Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00271
Short nameHelicase_C
Long nameHelicase conserved C-terminal domain
Proteins with at least one of this domain68
Total domain count68
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
OphauB2|100 PF00270 DEAD DEAD/DEAH box helicase 1.6E-10 694 850
PF13401 AAA_22 AAA domain 2.9E-07 701 846
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-14 956 1078
PF04408 HA2 Helicase associated domain (HA2) 1.3E-13 1143 1222
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.6E-07 1314 1390
OphauB2|1094 PF00270 DEAD DEAD/DEAH box helicase 2.6E-49 173 343
PF04851 ResIII Type III restriction enzyme, res subunit 1.3E-05 193 336
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-31 385 491
OphauB2|1165 PF04851 ResIII Type III restriction enzyme, res subunit 1.9E-24 17 179
PF00270 DEAD DEAD/DEAH box helicase 4.3E-11 21 182
PF00271 Helicase_C Helicase conserved C-terminal domain 7.8E-13 258 356
OphauB2|1222 PF00270 DEAD DEAD/DEAH box helicase 8.9E-46 106 270
PF04851 ResIII Type III restriction enzyme, res subunit 4.9E-06 126 267
PF00271 Helicase_C Helicase conserved C-terminal domain 6.9E-24 357 452
PF08147 DBP10CT DBP10CT (NUC160) domain 2.0E-19 732 799
OphauB2|123 PF00270 DEAD DEAD/DEAH box helicase 5.1E-16 724 885
PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-11 727 884
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-07 1233 1305
OphauB2|1617 PF00270 DEAD DEAD/DEAH box helicase 8.1E-47 206 392
PF00271 Helicase_C Helicase conserved C-terminal domain 3.1E-31 427 536
OphauB2|1625 PF00270 DEAD DEAD/DEAH box helicase 1.4E-08 317 482
PF00271 Helicase_C Helicase conserved C-terminal domain 3.9E-12 625 714
PF04408 HA2 Helicase associated domain (HA2) 2.1E-21 776 892
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 7.8E-10 960 1079
OphauB2|1732 PF00270 DEAD DEAD/DEAH box helicase 3.6E-42 53 215
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-32 254 362
OphauB2|184 PF00176 SNF2-rel_dom SNF2-related domain 1.2E-41 980 1275
PF04851 ResIII Type III restriction enzyme, res subunit 1.6E-05 980 1148
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-21 1330 1437
OphauB2|1852 PF18149 Helicase_PWI N-terminal helicase PWI domain 4.1E-32 289 402
PF04851 ResIII Type III restriction enzyme, res subunit 2.8E-13 520 695
PF00270 DEAD DEAD/DEAH box helicase 5.0E-29 521 696
PF00271 Helicase_C Helicase conserved C-terminal domain 5.5E-07 758 899
PF02889 Sec63 Sec63 Brl domain 3.9E-89 1021 1326
PF00270 DEAD DEAD/DEAH box helicase 2.7E-17 1372 1534
PF02889 Sec63 Sec63 Brl domain 1.2E-65 1856 2179
OphauB2|1929 PF00270 DEAD DEAD/DEAH box helicase 1.8E-47 173 344
PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-24 386 491
PF13959 DUF4217 Domain of unknown function (DUF4217) 1.9E-20 533 593
OphauB2|2015 PF00270 DEAD DEAD/DEAH box helicase 2.9E-06 378 531
PF13401 AAA_22 AAA domain 4.4E-06 388 505
PF00271 Helicase_C Helicase conserved C-terminal domain 8.3E-14 576 703
PF04408 HA2 Helicase associated domain (HA2) 3.6E-18 765 839
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.8E-15 917 995
OphauB2|2149 PF00270 DEAD DEAD/DEAH box helicase 5.9E-07 268 418
PF00271 Helicase_C Helicase conserved C-terminal domain 7.2E-14 458 589
PF04408 HA2 Helicase associated domain (HA2) 4.5E-21 655 738
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 7.6E-19 797 873
OphauB2|221 PF00270 DEAD DEAD/DEAH box helicase 1.5E-47 276 446
PF00271 Helicase_C Helicase conserved C-terminal domain 8.2E-28 491 592
OphauB2|2651 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.8E-07 260 317
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-15 358 408
PF00176 SNF2-rel_dom SNF2-related domain 4.7E-60 461 728
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-18 756 868
PF13907 DUF4208 Domain of unknown function (DUF4208) 1.7E-18 1524 1620
OphauB2|2676 PF00270 DEAD DEAD/DEAH box helicase 1.4E-33 40 236
PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-20 284 395
PF13959 DUF4217 Domain of unknown function (DUF4217) 7.9E-20 443 501
OphauB2|2680 PF00270 DEAD DEAD/DEAH box helicase 3.0E-08 76 226
PF13401 AAA_22 AAA domain 1.6E-06 80 218
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-10 265 405
