© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9947 |
| Gene name | |
| Location | Contig_763:10920..12625 |
| Strand | - |
| Gene length (bp) | 1705 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00995 | Sec1 | Sec1 family | 1.8E-112 | 3 | 521 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q63615|VP33A_RAT | Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1 | 1 | 521 | 7.0E-95 |
| sp|Q96AX1|VP33A_HUMAN | Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1 | 1 | 521 | 1.0E-94 |
| sp|Q9D2N9|VP33A_MOUSE | Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=1 SV=2 | 1 | 521 | 2.0E-93 |
| sp|Q94KJ7|VPS33_ARATH | Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1 | 4 | 520 | 5.0E-87 |
| sp|Q9P7V6|VPS33_SCHPO | Vacuolar protein sorting-associated protein 33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps33 PE=3 SV=1 | 1 | 522 | 1.0E-75 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q63615|VP33A_RAT | Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1 | 1 | 521 | 7.0E-95 |
| sp|Q96AX1|VP33A_HUMAN | Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1 | 1 | 521 | 1.0E-94 |
| sp|Q9D2N9|VP33A_MOUSE | Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=1 SV=2 | 1 | 521 | 2.0E-93 |
| sp|Q94KJ7|VPS33_ARATH | Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1 | 4 | 520 | 5.0E-87 |
| sp|Q9P7V6|VPS33_SCHPO | Vacuolar protein sorting-associated protein 33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps33 PE=3 SV=1 | 1 | 522 | 1.0E-75 |
| sp|Q58EN8|VP33B_DANRE | Vacuolar protein sorting-associated protein 33B OS=Danio rerio GN=vps33b PE=2 SV=1 | 4 | 517 | 2.0E-67 |
| sp|P59016|VP33B_MOUSE | Vacuolar protein sorting-associated protein 33B OS=Mus musculus GN=Vps33b PE=1 SV=1 | 3 | 517 | 1.0E-64 |
| sp|Q63616|VP33B_RAT | Vacuolar protein sorting-associated protein 33B OS=Rattus norvegicus GN=Vps33b PE=2 SV=1 | 3 | 520 | 2.0E-64 |
| sp|Q2HJ18|VP33B_BOVIN | Vacuolar protein sorting-associated protein 33B OS=Bos taurus GN=VPS33B PE=2 SV=1 | 3 | 520 | 2.0E-64 |
| sp|Q9Y1I2|VP33A_DROME | Vacuolar protein sorting-associated protein 33A OS=Drosophila melanogaster GN=car PE=1 SV=1 | 7 | 519 | 4.0E-64 |
| sp|Q9H267|VP33B_HUMAN | Vacuolar protein sorting-associated protein 33B OS=Homo sapiens GN=VPS33B PE=1 SV=2 | 3 | 517 | 1.0E-62 |
