Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|1055
Gene name
LocationContig_124:21256..21777
Strand+
Gene length (bp)521
Transcript length (bp)438
Coding sequence length (bp)438
Protein length (aa) 146

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05336 rhaM L-rhamnose mutarotase 8.1E-34 33 143

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|B2JLI5|RHAM_BURP8 L-rhamnose mutarotase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rhaM PE=3 SV=1 40 119 9.0E-11
sp|A6KWR4|RHAM_BACV8 L-rhamnose mutarotase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rhaM PE=3 SV=1 32 110 1.0E-09
sp|Q0BA68|RHAM_BURCM L-rhamnose mutarotase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rhaM PE=3 SV=2 34 132 4.0E-09
sp|C3MFZ6|RHAM_RHISN L-rhamnose mutarotase OS=Rhizobium sp. (strain NGR234) GN=rhaM PE=3 SV=1 33 86 7.0E-09
sp|B1KAV4|RHAM_BURCC L-rhamnose mutarotase OS=Burkholderia cenocepacia (strain MC0-3) GN=rhaM PE=3 SV=1 34 132 9.0E-09
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Swissprot ID Swissprot Description Start End E-value
sp|B2JLI5|RHAM_BURP8 L-rhamnose mutarotase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rhaM PE=3 SV=1 40 119 9.0E-11
sp|A6KWR4|RHAM_BACV8 L-rhamnose mutarotase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rhaM PE=3 SV=1 32 110 1.0E-09
sp|Q0BA68|RHAM_BURCM L-rhamnose mutarotase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rhaM PE=3 SV=2 34 132 4.0E-09
sp|C3MFZ6|RHAM_RHISN L-rhamnose mutarotase OS=Rhizobium sp. (strain NGR234) GN=rhaM PE=3 SV=1 33 86 7.0E-09
sp|B1KAV4|RHAM_BURCC L-rhamnose mutarotase OS=Burkholderia cenocepacia (strain MC0-3) GN=rhaM PE=3 SV=1 34 132 9.0E-09
sp|C6DJR0|RHAM_PECCP L-rhamnose mutarotase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhaM PE=3 SV=1 33 135 1.0E-08
sp|A5FC30|RHAM_FLAJ1 L-rhamnose mutarotase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rhaM PE=3 SV=1 33 119 1.0E-08
sp|A1WJR4|RHAM_VEREI L-rhamnose mutarotase OS=Verminephrobacter eiseniae (strain EF01-2) GN=rhaM PE=3 SV=1 43 110 2.0E-08
sp|B1YMY7|RHAM_BURA4 L-rhamnose mutarotase OS=Burkholderia ambifaria (strain MC40-6) GN=rhaM PE=3 SV=1 34 137 2.0E-08
sp|A6X4W8|RHAM_OCHA4 L-rhamnose mutarotase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rhaM PE=3 SV=1 31 137 2.0E-08
sp|B1Y3E6|RHAM_LEPCP L-rhamnose mutarotase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rhaM PE=3 SV=1 33 128 2.0E-08
sp|Q92S07|RHAM_RHIME L-rhamnose mutarotase OS=Rhizobium meliloti (strain 1021) GN=rhaM PE=3 SV=1 33 119 2.0E-08
sp|A6LQL0|RHAM_CLOB8 L-rhamnose mutarotase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rhaM PE=3 SV=1 35 119 3.0E-08
sp|Q98B72|RHAM_RHILO L-rhamnose mutarotase OS=Rhizobium loti (strain MAFF303099) GN=rhaM PE=3 SV=1 33 145 4.0E-08
sp|Q28P47|RHAM_JANSC L-rhamnose mutarotase OS=Jannaschia sp. (strain CCS1) GN=rhaM PE=3 SV=1 33 119 5.0E-08
sp|A0KDV0|RHAM_BURCH L-rhamnose mutarotase OS=Burkholderia cenocepacia (strain HI2424) GN=rhaM PE=3 SV=1 38 132 6.0E-08
sp|Q71VR6|RHAM_LISMF L-rhamnose mutarotase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rhaM PE=3 SV=1 33 111 6.0E-08
sp|Q1BGJ2|RHAM_BURCA L-rhamnose mutarotase OS=Burkholderia cenocepacia (strain AU 1054) GN=rhaM PE=3 SV=1 38 132 6.0E-08
sp|Q8Y3I9|RHAM_LISMO L-rhamnose mutarotase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rhaM PE=3 SV=1 33 111 1.0E-07
sp|Q8A044|RHAM_BACTN L-rhamnose mutarotase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=rhaM PE=3 SV=1 32 110 1.0E-07
sp|A9CFA8|RHAM_AGRFC L-rhamnose mutarotase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rhaM PE=3 SV=1 38 119 2.0E-07
sp|A6U608|RHAM_SINMW L-rhamnose mutarotase OS=Sinorhizobium medicae (strain WSM419) GN=rhaM PE=3 SV=1 33 119 3.0E-07
sp|Q8ESX3|RHAM_OCEIH L-rhamnose mutarotase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rhaM PE=3 SV=1 46 111 3.0E-07
sp|Q926R3|RHAM_LISIN L-rhamnose mutarotase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rhaM PE=3 SV=1 33 111 4.0E-07
sp|A5G2T9|RHAM_ACICJ L-rhamnose mutarotase OS=Acidiphilium cryptum (strain JF-5) GN=rhaM PE=3 SV=1 33 111 4.0E-07
sp|A8LS71|RHAM_DINSH L-rhamnose mutarotase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) GN=rhaM PE=3 SV=2 33 117 5.0E-07
sp|Q6DA26|RHAM_PECAS L-rhamnose mutarotase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rhaM PE=3 SV=1 33 135 1.0E-06
sp|B9K2Z2|RHAM_AGRVS L-rhamnose mutarotase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rhaM PE=3 SV=1 33 137 1.0E-06
sp|O05263|RHAM_BACSU L-rhamnose mutarotase OS=Bacillus subtilis (strain 168) GN=rhaM PE=3 SV=1 32 111 2.0E-06
sp|Q65Q29|RHAM_MANSM L-rhamnose mutarotase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rhaM PE=3 SV=2 33 110 3.0E-06
sp|Q1WRE3|RHAM_LACS1 L-rhamnose mutarotase OS=Lactobacillus salivarius (strain UCC118) GN=rhaM PE=3 SV=1 33 110 4.0E-06
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GO