PF04408 HA2 Helicase associated domain (HA2) 2.2E-17 468 556
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.4E-21 623 698
OphauB2|2724 PF00270 DEAD DEAD/DEAH box helicase 7.1E-42 92 292
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-18 402 483
PF13959 DUF4217 Domain of unknown function (DUF4217) 2.1E-16 551 610
OphauB2|2753 PF00270 DEAD DEAD/DEAH box helicase 2.5E-40 101 287
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-20 331 446
OphauB2|2770 PF00176 SNF2-rel_dom SNF2-related domain 3.0E-73 370 737
PF00270 DEAD DEAD/DEAH box helicase 9.7E-06 436 592
PF00271 Helicase_C Helicase conserved C-terminal domain 8.3E-12 914 1015
OphauB2|2808 PF00271 Helicase_C Helicase conserved C-terminal domain 5.7E-16 45 153
OphauB2|2813 PF00575 S1 S1 RNA binding domain 4.3E-10 255 321
PF00270 DEAD DEAD/DEAH box helicase 8.9E-06 560 710
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-13 754 883
PF04408 HA2 Helicase associated domain (HA2) 2.3E-22 945 1033
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 5.8E-22 1091 1166
OphauB2|2894 PF00270 DEAD DEAD/DEAH box helicase 7.1E-18 166 312
PF04851 ResIII Type III restriction enzyme, res subunit 9.9E-05 176 311
PF00271 Helicase_C Helicase conserved C-terminal domain 8.3E-06 487 563
PF13234 rRNA_proc-arch rRNA-processing arch domain 7.1E-90 617 894
PF08148 DSHCT DSHCT (NUC185) domain 1.4E-45 922 1091
OphauB2|3047 PF00176 SNF2-rel_dom SNF2-related domain 6.6E-51 504 789
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-15 862 974
OphauB2|3470 PF00270 DEAD DEAD/DEAH box helicase 2.6E-46 69 235
PF04851 ResIII Type III restriction enzyme, res subunit 9.9E-05 89 229
PF00271 Helicase_C Helicase conserved C-terminal domain 7.3E-31 275 380
OphauB2|3711 PF00176 SNF2-rel_dom SNF2-related domain 2.0E-71 420 732
PF04851 ResIII Type III restriction enzyme, res subunit 8.0E-07 420 600
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-15 767 866
OphauB2|3797 PF08797 HIRAN HIRAN domain 7.1E-25 169 285
PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-05 424 686
PF00176 SNF2-rel_dom SNF2-related domain 2.6E-69 429 821
PF00271 Helicase_C Helicase conserved C-terminal domain 3.1E-13 984 1087
OphauB2|3884 PF08797 HIRAN HIRAN domain 2.0E-17 72 157
PF00176 SNF2-rel_dom SNF2-related domain 9.2E-75 280 604
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 8.4E-09 644 689
PF13639 zf-RING_2 Ring finger domain 1.3E-08 646 685
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.1E-08 647 684
PF13445 zf-RING_UBOX RING-type zinc-finger 1.3E-08 647 682
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 4.3E-11 647 684
PF14634 zf-RING_5 zinc-RING finger domain 7.9E-07 647 685
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-14 714 827
OphauB2|3897 PF00270 DEAD DEAD/DEAH box helicase 2.4E-26 285 471
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-08 288 468
PF02889 Sec63 Sec63 Brl domain 5.4E-80 796 1099
PF00270 DEAD DEAD/DEAH box helicase 4.0E-22 1145 1309
PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-09 1156 1294
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-06 1422 1508
PF02889 Sec63 Sec63 Brl domain 1.7E-23 1637 1795
OphauB2|4321 PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-07 813 985
PF00270 DEAD DEAD/DEAH box helicase 4.1E-21 817 989
PF00271 Helicase_C Helicase conserved C-terminal domain 6.9E-13 1040 1135
PF16124 RecQ_Zn_bind RecQ zinc-binding 2.8E-14 1148 1213
PF09382 RQC RQC domain 1.8E-16 1218 1330
OphauB2|4324 PF00270 DEAD DEAD/DEAH box helicase 1.6E-15 174 332
PF04851 ResIII Type III restriction enzyme, res subunit 7.2E-21 174 327
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-20 527 635
OphauB2|4351 PF08839 CDT1 DNA replication factor CDT1 like 2.0E-05 50 138
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-08 289 488
PF00270 DEAD DEAD/DEAH box helicase 1.8E-24 351 525
PF00271 Helicase_C Helicase conserved C-terminal domain 4.1E-10 581 691
PF09369 MZB MrfA Zn-binding domain 6.1E-21 955 1044
OphauB2|4397 PF00270 DEAD DEAD/DEAH box helicase 1.6E-26 184 400
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-24 472 571
OphauB2|466 PF17911 Ski2_N Ski2 N-terminal region 3.0E-36 55 199
PF00270 DEAD DEAD/DEAH box helicase 3.3E-17 303 449
