGLQRPASPLQESPRMDPADFQPLSGATPPHARPGFAPLADVSTSPSPQRTVWGTRAVPSSPGLEAVASSP TRRSTSDDGWLKDDEFLGTAELALQLEAIDALECNESAAGGASAATGGGGGKKGNKKKKKQKITLMSTGGRRGN* |
| Coding | >OphauB2|112 ATGCCTAGACGAAGCCAGGGAAACCGGAGACAAGACGAGGCCCAGCGGCGTCCTGGTTGGGGCCGTAGAAGCGAC CTGACGCTCAACGATTATGACGCAATGGCTGAGGACCGAGCCGTGGGCAATGCTTCGAGCAGGCGAGGCCAAACG TCTATTACGCACCTGCTCAGCCACTCGACTCTGAGACCGTCGCTCAGTCACAGCTACCAGACGAGATCGTACCGC AGTCCTCCGCCTTGGAGAGTGCAGGCAACAGAAAAGTCGAGATATGTTCACGCAAACTACCGATTCGTCGTTTCA CCAGAAGAAAAGTACCCGTTACAGGCAAAGGATGCCGACTTGTTTATCGACTGGCCACATGTATGGCAAGTGCTT GCCTCGTCGGAATCGCAGGCGTCGACGTGTCCCATTTGTCTATCGGAGCCACCTGCGCCTCGCATGACCAAGTGC GGCCATATATTTTGCTTGCCCTGTCTGATTCGCTTTATGCACTGCGAGGACGAATCGCGACCAAACAAAGGCGCT CGGTGGAAGAAGTGCCCGCTTTGCGAGGACCCCATCTATCTTCACGAGGTACGGCCCGTACGCTTCTTTGCTGGA CAGGAAAGCGCACTACCACGGGTGGGAGAGGATGTTGTGCTTCGTCTGATGGCGAGAAAAGCAAACTCGACGCTG GCGTTGCCCTGGGAAGGAGGGACAGAAGCGCTCAAATGGAGCCATGACGTTCCGTGGCACTTTGCCGCCAATGTC TTGGACTATGCGCGCATCATGAAGGGAACGGCCGAGTACATGGCCGACCAGTATGATGGCGAGGTGGCAGCTCTT TTGAAGCAAGACAAGGAAGACGAATGCTTTGGCCAAGACGGAGAATGGGTACAAAAGGCAATCAATGCCGTTTAC GCGGCCAAGGAACGCATTGTTGTCGGCGCGGGCAATGGCCAAGGAGCTCTGGCACAAGTCAAGCCAAAGCCTGGC AAGCAGGTTGCTGAAGCGGACTATTACTTTTACAGCTCGCCGCCACATCTCTATCTGACTCCTCTGGATATTCGT ATCCTCAAGACCAAGTACGGCACATTTTCGAATTTCCCCACCACTCTGTTGCCGAGAATCGAGCACATTGCCACG GGCATCGTGGTGGACGACGCACTGCGCAAGCGCAACAAGTATCTCGGCCACCTTCCTCGCGGCTGTGTCATTAGC CTCCTCGAATGTGACTGGACCGACATTGTTCCTGCCGAGACGCTTGAGACGTTTTCCAAGGACATTGAGGAGCGC CGGCGGCGGAACCGCGAAAAGGCAGCGTCGGAGGATCGTGAGCGGATACAGGCTGAGCGGCTCGACGCGCTGGCT ATGCGAGGATCCTTGGGCTTGCAAAGACCAGCCTCGCCACTGCAAGAGTCGCCGCGGATGGACCCTGCCGACTTT CAGCCCCTGAGCGGAGCGACGCCGCCCCATGCACGGCCCGGCTTTGCGCCGCTGGCAGACGTGTCGACGAGTCCG TCGCCGCAGCGGACCGTGTGGGGAACGCGGGCGGTGCCCTCATCGCCGGGCCTGGAAGCCGTGGCATCGTCGCCG ACACGACGCAGCACCTCTGACGATGGCTGGCTCAAGGATGATGAGTTTTTGGGCACGGCAGAGCTGGCGCTGCAG CTAGAGGCGATTGACGCGCTGGAATGCAATGAGTCTGCAGCGGGAGGAGCATCGGCGGCAACGGGTGGTGGTGGA GGGAAAAAGGGCAACAAGAAGAAGAAGAAGCAAAAGATTACGCTCATGAGCACTGGCGGGCGAAGAGGCAACTAG |
