Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9921
Gene name
LocationContig_759:8510..10010
Strand-
Gene length (bp)1500
Transcript length (bp)618
Coding sequence length (bp)618
Protein length (aa) 206

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-11 8 72

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10193|SRP1_SCHPO Pre-mRNA-splicing factor srp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp1 PE=1 SV=3 7 153 3.0E-32
sp|C6Y4C0|YFMR_SCHPO Putative splicing factor C222.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1 5 84 2.0E-16
sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1 7 153 5.0E-07
sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1 6 83 9.0E-07
sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp6 PE=3 SV=1 7 162 2.0E-06
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Swissprot ID Swissprot Description Start End E-value
sp|Q10193|SRP1_SCHPO Pre-mRNA-splicing factor srp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp1 PE=1 SV=3 7 153 3.0E-32
sp|C6Y4C0|YFMR_SCHPO Putative splicing factor C222.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1 5 84 2.0E-16
sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1 7 153 5.0E-07
sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1 6 83 9.0E-07
sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp6 PE=3 SV=1 7 162 2.0E-06
sp|O22703|RZ1B_ARATH Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 8 72 2.0E-06
sp|G3V6S8|SRSF6_RAT Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 8 85 2.0E-06
sp|Q3TWW8|SRSF6_MOUSE Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 8 85 2.0E-06
sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 8 85 3.0E-06
sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 8 85 5.0E-06
sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 5 71 8.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.295 0.9194 0.127 0.0522 0.0603 0.0289 0.0504 0.0122 0.0032 0.0007

