Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain47
Total domain count55
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
OphauB2|1184 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.0E-30 191 465
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-20 616 753
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.1E-06 616 740
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.3E-65 897 1102
PF13541 ChlI Subunit ChlI of Mg-chelatase 2.8E-06 954 1072
OphauB2|1531 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-06 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-13 325 367
OphauB2|1584 PF03215 Rad17 Rad17 P-loop domain 1.1E-08 41 177
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 6.8E-11 59 207
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.3E-05 77 178
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-16 78 205
PF08542 Rep_fac_C Replication factor C C-terminal domain 7.0E-14 290 375
OphauB2|1650 PF05970 PIF1 PIF1-like helicase 8.8E-47 309 517
PF13604 AAA_30 AAA domain 3.4E-21 309 517
PF13245 AAA_19 AAA domain 4.9E-11 323 459
PF13401 AAA_22 AAA domain 5.3E-07 325 450
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-04 327 418
PF05970 PIF1 PIF1-like helicase 3.1E-11 534 615
OphauB2|1658 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 4.5E-18 41 122
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 6.1E-07 142 204
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-06 256 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-47 257 386
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.3E-07 257 354
PF17862 AAA_lid_3 AAA+ lid domain 2.6E-13 409 448
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-47 531 664
PF17862 AAA_lid_3 AAA+ lid domain 1.8E-09 686 725
OphauB2|1850 PF03215 Rad17 Rad17 P-loop domain 4.2E-10 28 94
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 4.4E-10 49 199
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-16 68 195
PF08542 Rep_fac_C Replication factor C C-terminal domain 5.1E-22 282 367
OphauB2|2214 PF00628 PHD PHD-finger 3.3E-10 256 303
PF13831 PHD_2 PHD-finger 8.4E-10 269 302
PF13191 AAA_16 AAA ATPase domain 1.6E-11 356 513
PF13401 AAA_22 AAA domain 3.7E-07 376 519
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.7E-09 380 536
PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus 6.2E-51 553 752
OphauB2|2382 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-17 347 464
OphauB2|2507 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.0E-38 748 874
PF17862 AAA_lid_3 AAA+ lid domain 1.3E-08 898 933
OphauB2|2510 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.4E-33 195 427
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.4E-06 197 273
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-12 198 302
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.8E-07 434 504
OphauB2|2649 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 5.9E-27 129 221
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-07 539 669
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 844 970
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-09 1004 1035
OphauB2|2701 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.1E-25 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-22 479 617
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.8E-08 479 614
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.4E-68 705 908
PF13541 ChlI Subunit ChlI of Mg-chelatase 2.3E-06 755 880
OphauB2|308 PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.3E-06 291 360
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-41 292 421
PF17862 AAA_lid_3 AAA+ lid domain 6.0E-08 444 487
PF01434 Peptidase_M41 Peptidase family M41 8.9E-52 503 680
OphauB2|3226 PF08740 BCS1_N BCS1 N terminal 3.2E-45 94 310
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.7E-09 348 419
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-05 499 543
OphauB2|3235 PF06068 TIP49 TIP49 P-loop domain 3.9E-167 15 369
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.2E-07 38 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-06 67 117
PF17856 TIP49_C TIP49 AAA-lid domain 5.6E-24 375 440
OphauB2|3268 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 5.7E-11 20 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-06 38 179
OphauB2|3270 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 5.4E-14 311 386
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-08 506 600
PF08519 RFC1 Replication factor RFC1 C terminal domain 1.6E-56 784 936
OphauB2|3291 PF06068 TIP49 TIP49 P-loop domain 5.0E-154 20 361
PF03796 DnaB_C DnaB-like helicase C terminal domain 2.1E-06 65 180
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.6E-05 72 123
PF17856 TIP49_C TIP49 AAA-lid domain 5.9E-19 368 433
OphauB2|3582 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-40 340 474
PF17862 AAA_lid_3 AAA+ lid domain 6.5E-13 503 541
PF01434 Peptidase_M41 Peptidase family M41 1.1E-65 557 737
OphauB2|3635 PF13173 AAA_14 AAA domain 6.9E-07 68 172
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.8E-11 69 186
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.6E-04 70 149
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.7E-06 109 189
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.8E-19 255 341