PF00271 Helicase_C Helicase conserved C-terminal domain 5.8E-06 641 746
PF13234 rRNA_proc-arch rRNA-processing arch domain 8.7E-28 804 1069
PF08148 DSHCT DSHCT (NUC185) domain 1.1E-47 1096 1263
OphauB2|4883 PF08658 Rad54_N Rad54 N terminal 9.9E-48 28 191
PF04851 ResIII Type III restriction enzyme, res subunit 4.2E-10 213 391
PF00176 SNF2-rel_dom SNF2-related domain 5.8E-63 216 523
PF00271 Helicase_C Helicase conserved C-terminal domain 4.1E-15 564 673
OphauB2|5066 PF00270 DEAD DEAD/DEAH box helicase 5.5E-38 80 248
PF04851 ResIII Type III restriction enzyme, res subunit 2.4E-07 96 243
PF00271 Helicase_C Helicase conserved C-terminal domain 9.1E-25 286 394
OphauB2|5096 PF04851 ResIII Type III restriction enzyme, res subunit 3.3E-05 357 512
PF00176 SNF2-rel_dom SNF2-related domain 1.1E-62 364 678
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.8E-06 717 768
PF13445 zf-RING_UBOX RING-type zinc-finger 5.9E-06 717 766
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-15 924 1038
OphauB2|5123 PF00271 Helicase_C Helicase conserved C-terminal domain 5.2E-12 241 363
PF04408 HA2 Helicase associated domain (HA2) 4.4E-16 425 516
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 2.0E-15 580 657
OphauB2|5186 PF12054 DUF3535 Domain of unknown function (DUF3535) 4.2E-126 633 1087
PF00176 SNF2-rel_dom SNF2-related domain 2.5E-63 1319 1606
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-18 1666 1767
OphauB2|520 PF00270 DEAD DEAD/DEAH box helicase 2.3E-47 600 770
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-26 814 921
OphauB2|5559 PF00270 DEAD DEAD/DEAH box helicase 1.3E-05 131 300
PF00271 Helicase_C Helicase conserved C-terminal domain 3.4E-10 350 476
PF04408 HA2 Helicase associated domain (HA2) 1.2E-11 542 623
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.9E-08 721 773
OphauB2|5631 PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-08 363 474
OphauB2|5721 PF00270 DEAD DEAD/DEAH box helicase 1.7E-43 159 349
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-26 386 498
OphauB2|5823 PF00270 DEAD DEAD/DEAH box helicase 8.3E-10 591 752
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-14 834 954
PF04408 HA2 Helicase associated domain (HA2) 1.6E-14 1019 1108
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 2.8E-13 1178 1279
OphauB2|5870 PF07529 HSA HSA domain 2.7E-05 425 487
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-08 926 1086
PF00176 SNF2-rel_dom SNF2-related domain 6.8E-71 945 1225
PF00271 Helicase_C Helicase conserved C-terminal domain 3.4E-18 1488 1600
OphauB2|6292 PF00270 DEAD DEAD/DEAH box helicase 1.5E-16 7 163
PF04851 ResIII Type III restriction enzyme, res subunit 6.5E-11 7 161
PF00271 Helicase_C Helicase conserved C-terminal domain 8.8E-15 387 467
PF03368 Dicer_dimer Dicer dimerisation domain 1.5E-20 536 627
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 1.5E-10 918 1044
PF00636 Ribonuclease_3 Ribonuclease III domain 2.6E-18 922 1034
PF00636 Ribonuclease_3 Ribonuclease III domain 9.7E-16 1111 1254
OphauB2|6371 PF00270 DEAD DEAD/DEAH box helicase 7.6E-41 123 297
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-05 144 292
PF00271 Helicase_C Helicase conserved C-terminal domain 5.5E-29 345 449
OphauB2|6379 PF07529 HSA HSA domain 5.6E-18 435 505
PF00176 SNF2-rel_dom SNF2-related domain 2.0E-78 605 898
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-18 922 1035
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 5.8E-16 1141 1199
PF00439 Bromodomain Bromodomain 1.6E-18 1342 1413
OphauB2|6423 PF04851 ResIII Type III restriction enzyme, res subunit 3.0E-05 164 336
PF00176 SNF2-rel_dom SNF2-related domain 5.4E-51 181 447
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 1.3E-06 540 675
PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-18 546 653
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 9.2E-23 780 839
OphauB2|7047 PF00176 SNF2-rel_dom SNF2-related domain 3.8E-69 255 586
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-05 275 438
PF00271 Helicase_C Helicase conserved C-terminal domain 8.2E-15 851 961
OphauB2|7116 PF15446 zf-PHD-like PHD/FYVE-zinc-finger like domain 3.4E-64 426 594
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.2E-06 624 647