| sp|P20795|VPS33_YEAST | Vacuolar protein sorting-associated protein 33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS33 PE=1 SV=1 | 65 | 521 | 2.0E-31 |
| sp|P34260|VP33A_CAEEL | Vacuolar protein sorting-associated protein 33A OS=Caenorhabditis elegans GN=vps-33.1 PE=1 SV=4 | 17 | 520 | 2.0E-26 |
| sp|Q15833|STXB2_HUMAN | Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 | 17 | 521 | 5.0E-19 |
| sp|Q64324|STXB2_MOUSE | Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=1 SV=1 | 17 | 521 | 2.0E-18 |
| sp|Q28288|STXB2_CANLF | Syntaxin-binding protein 2 OS=Canis lupus familiaris GN=STXBP2 PE=2 SV=1 | 17 | 521 | 7.0E-18 |
| sp|Q62753|STXB2_RAT | Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 | 17 | 389 | 1.0E-16 |
| sp|Q6R748|STXB1_CHICK | Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1 | 17 | 441 | 2.0E-16 |
| sp|P61763|STXB1_BOVIN | Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1 | 17 | 441 | 2.0E-15 |
| sp|P61764|STXB1_HUMAN | Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1 | 17 | 441 | 2.0E-15 |
| sp|Q5R6D2|STXB1_PONAB | Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1 | 17 | 441 | 2.0E-15 |
| sp|P61765|STXB1_RAT | Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1 | 17 | 441 | 2.0E-15 |
| sp|O08599|STXB1_MOUSE | Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2 | 17 | 441 | 2.0E-15 |
| sp|Q07327|ROP_DROME | Protein ROP OS=Drosophila melanogaster GN=Rop PE=2 SV=2 | 17 | 327 | 1.0E-14 |
| sp|Q09805|VPS45_SCHPO | Vacuolar protein sorting-associated protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps45 PE=3 SV=1 | 117 | 327 | 3.0E-13 |
| sp|P34815|UNC18_CAEEL | Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans GN=unc-18 PE=2 SV=3 | 17 | 277 | 5.0E-13 |
| sp|Q54GE3|VPS45_DICDI | Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1 | 117 | 307 | 8.0E-13 |
| sp|O49048|VPS45_ARATH | Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2 | 77 | 307 | 6.0E-11 |
| sp|Q60770|STXB3_MOUSE | Syntaxin-binding protein 3 OS=Mus musculus GN=Stxbp3 PE=1 SV=1 | 20 | 281 | 9.0E-11 |
| sp|O00186|STXB3_HUMAN | Syntaxin-binding protein 3 OS=Homo sapiens GN=STXBP3 PE=1 SV=2 | 20 | 281 | 3.0E-10 |
| sp|Q9C5X3|KEULE_ARATH | SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 | 110 | 517 | 1.0E-09 |
