© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|1085 |
| Gene name | |
| Location | Contig_125:35921..37339 |
| Strand | + |
| Gene length (bp) | 1418 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00002 | 7tm_2 | 7 transmembrane receptor (Secretin family) | 2.4E-08 | 24 | 214 |
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 1.4E-05 | 84 | 209 |
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 2.7E-05 | 35 | 201 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54U75|CRLA_DICDI | Cyclic AMP receptor-like protein A OS=Dictyostelium discoideum GN=crlA PE=2 SV=1 | 15 | 212 | 5.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0004930 | G protein-coupled receptor activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0007165 | signal transduction | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0065007 | biological regulation | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 78 | 19 |
| 3 | 104 | 126 | 22 |
| 4 | 133 | 155 | 22 |
| 5 | 184 | 206 | 22 |
| 6 | 307 | 324 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|1085 MMISDGSSMLEVGSSLTPSEISALITIERTGAGLSMVAILLTLLSFGLFSKLRTMPNHFLALASLANAGASVASM MGYDGVDKGQDSSLCQAQAFIFEWFMQSDPWWSCAMAVNVLLVFFFNVNPVKIHRRLWIYCLVCFGGPFIPAVVL ISLQGDSRGAVYGDATLWCWIGPQWSLVRLYAYYIPIWLCLFTSLVIYVLVGCHVFRSRNQLRQVAGQMGSVPNS RSRVVLGSRDSAEERLTRDPDGCGTIMTELQHFEAVCRSSSQGRRGKSLLDRLHVGIVYQKIAQVWNSASLKLKC FDTVKRAYLRTSVIFGLAVIITWVPSSLNRLYSLQNDGRISFAYSVASG* |
| Coding | >OphauB2|1085 ATGATGATTAGCGACGGCAGCAGCATGCTCGAAGTCGGGTCGAGCCTGACGCCCAGCGAAATCTCGGCCCTCATC ACCATTGAGCGCACCGGCGCTGGCCTCTCCATGGTGGCTATTCTCTTGACGCTCCTGTCCTTTGGCCTCTTTTCC AAGCTACGAACCATGCCTAACCATTTTCTCGCCTTGGCTTCCCTGGCGAATGCTGGCGCCAGCGTCGCCTCAATG ATGGGATATGATGGCGTCGACAAGGGCCAAGACTCGTCTCTTTGCCAGGCGCAGGCCTTCATCTTTGAGTGGTTT ATGCAGTCGGACCCGTGGTGGTCGTGTGCCATGGCCGTCAACGTGCTTTTGGTCTTCTTCTTCAACGTCAATCCC GTCAAGATCCATAGGCGTCTCTGGATCTATTGCCTCGTGTGTTTTGGCGGCCCCTTTATCCCGGCCGTTGTTCTC ATTTCTCTTCAAGGAGACTCTCGAGGAGCCGTTTACGGCGATGCCACGCTTTGGTGCTGGATTGGACCGCAATGG AGTCTTGTTCGTCTCTACGCCTACTACATACCCATCTGGCTATGTCTCTTTACCTCGCTGGTTATTTATGTCTTG GTTGGCTGCCACGTCTTCCGCAGCCGCAACCAGCTTCGCCAAGTGGCAGGTCAGATGGGCAGTGTGCCGAATAGC CGGTCTAGGGTTGTCTTGGGGAGTAGAGACTCGGCTGAAGAGCGTCTGACTAGGGATCCCGACGGCTGCGGCACA ATCATGACGGAGCTACAGCATTTTGAGGCGGTTTGCCGGTCTAGCAGCCAGGGCCGACGCGGTAAATCTTTACTG GACAGACTTCACGTGGGTATCGTTTACCAAAAGATTGCTCAGGTGTGGAATTCGGCTAGTCTGAAGCTCAAGTGC TTTGACACGGTCAAGAGAGCCTACCTACGTACCAGCGTCATCTTTGGACTTGCCGTCATTATTACGTGGGTGCCA AGCTCTCTCAACAGGCTTTATAGCCTGCAGAATGATGGTCGCATCAGCTTTGCCTACAGCGTCGCTAGCGGCTAG |