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6330
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4882
Ophiocordyceps australis map64 (Brazil) OphauB2|6333
Ophiocordyceps camponoti-floridani Ophcf2|02488
Ophiocordyceps kimflemingae Ophio5|477
Ophiocordyceps subramaniannii Hirsu2|9921 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9921
MSRGGTTLYVTGFCHGTRARDLAYEFERYGRLVRCDIPAPRSSSSRLFAFVEYEDRRDADDAYYEMHNKRIGRDD
CLKIEWARTPPSASWRFESGRDRDRRGVRSPRRGRSPSPRRSTRDYSPRKDDRRDRDRDRDRDYDRDSRRDRDRS
RSPDNRDRDRDRDRDAKDEREDRDRRENGTNGDDRKGEAHDSPPAAAHDDLDVAE*
Coding >Hirsu2|9921
ATGTCTCGCGGCGGCACCACCCTCTACGTGACCGGCTTCTGCCACGGCACGCGCGCCCGCGATCTCGCCTACGAG
TTCGAACGCTATGGCCGTCTCGTCCGTTGCGACATTCCGGCGCCGCGCTCTTCGTCTAGCAGACTTTTTGCATTC
GTCGAGTACGAGGACCGACGCGATGCTGATGACGCCTACTACGAGATGCACAACAAGCGCATCGGCCGCGACGAC
TGCCTGAAGATCGAGTGGGCGCGCACTCCCCCGTCGGCCTCGTGGCGATTCGAGTCGGGTCGCGATAGGGATCGC
CGCGGCGTTCGCTCGCCTCGACGCGGTCGGTCTCCGTCCCCCCGACGCAGCACGCGGGACTACTCTCCTCGCAAG
GACGACCGCCGCGACCGTGACCGCGACCGCGACCGCGACTACGACCGAGACAGCCGCCGGGACCGCGATCGCTCT
CGCAGCCCGGATAATCGTGACCGCGACCGCGACCGCGACCGCGACGCCAAGGACGAGCGCGAGGACCGCGACCGC
CGCGAGAACGGCACCAACGGCGACGACCGAAAGGGCGAAGCCCATGACAGCCCTCCCGCGGCAGCACATGACGAT
CTCGACGTGGCCGAGTAG
Transcript >Hirsu2|9921
ATGTCTCGCGGCGGCACCACCCTCTACGTGACCGGCTTCTGCCACGGCACGCGCGCCCGCGATCTCGCCTACGAG
TTCGAACGCTATGGCCGTCTCGTCCGTTGCGACATTCCGGCGCCGCGCTCTTCGTCTAGCAGACTTTTTGCATTC
GTCGAGTACGAGGACCGACGCGATGCTGATGACGCCTACTACGAGATGCACAACAAGCGCATCGGCCGCGACGAC
TGCCTGAAGATCGAGTGGGCGCGCACTCCCCCGTCGGCCTCGTGGCGATTCGAGTCGGGTCGCGATAGGGATCGC
CGCGGCGTTCGCTCGCCTCGACGCGGTCGGTCTCCGTCCCCCCGACGCAGCACGCGGGACTACTCTCCTCGCAAG
GACGACCGCCGCGACCGTGACCGCGACCGCGACCGCGACTACGACCGAGACAGCCGCCGGGACCGCGATCGCTCT
CGCAGCCCGGATAATCGTGACCGCGACCGCGACCGCGACCGCGACGCCAAGGACGAGCGCGAGGACCGCGACCGC
CGCGAGAACGGCACCAACGGCGACGACCGAAAGGGCGAAGCCCATGACAGCCCTCCCGCGGCAGCACATGACGAT
CTCGACGTGGCCGAGTAG
Gene >Hirsu2|9921
ATGTCTCGCGGCGGCACCACCCTCTACGTGACCGGCTTCTGCCACGGCACGCGCGCCCGCGATCTCGCCTACGAG
TTCGAACGGTATGTCAACCGCGCCTCCGCTCGCGCCTTTCGTATCCGCCCTCGTCTACGCCTTTCCTCGCCCTCT
CGCACCCGACGATGAGACTTGCTCTCCCGCACGCGGCATCTCGATCCTCACGAGACTTGATGTCTTCTGCCTCCG
CCCTCGCCGTCTCCGTCTCCGTCTCCGTCCGTCGTCGTCCACGCCCTCGTCCACGCCCTCGTCCACGCCCTCGTC
CTCGTCCACGCCCACGTCCACGCCCACGTCCTCGCCCACCGCTCCAAAACTACCACGCTCCTCCTCCTCCCGCCC
CTCTCCTCCCTCCTGTCCCAGCGATCGATGCGTCTGTGGGCTCGCTTCGCGGTCGCCGTTACGTTCGAGTCGACG
TTTCGATAGCTCCGCACGTTGCGGGCGTGCGAATTTTCAGGAACCAAAAACCAGTCATGCGACAGGAGGGAAACG
GCTTTTTTTTTTTCTCTTCCCTTGATCCCTCTCTCCCAACCACCACATCTCAGCTCCAATCTCGCGCACCTTCCC
TCCCTTTCTCCTGCCCATCTCCCTATCTGCTTTCCTTACATCGGACCCTACCCGCTTAACCTCGCTCACTGCCTC
GTCGGCCAAACTCACGCGCCTCATACTGACTCGCCTCTGCCAACAGCTATGGCCGTCTCGTCCGTTGCGACATTC
CGGCGCCGCGCTCTTCGTCTAGCAGACTGTAAGTTGTCGTCGGCCCGCACCCGTCGCCACCACGTCTAACATTTT
TTACTGTGGAAGTTTTGCATTCGTCGAGTACGAGGACCGACGCGATGCTGATGACGCCTACTACGAGATGCACAA
CAAGCGCATCGGCCGCGACGACTGCCTGAAGATCGAGGTCCGTACTTCAGACGCAGGCTGTCTCCGGCCAACCCT
TCGCTGACTGTTTCTCTGGAAGTGGGCGCGCACTCCCCCGTCGGCCTCGTGGCGATTCGAGTCGGGTCGCGATAG
GGATCGCCGCGGCGTTCGCTCGCCTCGACGCGGTCGGTCTCCGTCCCCCCGACGCAGCACGCGGGACTACTCTCC
TCGCAAGGACGACCGCCGCGACCGTGACCGCGACCGCGACCGCGACTACGACCGAGACAGCCGCCGGGACCGCGA
TCGCTCTCGCAGCCCGGATAATCGGTGAGTAGTGGCGCACTCGGTTCTGACGGACGGTGATTGACTGGGGCACAC
AGTGACCGCGACCGCGACCGCGACCGCGACGCCAAGGACGAGCGCGAGGACCGCGACCGCCGCGAGAACGGCACC
AACGGCGACGACCGAAAGGGTAGGAAGCTCTTCGTCATGCTTGACTGGGCATGATTTACATGCAAATAGGTCTAA
CTCGAGAGGAAAACAGGCGAAGCCCATGACAGCCCTCCCGCGGCAGCACATGACGATCTCGACGTGGCCGAGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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