Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain59
Total domain count89
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
OphauB2|1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-14 35 104
OphauB2|101 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.1E-06 588 655
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-07 665 730
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-05 750 836
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-16 757 822
PF16842 RRM_occluded Occluded RNA-recognition motif 4.3E-24 859 935
OphauB2|1018 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-14 162 228
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-20 262 331
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 8.8E-24 388 462
OphauB2|1198 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-10 244 304
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-08 332 395
OphauB2|1265 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 6.1E-44 29 155
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-15 218 283
OphauB2|1386 PF04818 CID CID domain 5.3E-10 26 146
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-06 467 516
OphauB2|1437 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-09 31 96
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-14 124 194
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-16 259 322
OphauB2|1677 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-14 15 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-11 103 170
OphauB2|2156 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-21 4 74
OphauB2|2167 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.7E-07 301 355
OphauB2|2179 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-17 313 382
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-16 418 482
OphauB2|2283 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.7E-09 14 114
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-10 29 101
OphauB2|2719 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-04 118 198
OphauB2|2922 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-05 181 251
PF01424 R3H R3H domain 2.4E-09 325 379
OphauB2|2937 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.9E-21 10 80
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 6.1E-32 124 203
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 2.0E-10 261 294
OphauB2|2963 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-07 308 359
OphauB2|3022 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-16 213 282
OphauB2|3286 PF16367 RRM_7 RNA recognition motif 3.0E-07 10 86
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-17 11 84
OphauB2|3379 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-03 45 139
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-18 63 132
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-17 151 219
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-21 244 312
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-08 347 381
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-08 419 456
PF00658 PABP Poly-adenylate binding protein, unique domain 1.3E-27 665 730
OphauB2|358 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.2E-14 40 109
OphauB2|3932 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-05 243 309
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-12 362 433
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.7E-06 493 553
OphauB2|3979 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-08 239 303
OphauB2|4147 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 1.9E-22 3 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-16 106 182
OphauB2|4149 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 7.4E-24 44 159
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-04 435 494
OphauB2|4206 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-15 51 119
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-11 233 314
OphauB2|4332 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-18 16 82
OphauB2|4405 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-08 6 68
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-16 308 376
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-09 490 550
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-11 614 688
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-14 719 787
OphauB2|4538 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-07 351 431
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-10 356 419
OphauB2|4734 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-18 70 139
OphauB2|4965 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-14 94 162
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-14 191 261
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-18 356 424
OphauB2|5075 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-07 143 209
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-11 328 400
OphauB2|5380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.1E-14 2 50
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.7E-16 85 142
OphauB2|5534 PF00929 RNase_T Exonuclease 2.6E-05 19 127
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-08 255 322
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 5.7E-11 350 377
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.3E-07 428 457
OphauB2|5602 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-12 103 168
OphauB2|5769 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-12 79 145
OphauB2|5934 PF01480 PWI PWI domain 2.6E-07 12 76
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-05 318 379
OphauB2|5967 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-10 18 83
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-10 151 219
OphauB2|6012 PF16131 Torus Torus domain 2.4E-42 51 156
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.2E-07 191 239
OphauB2|6130 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-15 70 140
OphauB2|6278 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-13 153 222
OphauB2|6333 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-11 8 72
OphauB2|6471 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-15 84 153
OphauB2|6570 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-16 51 121
OphauB2|6937 PF10378 RRM Putative RRM domain 8.3E-08 75 115
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-10 288 342
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-10 513 570
OphauB2|7007 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-06 8 68
OphauB2|7146 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-15 40 110
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-14 144 212
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-15 345 403
OphauB2|7216 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-10 208 265
OphauB2|7235 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-13 90 160
OphauB2|7310 PF05383 La La domain 7.7E-19 123 180
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-08 228 286
OphauB2|7429 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-05 63 124
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-13 336 399
OphauB2|7455 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-06 225 291
OphauB2|7469 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-05 96 156
OphauB2|7473 PF03467 Smg4_UPF3 Smg-4/UPF3 family 2.3E-45 90 259
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-05 516 567
OphauB2|7646 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-17 92 157
OphauB2|7741 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-07 73 113
OphauB2|7945 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-12 395 453
PF00806 PUF Pumilio-family RNA binding repeat 7.3E-07 603 635
PF00806 PUF Pumilio-family RNA binding repeat 2.5E-02 638 670
PF00806 PUF Pumilio-family RNA binding repeat 2.4E-02 681 698
OphauB2|8002 PF01585 G-patch G-patch domain 1.2E-12 317 357
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-04 423 467
OphauB2|808 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-06 76 166
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-17 85 154
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-19 175 245
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-12 302 365
OphauB2|867 PF14570 zf-RING_4 RING/Ubox like zinc-binding domain 1.2E-19 15 62
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-08 123 198

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