© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9931 |
| Gene name | |
| Location | Contig_76:40318..40955 |
| Strand | + |
| Gene length (bp) | 637 |
| Transcript length (bp) | 495 |
| Coding sequence length (bp) | 495 |
| Protein length (aa) | 165 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 1.2E-08 | 21 | 82 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
| 2 | 65 | 87 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9931 MKQQQAGIIEAKVAIKRADVSVLQGRSIIVFTVFTIFFLPLSFFASIFGMNTAELNGGLMPLAKQLTYMFSLSGA LILFSLSVAFSAWVRAVIAVPSGLIKSYLTYWMGLHDVVTTNIKALRDFETKKKDQLKDRYLKEQMVKIEEMIQK AKADGEKSGNLHVV* |
| Coding | >Hirsu2|9931 ATGAAACAGCAACAGGCCGGAATCATCGAGGCCAAGGTGGCCATCAAGCGCGCCGACGTTTCAGTCCTACAAGGC CGTTCGATTATCGTCTTTACCGTTTTCACCATCTTCTTTCTCCCTTTATCCTTCTTCGCGTCTATCTTCGGCATG AACACGGCCGAGCTGAACGGAGGCTTGATGCCGCTGGCCAAGCAGCTGACCTACATGTTCTCCCTGTCCGGAGCC CTCATTCTATTTTCTCTGTCCGTTGCCTTCAGTGCCTGGGTTCGAGCCGTTATTGCCGTCCCCTCCGGACTCATC AAGTCATACTTGACGTATTGGATGGGGTTGCACGACGTCGTCACCACCAACATCAAGGCCTTGAGGGACTTTGAG ACGAAGAAGAAAGACCAACTGAAGGATCGATACTTGAAAGAACAGATGGTCAAGATCGAAGAGATGATACAAAAG GCCAAGGCCGACGGTGAAAAATCCGGCAATTTGCACGTGGTTTGA |
| Transcript | >Hirsu2|9931 ATGAAACAGCAACAGGCCGGAATCATCGAGGCCAAGGTGGCCATCAAGCGCGCCGACGTTTCAGTCCTACAAGGC CGTTCGATTATCGTCTTTACCGTTTTCACCATCTTCTTTCTCCCTTTATCCTTCTTCGCGTCTATCTTCGGCATG AACACGGCCGAGCTGAACGGAGGCTTGATGCCGCTGGCCAAGCAGCTGACCTACATGTTCTCCCTGTCCGGAGCC CTCATTCTATTTTCTCTGTCCGTTGCCTTCAGTGCCTGGGTTCGAGCCGTTATTGCCGTCCCCTCCGGACTCATC AAGTCATACTTGACGTATTGGATGGGGTTGCACGACGTCGTCACCACCAACATCAAGGCCTTGAGGGACTTTGAG ACGAAGAAGAAAGACCAACTGAAGGATCGATACTTGAAAGAACAGATGGTCAAGATCGAAGAGATGATACAAAAG GCCAAGGCCGACGGTGAAAAATCCGGCAATTTGCACGTGGTTTGA |
| Gene | >Hirsu2|9931 ATGAAACAGCAACAGGCCGGAATCATCGAGGCCAAGGTGGCCATCAAGCGCGCCGACGTTTCAGTCCTACAAGGC CGTTCGATTATCGTCTTTACCGTTTTCACCATCTTCTTTGTAAGCGCTCCCCGCATAGAGTCCGCCCGCAGCCGA GAAAAAGCCCGGGCTGGCGCTTACTGGAAGCCCTGCAGCTCCCTTTATCCTTCTTCGCGTCTATCTTCGGCATGA ACACGGCCGAGCTGAACGGAGGCTTGATGCCGCTGGCCAAGCAGCTGACCTACATGTGTAAGTCAATTCTCCGTA AAAGCCCTCTGACATTGACACGCTTCCCGAAAACTGATGCACGTGGAAAGTCTCCCTGTCCGGAGCCCTCATTCT ATTTTCTCTGTCCGTTGCCTTCAGTGCCTGGGTTCGAGCCGTTATTGCCGTCCCCTCCGGACTCATCAAGTCATA CTTGACGTATTGGATGGGGTTGCACGACGTCGTCACCACCAACATCAAGGCCTTGAGGGACTTTGAGACGAAGAA GAAAGACCAACTGAAGGATCGATACTTGAAAGAACAGATGGTCAAGATCGAAGAGATGATACAAAAGGCCAAGGC CGACGGTGAAAAATCCGGCAATTTGCACGTGGTTTGA |