| Transcript | >OphauB2|112 ATGCCTAGACGAAGCCAGGGAAACCGGAGACAAGACGAGGCCCAGCGGCGTCCTGGTTGGGGCCGTAGAAGCGAC CTGACGCTCAACGATTATGACGCAATGGCTGAGGACCGAGCCGTGGGCAATGCTTCGAGCAGGCGAGGCCAAACG TCTATTACGCACCTGCTCAGCCACTCGACTCTGAGACCGTCGCTCAGTCACAGCTACCAGACGAGATCGTACCGC AGTCCTCCGCCTTGGAGAGTGCAGGCAACAGAAAAGTCGAGATATGTTCACGCAAACTACCGATTCGTCGTTTCA CCAGAAGAAAAGTACCCGTTACAGGCAAAGGATGCCGACTTGTTTATCGACTGGCCACATGTATGGCAAGTGCTT GCCTCGTCGGAATCGCAGGCGTCGACGTGTCCCATTTGTCTATCGGAGCCACCTGCGCCTCGCATGACCAAGTGC GGCCATATATTTTGCTTGCCCTGTCTGATTCGCTTTATGCACTGCGAGGACGAATCGCGACCAAACAAAGGCGCT CGGTGGAAGAAGTGCCCGCTTTGCGAGGACCCCATCTATCTTCACGAGGTACGGCCCGTACGCTTCTTTGCTGGA CAGGAAAGCGCACTACCACGGGTGGGAGAGGATGTTGTGCTTCGTCTGATGGCGAGAAAAGCAAACTCGACGCTG GCGTTGCCCTGGGAAGGAGGGACAGAAGCGCTCAAATGGAGCCATGACGTTCCGTGGCACTTTGCCGCCAATGTC TTGGACTATGCGCGCATCATGAAGGGAACGGCCGAGTACATGGCCGACCAGTATGATGGCGAGGTGGCAGCTCTT TTGAAGCAAGACAAGGAAGACGAATGCTTTGGCCAAGACGGAGAATGGGTACAAAAGGCAATCAATGCCGTTTAC GCGGCCAAGGAACGCATTGTTGTCGGCGCGGGCAATGGCCAAGGAGCTCTGGCACAAGTCAAGCCAAAGCCTGGC AAGCAGGTTGCTGAAGCGGACTATTACTTTTACAGCTCGCCGCCACATCTCTATCTGACTCCTCTGGATATTCGT ATCCTCAAGACCAAGTACGGCACATTTTCGAATTTCCCCACCACTCTGTTGCCGAGAATCGAGCACATTGCCACG GGCATCGTGGTGGACGACGCACTGCGCAAGCGCAACAAGTATCTCGGCCACCTTCCTCGCGGCTGTGTCATTAGC CTCCTCGAATGTGACTGGACCGACATTGTTCCTGCCGAGACGCTTGAGACGTTTTCCAAGGACATTGAGGAGCGC CGGCGGCGGAACCGCGAAAAGGCAGCGTCGGAGGATCGTGAGCGGATACAGGCTGAGCGGCTCGACGCGCTGGCT ATGCGAGGATCCTTGGGCTTGCAAAGACCAGCCTCGCCACTGCAAGAGTCGCCGCGGATGGACCCTGCCGACTTT CAGCCCCTGAGCGGAGCGACGCCGCCCCATGCACGGCCCGGCTTTGCGCCGCTGGCAGACGTGTCGACGAGTCCG TCGCCGCAGCGGACCGTGTGGGGAACGCGGGCGGTGCCCTCATCGCCGGGCCTGGAAGCCGTGGCATCGTCGCCG ACACGACGCAGCACCTCTGACGATGGCTGGCTCAAGGATGATGAGTTTTTGGGCACGGCAGAGCTGGCGCTGCAG CTAGAGGCGATTGACGCGCTGGAATGCAATGAGTCTGCAGCGGGAGGAGCATCGGCGGCAACGGGTGGTGGTGGA GGGAAAAAGGGCAACAAGAAGAAGAAGAAGCAAAAGATTACGCTCATGAGCACTGGCGGGCGAAGAGGCAACTAG |