| Transcript | >OphauB2|1085 ATGATGATTAGCGACGGCAGCAGCATGCTCGAAGTCGGGTCGAGCCTGACGCCCAGCGAAATCTCGGCCCTCATC ACCATTGAGCGCACCGGCGCTGGCCTCTCCATGGTGGCTATTCTCTTGACGCTCCTGTCCTTTGGCCTCTTTTCC AAGCTACGAACCATGCCTAACCATTTTCTCGCCTTGGCTTCCCTGGCGAATGCTGGCGCCAGCGTCGCCTCAATG ATGGGATATGATGGCGTCGACAAGGGCCAAGACTCGTCTCTTTGCCAGGCGCAGGCCTTCATCTTTGAGTGGTTT ATGCAGTCGGACCCGTGGTGGTCGTGTGCCATGGCCGTCAACGTGCTTTTGGTCTTCTTCTTCAACGTCAATCCC GTCAAGATCCATAGGCGTCTCTGGATCTATTGCCTCGTGTGTTTTGGCGGCCCCTTTATCCCGGCCGTTGTTCTC ATTTCTCTTCAAGGAGACTCTCGAGGAGCCGTTTACGGCGATGCCACGCTTTGGTGCTGGATTGGACCGCAATGG AGTCTTGTTCGTCTCTACGCCTACTACATACCCATCTGGCTATGTCTCTTTACCTCGCTGGTTATTTATGTCTTG GTTGGCTGCCACGTCTTCCGCAGCCGCAACCAGCTTCGCCAAGTGGCAGGTCAGATGGGCAGTGTGCCGAATAGC CGGTCTAGGGTTGTCTTGGGGAGTAGAGACTCGGCTGAAGAGCGTCTGACTAGGGATCCCGACGGCTGCGGCACA ATCATGACGGAGCTACAGCATTTTGAGGCGGTTTGCCGGTCTAGCAGCCAGGGCCGACGCGGTAAATCTTTACTG GACAGACTTCACGTGGGTATCGTTTACCAAAAGATTGCTCAGGTGTGGAATTCGGCTAGTCTGAAGCTCAAGTGC TTTGACACGGTCAAGAGAGCCTACCTACGTACCAGCGTCATCTTTGGACTTGCCGTCATTATTACGTGGGTGCCA AGCTCTCTCAACAGGCTTTATAGCCTGCAGAATGATGGTCGCATCAGCTTTGCCTACAGCGTCGCTAGCGGCTAG |
| Gene | >OphauB2|1085 ATGATGATTAGCGACGGCAGCAGCATGCTCGAAGTCGGGTCGAGCCTGACGCCCAGCGAAATCTCGGCCCTCATC ACCATTGAGCGCACCGGCGCTGGCCTCTCCATGGTGGCTATTCTCTTGACGCTCCTGTCCTTTGGCCTCTTTTCC AAGCTACGAACCATGCCTAACCATTTTCTCGCCTTGGCTTCCCTGGCGAATGCTGGCGCCAGCGTCGCCTCAATG ATGGGATATGATGGCGTCGACAAGGGCCAAGACTCGTCTCTTTGCCAGGCGCAGGCCTTCATCTTTGAGTGGTGT GTCTATTCTCCGTTTTGCTCGACTTGGTGTTAGCTGATGGGCCCAGGTTTATGCAGTCGGACCCGTGGTGGTCGT GTGCCATGGCCGTCAACGTGCTTTTGGTCTTCTTCTTCAACGTCAATCCCGTCAAGATCCATAGGCGTCTCTGGA TCTATTGCCTCGTGTGTTTTGGCGGCCCCTTTATCCCGGCCGTTGTTCTCATTTCTCTTCAAGGAGACTCTCGAG GAGCCGTTTACGGCGATGCCACGGTTTGTCTCTTCTCTTCCAAGCCACGCCCGCCACAGGCTATCGATAGAATTA GATAGGCTGACTGGAGGCAGCTTTGGTGCTGGATTGGACCGCAATGGAGTCTTGTTCGTCTCTACGCCTACTACA TACCCATCTGGCTATGTCTCTTTACCTCGCTGGTTATTTATGTCTTGGTTGGCTGCCACGTCTTCCGCAGCCGCA ACCAGCTTCGCCAAGTGGCAGGTCAGATGGGCAGTGTGCCGAATAGCCGGTCTAGGGTTGTCTTGGGGAGTAGAG ACTCGGCTGAAGAGGCACGCTTCTCTCACGCTCTCTCTTCCCTGTACATCATGTTTACTAACAATTCTGCCTGGC AGCGTCTGACTAGGGATCCCGACGGCTGCGGCACAATCATGACGGAGCTACAGGTAACGTCTGGTCCATCCCCTC GTAAATGCCCTACTCCAATTCCGCTCTCGGATACACACAGCCCAGGCTCTCGTTTGCCTTGGGTTGACTGCCACG TGGCAACGAGCAAAGGTATTGACGGCTTCCAGCATTTTGAGGCGGTTTGCCGGTCTAGCAGCCAGGGCCGACGCG GTAAATCTTTACTGGACAGACTTCACGTGGGTATCGTTTACCAAAAGATTGCTCAGGTGTGGAATTCGGCTAGTC TGAAGCTCAAGTGCTTTGACACGGTCAAGAGAGCCTACCTACGTACCAGCGTCATCTTTGGACTTGCCGTCATTA TTACGTGGGTGCCAAGCTCTCTCAACAGGCTTTATAGCCTGCAGAATGATGGTCGCATCAGCTTTGCCTACAGCG TCGCTAGCGGGTTTGTGCTTCCTCTGCAAGGAGTCTGGAACGCCATCATTTACTTTACGACAAGCTAG |