| sp|Q9SZ77|SEC1B_ARATH | Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 | 110 | 518 | 2.0E-09 |
| sp|O08700|VPS45_RAT | Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=1 SV=1 | 117 | 306 | 2.0E-09 |
| sp|P97390|VPS45_MOUSE | Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1 | 117 | 306 | 3.0E-09 |
| sp|Q54QC8|SEC1_DICDI | Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 | 17 | 368 | 6.0E-09 |
| sp|Q9C5P7|SEC1A_ARATH | Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 | 110 | 308 | 1.0E-08 |
| sp|O94590|SEC1_SCHPO | Protein transport protein sec1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec1 PE=3 SV=1 | 103 | 277 | 5.0E-07 |
| sp|Q7XWP3|SEC1A_ORYSJ | Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 | 17 | 309 | 8.0E-07 |
| sp|Q9NRW7|VPS45_HUMAN | Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1 | 117 | 289 | 1.0E-06 |
| sp|P38932|VPS45_YEAST | Vacuolar protein sorting-associated protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS45 PE=1 SV=2 | 117 | 306 | 1.0E-06 |
| sp|Q5VNU3|SEC1B_ORYSJ | Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 | 110 | 308 | 3.0E-06 |
| sp|Q62991|SCFD1_RAT | Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1 | 117 | 318 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 479 | 501 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9947 LVTDQLLEEAGVLGDVSISELPLFFFPLEKDVLSLELDDSFRDLYLSKDVTPNYLMARALMEVQQNHGLFPRIVG KGDNAKRVADLLCRLRQELLAGDDATDSGKAGLTPSTTNESVVIIDREVDFVTPLLTQLTYEGLIDELFEIQNNQ AKVDTTVVGAPTQSSAATSQSRKRTIQLDSSDKLYEQLRDANFAIVGGLLNKIARRLQQVHSDYESKQKTKSLAE LKEFVGRLPGYQQEHQSARIHTGLAEEIIKHTRTDQFKGLLEVQQNLAAGADPSSQYDCIEELIARDTPLRETLR LLCIYSCISGGVKPKEYDSFRRLILQGYGYQHILTLANLEKLQLFLSRSSPLAGMIPMTGGAASGSGNKTNYTYL RKQLRLIVDEVQEDDPNDVSYVYSGYAPLSIRLVQCVLQKQYLLSVTKGSGGGSTAATGVGMQGWHGFDEAVKHV RGQTFYELQKGEDKAVKARALLSGGGQKQTVFVVFVGGITFTEIAALRFLAKQEESRRNIVICTTSIISGTGASS * |
| Coding | >Hirsu2|9947 CTGGTTACCGACCAGCTGCTCGAGGAGGCCGGCGTCCTGGGCGATGTCAGCATTTCCGAGCTGCCCTTGTTCTTC TTTCCGCTCGAGAAAGATGTCTTGTCTCTGGAGCTTGACGATTCCTTTCGGGACCTCTACCTGTCCAAGGACGTC ACCCCCAACTACCTGATGGCTAGGGCTCTGATGGAAGTGCAGCAGAACCACGGCCTGTTCCCCCGGATAGTCGGA AAAGGAGACAATGCGAAACGGGTCGCCGACCTGTTGTGTCGCCTGCGACAGGAGCTGCTCGCCGGCGACGACGCC ACCGACTCCGGCAAGGCCGGCCTCACGCCAAGCACGACCAACGAGAGTGTCGTCATCATCGACCGCGAGGTCGAC