PF00176 SNF2-rel_dom SNF2-related domain 3.1E-28 812 942
PF00176 SNF2-rel_dom SNF2-related domain 1.8E-08 950 1046
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 3.9E-08 989 1210
PF00271 Helicase_C Helicase conserved C-terminal domain 2.6E-18 1073 1184
OphauB2|7188 PF04851 ResIII Type III restriction enzyme, res subunit 6.8E-14 141 311
PF00270 DEAD DEAD/DEAH box helicase 1.8E-12 154 311
PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-18 482 598
PF03368 Dicer_dimer Dicer dimerisation domain 4.8E-21 677 763
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 3.1E-09 1096 1214
PF00636 Ribonuclease_3 Ribonuclease III domain 1.2E-20 1105 1211
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 6.3E-16 1278 1431
PF00636 Ribonuclease_3 Ribonuclease III domain 1.6E-20 1298 1417
OphauB2|7194 PF00270 DEAD DEAD/DEAH box helicase 2.6E-45 74 243
PF04851 ResIII Type III restriction enzyme, res subunit 1.6E-07 78 236
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-25 280 390
PF13959 DUF4217 Domain of unknown function (DUF4217) 2.4E-23 432 492
OphauB2|7199 PF04851 ResIII Type III restriction enzyme, res subunit 3.5E-08 150 317
PF00176 SNF2-rel_dom SNF2-related domain 4.6E-68 167 440
PF00271 Helicase_C Helicase conserved C-terminal domain 7.6E-18 597 706
OphauB2|7480 PF00270 DEAD DEAD/DEAH box helicase 1.2E-16 28 194
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-14 274 366
PF16124 RecQ_Zn_bind RecQ zinc-binding 2.1E-12 379 441
OphauB2|7519 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 1.3E-33 101 225
PF04851 ResIII Type III restriction enzyme, res subunit 9.4E-15 338 495
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 1.4E-124 521 756
PF00271 Helicase_C Helicase conserved C-terminal domain 8.2E-11 565 671
OphauB2|7577 PF00270 DEAD DEAD/DEAH box helicase 1.6E-47 231 409
PF00271 Helicase_C Helicase conserved C-terminal domain 4.0E-30 472 572
OphauB2|7617 PF00270 DEAD DEAD/DEAH box helicase 1.4E-42 75 239
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-26 276 382
OphauB2|7650 PF11661 DUF2986 Protein of unknown function (DUF2986) 2.4E-04 6 37
PF00270 DEAD DEAD/DEAH box helicase 5.5E-48 333 530
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-26 571 677
OphauB2|7659 PF00270 DEAD DEAD/DEAH box helicase 5.4E-45 49 213
PF04851 ResIII Type III restriction enzyme, res subunit 2.2E-06 52 208
PF00271 Helicase_C Helicase conserved C-terminal domain 9.6E-31 250 358
OphauB2|7692 PF00270 DEAD DEAD/DEAH box helicase 2.0E-30 290 480
PF04851 ResIII Type III restriction enzyme, res subunit 2.1E-05 291 476
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-18 520 633
OphauB2|7738 PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-09 181 341
PF00176 SNF2-rel_dom SNF2-related domain 1.2E-81 191 465
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-18 488 600
PF09110 HAND HAND 2.7E-34 753 857
PF09111 SLIDE SLIDE 3.8E-43 915 1030
OphauB2|7936 PF04851 ResIII Type III restriction enzyme, res subunit 6.3E-05 131 312
PF00270 DEAD DEAD/DEAH box helicase 2.7E-30 132 350
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-19 421 535
OphauB2|7957 PF00176 SNF2-rel_dom SNF2-related domain 2.6E-52 431 763
PF04851 ResIII Type III restriction enzyme, res subunit 4.3E-07 432 596
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.9E-06 777 816
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-15 855 969
OphauB2|8001 PF00270 DEAD DEAD/DEAH box helicase 4.1E-33 127 291
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-23 339 445
OphauB2|8140 PF00270 DEAD DEAD/DEAH box helicase 1.4E-38 33 203
PF04851 ResIII Type III restriction enzyme, res subunit 8.2E-06 43 166
PF00271 Helicase_C Helicase conserved C-terminal domain 6.5E-30 244 398
OphauB2|970 PF13892 DBINO DNA-binding domain 3.2E-48 718 849
PF04851 ResIII Type III restriction enzyme, res subunit 4.4E-07 962 1130
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-64 980 1265
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-20 1545 1657
OphauB2|983 PF00270 DEAD DEAD/DEAH box helicase 4.8E-39 232 431
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-26 488 601

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