Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1102
Gene name
LocationContig_126:37750..38327
Strand+
Gene length (bp)577
Transcript length (bp)438
Coding sequence length (bp)438
Protein length (aa) 146

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04281 Tom22 Mitochondrial import receptor subunit Tom22 6.0E-43 1 121

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q07335|TOM22_NEUCR Mitochondrial import receptor subunit tom22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom22 PE=2 SV=1 1 145 9.0E-38
sp|O13813|TOM22_SCHPO Mitochondrial import receptor subunit tom22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom22 PE=3 SV=1 1 123 8.0E-15
sp|P49334|TOM22_YEAST Mitochondrial import receptor subunit TOM22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM22 PE=1 SV=3 35 129 4.0E-08

GO

GO Term Description Terminal node
GO:0006886 intracellular protein transport Yes
GO:0005741 mitochondrial outer membrane Yes
GO:0051641 cellular localization No
GO:0046907 intracellular transport No
GO:0070727 cellular macromolecule localization No
GO:0005575 cellular_component No
GO:0045184 establishment of protein localization No
GO:0098588 bounding membrane of organelle No
GO:0051649 establishment of localization in cell No
GO:0008150 biological_process No
GO:0016020 membrane No
GO:0071702 organic substance transport No
GO:0015031 protein transport No
GO:0033036 macromolecule localization No
GO:0051179 localization No
GO:0031968 organelle outer membrane No
GO:0110165 cellular anatomical entity No
GO:0006810 transport No
GO:0071705 nitrogen compound transport No
GO:0009987 cellular process No
GO:0031090 organelle membrane No
GO:0051234 establishment of localization No
GO:0019867 outer membrane No
GO:0031966 mitochondrial membrane No
GO:0008104 protein localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

Domain # Start End Length
1 79 98 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1102
MVTLTEVEDEHFQSGQPGPDQDEDDFTDTDFDPRNETFSERLYALRDIIPPTTRGWVSSRVEAFSSRAWSVLSFG
GRSVWVITTSALFFGVPFALSFSEDQQIMAMEQEYNMRQAGSELLTAGTEQDPANKDSTAMEDGKAKPAL*
Coding >OphauB2|1102
ATGGTTACCCTCACTGAGGTTGAGGACGAGCATTTCCAGAGCGGTCAGCCTGGCCCGGACCAGGACGAGGACGAT
TTTACAGACACGGATTTCGATCCCAGGAACGAGACTTTCTCAGAACGATTATACGCACTACGTGATATAATACCA
CCTACAACTCGAGGCTGGGTCTCGAGCCGCGTCGAAGCTTTCTCGAGTCGTGCATGGAGTGTTCTTTCTTTTGGC
GGTCGGAGTGTCTGGGTCATCACTACATCAGCTCTCTTTTTTGGTGTACCTTTTGCCCTTTCCTTCTCCGAAGAT
CAGCAGATTATGGCCATGGAACAGGAGTACAATATGCGACAGGCCGGGAGCGAGCTCCTTACCGCCGGCACCGAA
CAAGACCCAGCGAACAAGGACAGCACAGCAATGGAGGATGGGAAAGCGAAGCCTGCGCTGTAA
Transcript >OphauB2|1102
ATGGTTACCCTCACTGAGGTTGAGGACGAGCATTTCCAGAGCGGTCAGCCTGGCCCGGACCAGGACGAGGACGAT
TTTACAGACACGGATTTCGATCCCAGGAACGAGACTTTCTCAGAACGATTATACGCACTACGTGATATAATACCA
CCTACAACTCGAGGCTGGGTCTCGAGCCGCGTCGAAGCTTTCTCGAGTCGTGCATGGAGTGTTCTTTCTTTTGGC
GGTCGGAGTGTCTGGGTCATCACTACATCAGCTCTCTTTTTTGGTGTACCTTTTGCCCTTTCCTTCTCCGAAGAT
CAGCAGATTATGGCCATGGAACAGGAGTACAATATGCGACAGGCCGGGAGCGAGCTCCTTACCGCCGGCACCGAA
CAAGACCCAGCGAACAAGGACAGCACAGCAATGGAGGATGGGAAAGCGAAGCCTGCGCTGTAA
Gene >OphauB2|1102
ATGGTTACCCTCACTGAGGTTGAGGACGAGCATTTCCAGAGCGGTCAGCCTGGCCCGGACCAGGACGAGGACGAT
TTTACAGACACGGGTTCGTCTTCCACGAAAACCTTGCATCGGTCAAGAATAGAACGACTATGGCCTCTTGTTATG
ATCATCATTATTCAAGAAGCATCATTCCTGCTAACACGTCTTGAGTAAAAAAGACTCTGAAATCTCAAACGATTC
AGATTTCGATCCCAGGAACGAGACTTTCTCAGAACGATTATACGCACTACGTGATATAATACCACCTACAACTCG
AGGCTGGGTCTCGAGCCGCGTCGAAGCTTTCTCGAGTCGTGCATGGAGTGTTCTTTCTTTTGGCGGTCGGAGTGT
CTGGGTCATCACTACATCAGCTCTCTTTTTTGGTGTACCTTTTGCCCTTTCCTTCTCCGAAGATCAGCAGATTAT
GGCCATGGAACAGGAGTACAATATGCGACAGGCCGGGAGCGAGCTCCTTACCGCCGGCACCGAACAAGACCCAGC
GAACAAGGACAGCACAGCAATGGAGGATGGGAAAGCGAAGCCTGCGCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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