TTCGTCACTCCCCTCCTCACGCAGCTGACGTACGAAGGCCTTATCGACGAGCTGTTTGAGATACAGAACAACCAA GCCAAAGTCGATACGACCGTCGTCGGGGCGCCCACGCAATCCTCGGCCGCGACATCCCAGAGCAGAAAGCGGACG ATACAGCTGGATTCGAGCGACAAGCTGTACGAGCAGCTGCGAGATGCCAACTTCGCCATCGTCGGGGGCCTGCTC AACAAGATTGCCCGCCGGCTGCAGCAGGTGCACAGCGACTACGAGAGCAAACAGAAGACGAAGTCGCTGGCCGAG CTCAAGGAGTTTGTGGGACGGCTGCCCGGCTACCAGCAAGAGCACCAGAGCGCGAGGATACACACGGGGCTGGCC GAGGAGATCATCAAACACACGCGCACCGATCAATTCAAAGGCCTCCTCGAGGTGCAGCAGAATCTAGCCGCCGGC GCGGACCCATCGTCTCAATACGACTGCATCGAGGAGCTCATCGCCCGCGACACGCCGCTGCGGGAAACCCTGCGG CTGCTGTGCATCTACTCTTGCATATCCGGGGGCGTCAAGCCCAAGGAGTACGATAGTTTTCGGCGCCTGATCCTC CAAGGCTACGGTTACCAACACATCTTGACGCTGGCCAACCTCGAGAAGCTGCAGCTCTTCCTGTCCCGCTCGTCG CCGCTAGCCGGTATGATTCCCATGACGGGCGGCGCCGCCAGCGGGAGCGGCAACAAGACCAACTACACGTATCTG CGGAAGCAGCTCCGTCTGATCGTGGACGAGGTCCAAGAGGACGACCCCAACGACGTGTCGTACGTGTACAGCGGA TACGCGCCGCTCTCGATCCGACTCGTCCAATGCGTGCTGCAGAAGCAATATCTTCTCTCCGTCACCAAGGGCAGC GGCGGAGGCAGCACGGCCGCGACCGGGGTGGGGATGCAGGGCTGGCATGGCTTCGACGAGGCCGTCAAACATGTG CGCGGGCAGACGTTCTACGAGCTCCAGAAGGGCGAAGACAAGGCCGTCAAGGCACGCGCCCTGCTGTCTGGGGGT GGCCAGAAACAAACAGTCTTCGTCGTCTTCGTGGGCGGCATCACCTTCACCGAGATTGCCGCGCTTCGCTTCCTG GCCAAGCAAGAGGAGAGCCGCCGGAATATCGTCATTTGCACCACCTCCATCATTAGCGGGACCGGCGCCTCAAGC TGA |
| Transcript | >Hirsu2|9947 CTGGTTACCGACCAGCTGCTCGAGGAGGCCGGCGTCCTGGGCGATGTCAGCATTTCCGAGCTGCCCTTGTTCTTC TTTCCGCTCGAGAAAGATGTCTTGTCTCTGGAGCTTGACGATTCCTTTCGGGACCTCTACCTGTCCAAGGACGTC ACCCCCAACTACCTGATGGCTAGGGCTCTGATGGAAGTGCAGCAGAACCACGGCCTGTTCCCCCGGATAGTCGGA AAAGGAGACAATGCGAAACGGGTCGCCGACCTGTTGTGTCGCCTGCGACAGGAGCTGCTCGCCGGCGACGACGCC ACCGACTCCGGCAAGGCCGGCCTCACGCCAAGCACGACCAACGAGAGTGTCGTCATCATCGACCGCGAGGTCGAC TTCGTCACTCCCCTCCTCACGCAGCTGACGTACGAAGGCCTTATCGACGAGCTGTTTGAGATACAGAACAACCAA GCCAAAGTCGATACGACCGTCGTCGGGGCGCCCACGCAATCCTCGGCCGCGACATCCCAGAGCAGAAAGCGGACG ATACAGCTGGATTCGAGCGACAAGCTGTACGAGCAGCTGCGAGATGCCAACTTCGCCATCGTCGGGGGCCTGCTC AACAAGATTGCCCGCCGGCTGCAGCAGGTGCACAGCGACTACGAGAGCAAACAGAAGACGAAGTCGCTGGCCGAG CTCAAGGAGTTTGTGGGACGGCTGCCCGGCTACCAGCAAGAGCACCAGAGCGCGAGGATACACACGGGGCTGGCC GAGGAGATCATCAAACACACGCGCACCGATCAATTCAAAGGCCTCCTCGAGGTGCAGCAGAATCTAGCCGCCGGC GCGGACCCATCGTCTCAATACGACTGCATCGAGGAGCTCATCGCCCGCGACACGCCGCTGCGGGAAACCCTGCGG CTGCTGTGCATCTACTCTTGCATATCCGGGGGCGTCAAGCCCAAGGAGTACGATAGTTTTCGGCGCCTGATCCTC CAAGGCTACGGTTACCAACACATCTTGACGCTGGCCAACCTCGAGAAGCTGCAGCTCTTCCTGTCCCGCTCGTCG