OphauB2|3679 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-09 543 708
OphauB2|3732 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-04 8 38
PF13238 AAA_18 AAA domain 7.5E-26 8 127
PF13207 AAA_17 AAA domain 1.1E-06 11 83
OphauB2|4100 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 608 743
PF17862 AAA_lid_3 AAA+ lid domain 2.0E-07 769 801
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.7E-05 910 1010
OphauB2|4189 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.8E-37 152 285
PF17862 AAA_lid_3 AAA+ lid domain 4.4E-09 309 344
OphauB2|4314 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-40 219 350
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-07 374 415
OphauB2|4376 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.1E-11 124 255
PF17871 AAA_lid_9 AAA lid domain 7.2E-36 262 360
OphauB2|4377 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-42 35 207
PF00158 Sigma54_activat Sigma-54 interaction domain 2.1E-04 37 148
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.1E-08 40 158
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-06 42 158
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 8.2E-25 214 294
OphauB2|514 PF13191 AAA_16 AAA ATPase domain 4.1E-11 154 232
PF13401 AAA_22 AAA domain 9.9E-10 178 301
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-08 181 311
PF17872 AAA_lid_10 AAA lid domain 2.6E-07 342 397
OphauB2|5211 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-37 559 704
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-06 708 751
OphauB2|5479 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.6E-11 59 114
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.2E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-42 172 305
PF17862 AAA_lid_3 AAA+ lid domain 1.4E-09 327 370
OphauB2|5520 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-15 827 942
OphauB2|5579 PF01426 BAH BAH domain 6.1E-10 79 200
PF13191 AAA_16 AAA ATPase domain 2.5E-08 322 465
PF13401 AAA_22 AAA domain 3.0E-07 344 455
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-15 348 490
PF17872 AAA_lid_10 AAA lid domain 6.1E-11 520 556
OphauB2|5859 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-06 1 39
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-06 62 103
OphauB2|5860 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-14 253 377
OphauB2|6156 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.1E-37 327 468
PF17862 AAA_lid_3 AAA+ lid domain 4.7E-07 495 521
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-09 608 737
OphauB2|6205 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-13 128 182
PF05673 DUF815 Protein of unknown function (DUF815) 1.3E-05 236 306
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.3E-41 241 373
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-10 396 440
OphauB2|6272 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.4E-09 172 291
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-12 204 311
PF16193 AAA_assoc_2 AAA C-terminal domain 5.5E-21 342 413
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.2E-59 414 572
OphauB2|6581 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 3.9E-04 106 154
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.5E-14 217 334
PF17871 AAA_lid_9 AAA lid domain 3.0E-31 358 458
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-05 623 734
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.8E-44 626 787
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.9E-09 627 746
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.6E-09 628 749
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 8.2E-25 794 876
OphauB2|6751 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-13 199 327
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.3E-43 483 611
OphauB2|7154 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.7E-20 511 630
OphauB2|7171 PF01057 Parvo_NS1 Parvovirus non-structural protein NS1 2.2E-04 227 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-43 238 371
OphauB2|7296 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.6E-11 40 165
OphauB2|7603 PF04212 MIT MIT (microtubule interacting and transport) domain 2.7E-15 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 6.6E-07 157 254
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-41 164 292
PF17862 AAA_lid_3 AAA+ lid domain 8.8E-07 318 351
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.6E-24 366 426
OphauB2|7609 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.4E-10 89 144
PF05673 DUF815 Protein of unknown function (DUF815) 4.6E-06 162 267
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.0E-08 201 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-44 202 334
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 202 295
OphauB2|8066 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-39 204 336
PF17862 AAA_lid_3 AAA+ lid domain 4.1E-07 359 399
OphauB2|8086 PF08740 BCS1_N BCS1 N terminal 3.4E-38 45 219
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.1E-17 255 379
OphauB2|920 PF08740 BCS1_N BCS1 N terminal 1.1E-55 63 262
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.0E-08 300 364
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.1E-06 400 448

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