GO Term Description Terminal node
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No
GO:0016853 isomerase activity No
GO:0016854 racemase and epimerase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|1055
MWQPLSPTETPRSPPAVDSPTSTSSRKKNPGRRFAHVIKLKRGCVDEYKACHGSIWPEVAKQIKDCGLEDYSIWY
DDKTSMLFSSFRYIGYDYAGDMQRMAENAKVREWWRMTDSFQESLVEGATSSETGEPSWWKPMEELFYQA*
Coding >OphauB2|1055
ATGTGGCAGCCACTATCGCCGACGGAGACGCCGCGGTCACCACCGGCAGTTGATTCACCAACGTCGACGTCGAGC
CGCAAGAAGAATCCAGGCCGGCGATTTGCGCACGTTATTAAGCTGAAGCGCGGCTGCGTTGACGAGTACAAGGCT
TGCCATGGTAGCATTTGGCCCGAGGTGGCCAAGCAGATCAAGGACTGTGGGCTTGAAGACTACAGCATCTGGTAT
GACGACAAGACGAGCATGCTCTTTAGCTCCTTTAGGTATATTGGGTACGACTACGCGGGTGACATGCAGCGCATG
GCGGAGAATGCAAAGGTGCGCGAATGGTGGCGCATGACGGATAGTTTCCAGGAGAGTCTTGTTGAGGGAGCCACG
AGCTCCGAGACGGGCGAGCCCAGCTGGTGGAAGCCCATGGAAGAGCTCTTCTACCAGGCCTGA
Transcript >OphauB2|1055
ATGTGGCAGCCACTATCGCCGACGGAGACGCCGCGGTCACCACCGGCAGTTGATTCACCAACGTCGACGTCGAGC
CGCAAGAAGAATCCAGGCCGGCGATTTGCGCACGTTATTAAGCTGAAGCGCGGCTGCGTTGACGAGTACAAGGCT
TGCCATGGTAGCATTTGGCCCGAGGTGGCCAAGCAGATCAAGGACTGTGGGCTTGAAGACTACAGCATCTGGTAT
GACGACAAGACGAGCATGCTCTTTAGCTCCTTTAGGTATATTGGGTACGACTACGCGGGTGACATGCAGCGCATG
GCGGAGAATGCAAAGGTGCGCGAATGGTGGCGCATGACGGATAGTTTCCAGGAGAGTCTTGTTGAGGGAGCCACG
AGCTCCGAGACGGGCGAGCCCAGCTGGTGGAAGCCCATGGAAGAGCTCTTCTACCAGGCCTGA
Gene >OphauB2|1055
ATGTGGCAGCCACTATCGCCGACGGAGACGCCGCGGTCACCACCGGCAGTTGATTCACCAACGTCGACGTCGAGC
CGCAAGAAGAATCCAGGCCGGCGATTTGCGCACGTTATTAAGCTGAAGCGCGGCTGCGTTGACGAGTACAAGGCT
TGCCATGGTAGCATTTGGCCCGAGGTGGCCAAGCAGATCAAGGACTGTGGGCTTGAAGACTGTGAGAGATTTTCC
CCTCTTGCTCTTGGCTCGCCGTGGCATGCAACAGCAGCAAGGCTGACACGCCATGGCGACGCTTGACAGACAGCA
TCTGGTATGACGACAAGACGAGCATGCTCTTTAGCTCCTTTAGGTATATTGGGTACGACTACGCGGGTGACATGC
AGCGCATGGCGGAGAATGCAAAGGTGCGCGAATGGTGGCGCATGACGGATAGTTTCCAGGAGAGTCTTGTTGAGG
GAGCCACGAGCTCCGAGACGGGCGAGCCCAGCTGGTGGAAGCCCATGGAAGAGCTCTTCTACCAGGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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