CCGCTAGCCGGTATGATTCCCATGACGGGCGGCGCCGCCAGCGGGAGCGGCAACAAGACCAACTACACGTATCTG CGGAAGCAGCTCCGTCTGATCGTGGACGAGGTCCAAGAGGACGACCCCAACGACGTGTCGTACGTGTACAGCGGA TACGCGCCGCTCTCGATCCGACTCGTCCAATGCGTGCTGCAGAAGCAATATCTTCTCTCCGTCACCAAGGGCAGC GGCGGAGGCAGCACGGCCGCGACCGGGGTGGGGATGCAGGGCTGGCATGGCTTCGACGAGGCCGTCAAACATGTG CGCGGGCAGACGTTCTACGAGCTCCAGAAGGGCGAAGACAAGGCCGTCAAGGCACGCGCCCTGCTGTCTGGGGGT GGCCAGAAACAAACAGTCTTCGTCGTCTTCGTGGGCGGCATCACCTTCACCGAGATTGCCGCGCTTCGCTTCCTG GCCAAGCAAGAGGAGAGCCGCCGGAATATCGTCATTTGCACCACCTCCATCATTAGCGGGACCGGCGCCTCAAGC TGA |
| Gene | >Hirsu2|9947 CTGGTTACCGACCAGCTGCTCGAGGAGGCCGGCGTCCTGGGCGATGTCAGCATTTCCGAGCTGCCCTTGTTCTTC TTTCCGCTCGAGAAAGATGTCTTGTCTCTGGAGCTTGACGATTCCTTTCGGGACCTCTACCTGTCCAAGGACGTC ACCCCCAACTACCTGATGGCTAGGGCTCTGATGGAAGTGCAGCAGAACCACGGCCTGTTCCCCCGGATAGTCGGA AAAGGAGACAATGCGAAACGGGTCGCCGACCTGTTGTGTCGCCTGCGACAGGAGCTGCTCGCCGGCGACGACGCC ACCGACTCCGGCAAGGCCGGCCTCACGCCAAGCACGACCAACGAGAGTGTCGTCATCATCGACCGCGAGGTCGAC TTCGTCACTCCCCTCCTCACGCAGCTGACGTACGAAGGCCTTATCGACGAGCTGTTTGAGATACAGAACAACCAA GCCAAAGTCGATACGACCGTCGTCGGGGCGCCCACGCAATCCTCGGCCGCGACATCCCAGAGCAGAAAGCGGACG ATACAGCTGGATTCGAGCGACAAGCTGTACGAGCAGCTGCGAGATGCCAACTTCGCCATCGTCGGGGGCCTGCTC AACAAGATTGCCCGCCGGCTGCAGCAGGTGCACAGCGACTACGAGAGCAAACAGAAGACGAAGTCGCTGGCCGAG CTCAAGGAGTTTGTGGGACGGCTGCCCGGCTACCAGCAAGAGCACCAGAGCGCGAGGATACACACGGGGCTGGCC GAGGAGATCATCAAACACACGCGCACCGATCAATTCAAAGGCCTCCTCGAGGTGCAGCAGAATCTAGCCGCCGGC GCGGACCCATCGTCTCAATACGACTGCATCGAGGAGCTCATCGCCCGCGACACGCCGCTGCGGGAAACCCTGCGG CTGCTGTGCATCTACTCTTGCATATCCGGGGGCGTCAAGCCCAAGGAGTACGATAGTTTTCGGCGCCTGATCCTC CAAGGCTACGGTTACCAACACATCTTGACGCTGGCCAACCTCGAGAAGCTGCAGCTCTTCCTGTCCCGCTCGTCG CCGCTAGCCGGTATGATTCCCATGACGGGCGGCGCCGCCAGCGGGAGCGGCAACAAGACCAACTACACGTATCTG CGGAAGCAGCTCCGTCTGATCGTGGACGAGGTCCAAGAGGACGACCCCAACGACGTGTCGTACGTGTACAGCGGA TACGCGCCGCTCTCGATCCGACTCGTCCAATGCGTGCTGCAGAAGCAATATCTTCTCTCCGTCACCAAGGGCAGC GGCGGAGGCAGCACGGCCGCGACCGGGGTGGGGATGCAGGGCTGGCATGGCTTCGACGAGGCCGTCAAACATGTG CGCGGGCAGACGTTCTACGAGCTCCAGAAGGGCGAAGACAAGGCCGTCAAGGCACGCGCCCTGCTGTCTGGGGGT GGCCAGAAACAAACAGTCTTCGTCGTCTTCGTGGGCGGCATCACCTTCACCGAGATTGCCGCGCTTCGCTTCCTG GCCAAGCAAGAGGAGAGTAAGTCGGGCGCACCCCTCCCCAAACGGCCCCTCGCGGCCCCGGACCCCGTTCATTCT AACCGGATCGCCAGGCCGCCGGAATATCGTCATTTGCACCACCTCCATCATTAGCGGTAACAGGATGATGGATGC AGCTATCGAGAGGGACTCATTCGCGAGGCGGGCAGGGACCGGCGCCTCAAGCTGA |