| Gene | >OphauB2|112 ATGCCTAGACGAAGCCAGGGAAACCGGAGACAAGACGAGGCCCAGCGGCGTCCTGGTTGGGGCCGTAGAAGCGAC CTGACGCTCAACGATTATGACGCAATGGCTGAGGACCGAGCCGTGGGCAATGCTTCGAGCAGGCGAGGCCAAACG TCTATTACGCACCTGCTCAGCCACTCGACTCTGAGACCGTCGCTCAGTCACAGCTACCAGACGAGATCGTACCGC AGTCCTCCGCCTTGGAGAGTGCAGGCAACAGAAAAGTCGAGATATGTTCACGCAAACTACCGATTCGTCGTTTCA CCAGAAGAAAAGTACCCGTTACAGGCAAAGGATGCCGACTTGTTTATCGACTGGCCACATGTATGGCAAGTGCTT GCCTCGTCGGAATCGCAGGCGTCGACGTGTCCCATTTGTCTATCGGAGCCACCTGCGCCTCGCATGACCAAGTGC GGCCATATATTTTGCTTGCCCTGTCTGATTCGCTTTATGCACTGCGAGGACGAATCGCGACCAAACAAAGGCGCT CGGTGGAAGAAGTGCCCGCTTTGCGAGGACCCCATCTATCTTCACGAGGTACGGCCCGTACGCTTCTTTGCTGGA CAGGAAAGCGCACTACCACGGGTGGGAGAGGATGTTGTGCTTCGTCTGATGGCGAGAAAAGCAAACTCGACGCTG GCGTTGCCCTGGGAAGGAGGGACAGAAGCGCTCAAATGGAGCCATGACGTTCCGTGGCACTTTGCCGCCAATGTC TTGGACTATGCGCGCATCATGAAGGGAACGGCCGAGTACATGGCCGACCAGTATGATGGCGAGGTGGCAGCTCTT TTGAAGCAAGACAAGGAAGACGAATGCTTTGGCCAAGACGGAGAATGGGTACAAAAGGCAATCAATGCCGTTTAC GCGGCCAAGGAACGCATTGTTGTCGGCGCGGGCAATGGCCAAGGAGCTCTGGCACAAGTCAAGCCAAAGCCTGGC AAGCAGGTTGCTGAAGCGGACTATTACTTTTACAGCTCGCCGCCACATCTCTATCTGACTCCTCTGGATATTCGT ATCCTCAAGACCAAGTACGGCACATTTTCGAATTTCCCCACCACTCTGTTGCCGAGAATCGAGCACATTGCCACG GGCATCGTGGTGGACGACGCACTGCGCAAGCGCAACAAGTATCTCGGCCACCTTCCTCGCGGCTGTGTCATTAGC CTCCTCGAATGTGACTGGACCGACATTGTTCCTGCCGAGACGCTTGAGACGTTTTCCAAGGACATTGAGGAGCGC CGGCGGCGGAACCGCGAAAAGGCAGCGTCGGAGGATCGTGAGCGGATACAGGCTGAGCGGCTCGACGCGCTGGCT ATGCGAGGATCCTTGGGCTTGCAAAGACCAGCCTCGCCACTGCAAGAGTCGCCGCGGATGGACCCTGCCGACTTT CAGCCCCTGAGCGGAGCGACGCCGCCCCATGCACGGCCCGGCTTTGCGCCGCTGGCAGACGTGTCGACGAGTCCG TCGCCGCAGCGGACCGTGTGGGGAACGCGGGCGGTGCCCTCATCGCCGGGCCTGGAAGCCGTGGCATCGTCGCCG ACACGACGCAGCACCTCTGACGATGGCTGGCTCAAGGATGATGAGTTTTTGGGCACGGCAGAGCTGGCGCTGCAG CTAGAGGCGATTGACGCGCTGGAATGCAATGAGTCTGCAGCGGGAGGAGCATCGGCGGCAACGGGTGGTGGTGGA GGGAAAAAGGGCAACAAGAAGAAGAAGAAGCAAAAGATTACGCTCATGAGCACTGGCGGGCGAAGAGGCAACTAG |