Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|103
Gene name
LocationContig_1:266660..267866
Strand-
Gene length (bp)1206
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e 7.7E-23 154 284

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O74464|RM22_SCHPO 54S ribosomal protein L22, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl22 PE=3 SV=1 152 322 7.0E-11
sp|P53881|RM22_YEAST 54S ribosomal protein L22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL22 PE=1 SV=2 131 323 1.0E-07
sp|A8LM59|RL22_DINSH 50S ribosomal protein L22 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) GN=rplV PE=3 SV=1 145 285 7.0E-06

GO

GO Term Description Terminal node
GO:0003735 structural constituent of ribosome Yes
GO:0005840 ribosome Yes
GO:0006412 translation Yes
GO:0043228 non-membrane-bounded organelle No
GO:0110165 cellular anatomical entity No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0043226 organelle No
GO:1901576 organic substance biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043603 cellular amide metabolic process No
GO:0003674 molecular_function No
GO:0009059 macromolecule biosynthetic process No
GO:0005198 structural molecule activity No
GO:0008150 biological_process No
GO:0005575 cellular_component No
GO:0043170 macromolecule metabolic process No
GO:0006518 peptide metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0043604 amide biosynthetic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:1901566 organonitrogen compound biosynthetic process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0009058 biosynthetic process No
GO:0043043 peptide biosynthetic process No
GO:0019538 protein metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0043229 intracellular organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|103
MSPSPCSHASSPFYTQHRSISFGALWKKWRGKKDEGVAAELDDPQIRKKFLQKTSERGSIASDNIFNEEIKSASD
DRDSADLDNKSSKLSEEMQARKHFSNVPRTHENTAIVLDPDPASRIRWLRKKVIQMVRNPNSVTPEQRIRALERE
CTHSSHFMATSTKKLCMLSRQIAGMPVDKAIDQMRWSKKKYSKEILYYLEEARDLAIAKHGMGLGKVNGELFKEP
RKILTKDGKWISISDPTRIYIAQSWVGRGGYLLRRPDRKGRGRIGTISRPSTKITFILKEEKTRIRECAERDAKK
AAKGPWVHHPNRSLIGQRPYYSW*
Coding >OphauB2|103
ATGAGTCCTTCGCCGTGCTCACACGCCTCATCACCCTTTTATACCCAACACCGCTCCATCTCATTCGGCGCTCTC
TGGAAGAAATGGAGGGGCAAAAAGGACGAGGGCGTAGCAGCCGAGCTCGACGACCCCCAAATACGCAAAAAATTC
CTCCAAAAGACGTCGGAGCGCGGCTCCATCGCCTCTGACAACATCTTCAACGAGGAAATCAAGTCGGCTTCAGAT
GACCGAGACTCTGCCGACCTTGACAACAAGTCTTCCAAACTCTCTGAGGAGATGCAAGCCCGCAAGCACTTTTCC
AACGTCCCCAGGACTCACGAAAACACGGCCATTGTGCTTGACCCCGATCCCGCCTCCCGTATCCGCTGGCTTCGC
AAAAAGGTGATTCAAATGGTTCGCAACCCAAACTCTGTTACTCCCGAGCAGCGGATCCGCGCCTTGGAGCGCGAA
TGTACCCACTCGAGCCACTTCATGGCAACTTCGACCAAGAAACTCTGCATGCTCTCCCGCCAGATTGCCGGCATG
CCCGTTGACAAGGCCATTGACCAGATGCGCTGGTCAAAGAAAAAGTATTCCAAGGAAATTCTCTACTATCTGGAA
GAAGCTCGCGATCTCGCCATTGCCAAACACGGCATGGGACTGGGCAAAGTCAATGGCGAGCTCTTCAAGGAACCT
CGCAAAATCTTGACAAAAGATGGCAAATGGATCAGCATTTCTGACCCTACCCGCATCTACATTGCCCAGTCGTGG
GTCGGCAGGGGCGGATACCTGCTTCGCCGTCCAGATCGCAAGGGCCGTGGTAGAATAGGCACTATTTCACGTCCA
AGCACAAAAATCACCTTTATCCTCAAAGAGGAAAAAACAAGGATACGCGAGTGTGCAGAGCGCGATGCGAAAAAG
GCTGCAAAGGGCCCATGGGTCCATCATCCCAACCGCTCCCTCATTGGCCAGCGGCCCTATTACTCATGGTGA
Transcript >OphauB2|103
ATGAGTCCTTCGCCGTGCTCACACGCCTCATCACCCTTTTATACCCAACACCGCTCCATCTCATTCGGCGCTCTC
TGGAAGAAATGGAGGGGCAAAAAGGACGAGGGCGTAGCAGCCGAGCTCGACGACCCCCAAATACGCAAAAAATTC
CTCCAAAAGACGTCGGAGCGCGGCTCCATCGCCTCTGACAACATCTTCAACGAGGAAATCAAGTCGGCTTCAGAT
GACCGAGACTCTGCCGACCTTGACAACAAGTCTTCCAAACTCTCTGAGGAGATGCAAGCCCGCAAGCACTTTTCC
AACGTCCCCAGGACTCACGAAAACACGGCCATTGTGCTTGACCCCGATCCCGCCTCCCGTATCCGCTGGCTTCGC
AAAAAGGTGATTCAAATGGTTCGCAACCCAAACTCTGTTACTCCCGAGCAGCGGATCCGCGCCTTGGAGCGCGAA
TGTACCCACTCGAGCCACTTCATGGCAACTTCGACCAAGAAACTCTGCATGCTCTCCCGCCAGATTGCCGGCATG
CCCGTTGACAAGGCCATTGACCAGATGCGCTGGTCAAAGAAAAAGTATTCCAAGGAAATTCTCTACTATCTGGAA
GAAGCTCGCGATCTCGCCATTGCCAAACACGGCATGGGACTGGGCAAAGTCAATGGCGAGCTCTTCAAGGAACCT
CGCAAAATCTTGACAAAAGATGGCAAATGGATCAGCATTTCTGACCCTACCCGCATCTACATTGCCCAGTCGTGG
GTCGGCAGGGGCGGATACCTGCTTCGCCGTCCAGATCGCAAGGGCCGTGGTAGAATAGGCACTATTTCACGTCCA
AGCACAAAAATCACCTTTATCCTCAAAGAGGAAAAAACAAGGATACGCGAGTGTGCAGAGCGCGATGCGAAAAAG
GCTGCAAAGGGCCCATGGGTCCATCATCCCAACCGCTCCCTCATTGGCCAGCGGCCCTATTACTCATGGTGA
Gene >OphauB2|103
ATGAGTGTCCGTTTTGCCGCGCGCCGCCTAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACACACACACAAAAAAAAAGAAGCATCCCACGCTTAC
ACCACCCTAGGTCCTTCGCCGTGCTCACACGCCTCATCACCCTTTTATACCCAACACCGCTCCATCTCATTCGGC
GCTCTCTGGAAGAAATGGAGGGGCAAAAAGGACGAGGGCGTAGCAGCCGAGCTCGACGACCCCCAAATACGCAAA
AAATTCCTCCAAAAGACGTCGGAGCGCGGCTCCATCGCCTCTGACAACATCTTCAACGAGGAAATCAAGTCGGCT
TCAGATGACCGAGACTCTGCCGACCTTGACAACAAGTCTTCCAAACTCTCTGAGGAGATGCAAGCCCGCAAGCAC
TTTTCCAACGTCCCCAGGACTCACGAAAACACGGCCATTGTGCTTGACCCCGATCCCGCCTCCCGTATCCGCTGG
CTTCGCAAAAAGGTGATTCAAATGGTTCGCAACCCAAACTCTGTTACTCCCGAGCAGCGGATCCGCGCCTTGGAG
CGCGAATGTACCCACTCGAGCCACTTCATGGCAACTTCGACCAAGAAACTCTGCATGCTCTCCCGCCAGATTGCC
GGCATGCCCGTTGACAAGGCCATTGACCAGATGCGCTGGTCAAAGAAAAAGTATTCCAAGGAAATTCTCTACTAT
CTGGAAGAAGCTCGCGATCTCGCCATTGCCAAACACGGCATGGGACTGGGCAAAGTCAATGGCGAGCTCTTCAAG
GAACCTCGCAAAATCTTGACAAAAGATGGCAAATGGATCAGCATTTCTGACCCTACCCGCATCTACATTGCCCAG
TCGTGGGTCGGCAGGGGCGGATACCTGCTTCGCCGTCCAGATCGCAAGGGCCGTGGTAGAATAGGCACTATTTCA
CGTCCAAGCACAAGTGCGTACCCAGACCCTTGTATCCATTTAGTCTCAGACATGCTGCCCTAGCCACCATACTCA
CTGACCCGTCTCACAGAAATCACCTTTATCCTCAAAGAGGAAAAAACAAGGATACGCGAGTGTGCAGAGCGCGAT
GCGAAAAAGGCTGCAAAGGGCCCATGGGTCCATCATCCCAACCGCTCCCTCATTGGCCAGCGGCCCTATTACTCA
TGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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