© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9918 |
| Gene name | |
| Location | Contig_759:3245..4183 |
| Strand | - |
| Gene length (bp) | 938 |
| Transcript length (bp) | 555 |
| Coding sequence length (bp) | 555 |
| Protein length (aa) | 185 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17135 | Ribosomal_L18 | Ribosomal protein 60S L18 and 50S L18e | 3.5E-92 | 2 | 184 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8TFH1|RL18B_SCHPO | 60S ribosomal protein L18-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1802 PE=1 SV=1 | 1 | 184 | 9.0E-94 |
| sp|Q10192|RL18A_SCHPO | 60S ribosomal protein L18-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1801 PE=1 SV=1 | 1 | 184 | 1.0E-86 |
| sp|P0CX49|RL18A_YEAST | 60S ribosomal protein L18-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL18A PE=1 SV=1 | 1 | 184 | 5.0E-80 |
| sp|P0CX50|RL18B_YEAST | 60S ribosomal protein L18-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL18B PE=1 SV=1 | 1 | 184 | 5.0E-80 |
| sp|Q4GXG7|RL18_TIMBA | 60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1 | 1 | 183 | 4.0E-75 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8TFH1|RL18B_SCHPO | 60S ribosomal protein L18-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1802 PE=1 SV=1 | 1 | 184 | 9.0E-94 |
| sp|Q10192|RL18A_SCHPO | 60S ribosomal protein L18-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1801 PE=1 SV=1 | 1 | 184 | 1.0E-86 |
| sp|P0CX49|RL18A_YEAST | 60S ribosomal protein L18-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL18A PE=1 SV=1 | 1 | 184 | 5.0E-80 |
| sp|P0CX50|RL18B_YEAST | 60S ribosomal protein L18-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL18B PE=1 SV=1 | 1 | 184 | 5.0E-80 |
| sp|Q4GXG7|RL18_TIMBA | 60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1 | 1 | 183 | 4.0E-75 |
| sp|Q9VS34|RL18_DROME | 60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1 | 1 | 183 | 9.0E-73 |
| sp|P42791|RL182_ARATH | 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2 | 1 | 184 | 7.0E-72 |
| sp|Q940B0|RL183_ARATH | 60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1 | 1 | 184 | 2.0E-70 |
| sp|O65729|RL18_CICAR | 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1 | 11 | 184 | 3.0E-69 |
| sp|Q0PXY6|RL18_DIACI | 60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1 | 1 | 183 | 9.0E-69 |
| sp|Q56FG8|RL18_LYSTE | 60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1 | 1 | 183 | 9.0E-67 |
| sp|Q1HR62|RL18_AEDAE | 60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1 | 1 | 183 | 2.0E-66 |
| sp|O22254|RL181_ARATH | Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3 | 1 | 184 | 3.0E-66 |
| sp|Q90YV0|RL18_ICTPU | 60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3 | 1 | 171 | 4.0E-66 |
| sp|Q7QJM5|RL18_ANOGA | 60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3 | 1 | 183 | 3.0E-65 |
| sp|P12001|RL18_RAT | 60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=1 SV=2 | 1 | 171 | 5.0E-65 |
| sp|Q4R5H8|RL18_MACFA | 60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1 | 1 | 171 | 2.0E-64 |
| sp|Q07020|RL18_HUMAN | 60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2 | 1 | 171 | 2.0E-64 |
| sp|Q60P81|RL18_CAEBR | 60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1 | 1 | 171 | 4.0E-64 |
| sp|D0VWQ3|RL18_CANLF | Ribosomal protein L18 OS=Canis lupus familiaris GN=RPL18 PE=1 SV=2 | 1 | 171 | 5.0E-64 |
| sp|Q5E973|RL18_BOVIN | 60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3 | 1 | 171 | 7.0E-64 |
| sp|Q2M0G4|RL18_DROPS | 60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2 | 2 | 183 | 8.0E-64 |
| sp|O45946|RL18_CAEEL | 60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1 | 1 | 171 | 1.0E-63 |
| sp|Q962Y8|RL18_SPOFR | 60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1 | 1 | 179 | 2.0E-63 |
| sp|P02412|RL18B_XENLA | 60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-b PE=2 SV=4 | 1 | 171 | 4.0E-63 |
| sp|Q4PM04|RL18_IXOSC | 60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1 | 1 | 171 | 4.0E-63 |
| sp|P09897|RL18A_XENLA | 60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-a PE=2 SV=2 | 1 | 171 | 9.0E-63 |
| sp|P69091|RL18_ORENI | 60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2 | 1 | 183 | 1.0E-62 |
| sp|P69090|RL18_OREMO | 60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2 | 1 | 183 | 1.0E-62 |
| sp|Q6F442|RL18_PLUXY | 60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1 | 1 | 179 | 3.0E-62 |
| sp|Q5UAS1|RL18_BOMMO | 60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1 | 1 | 179 | 3.0E-62 |
| sp|P0DJ17|RL18_TETTH | 60S ribosomal protein L18 OS=Tetrahymena thermophila GN=RPL18 PE=1 SV=1 | 1 | 175 | 2.0E-60 |
| sp|Q4N438|RL18_THEPA | 60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1 | 1 | 184 | 3.0E-60 |
| sp|Q54VZ4|RL18_DICDI | 60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=1 SV=1 | 1 | 176 | 3.0E-57 |
| sp|P35980|RL18_MOUSE | 60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=1 SV=3 | 1 | 171 | 4.0E-57 |
| sp|A3F4S0|RL18_TAEAS | 60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1 | 1 | 169 | 2.0E-56 |
| sp|Q4UFD5|RL18_THEAN | 60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2 | 1 | 183 | 3.0E-56 |
| sp|P50885|RL18_TRYB2 | 60S ribosomal protein L18 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=RPL18-A PE=1 SV=1 | 1 | 177 | 3.0E-49 |
| sp|Q4DZP2|RL18_TRYCC | 60S ribosomal protein L18 OS=Trypanosoma cruzi (strain CL Brener) GN=RPL18 PE=3 SV=1 | 1 | 169 | 2.0E-46 |
| sp|Q4QG98|RL18_LEIMA | 60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1 | 1 | 183 | 6.0E-42 |
| sp|Q95342|RL18_PIG | 60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=2 SV=3 | 1 | 103 | 5.0E-33 |
| sp|P24558|RL18_SALSA | 60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1 | 1 | 165 | 8.0E-23 |
| sp|B6YSQ4|RL18E_THEON | 50S ribosomal protein L18e OS=Thermococcus onnurineus (strain NA1) GN=rpl18e PE=3 SV=1 | 28 | 138 | 3.0E-10 |
| sp|Q8U0E5|RL18E_PYRFU | 50S ribosomal protein L18e OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl18e PE=1 SV=1 | 28 | 138 | 5.0E-10 |
| sp|O59302|RL18E_PYRHO | 50S ribosomal protein L18e OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpl18e PE=3 SV=1 | 28 | 138 | 2.0E-09 |
| sp|Q5JJF5|RL18E_THEKO | 50S ribosomal protein L18e OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl18e PE=3 SV=1 | 22 | 138 | 2.0E-09 |
| sp|Q9V197|RL18E_PYRAB | 50S ribosomal protein L18e OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl18e PE=3 SV=1 | 28 | 138 | 5.0E-09 |
| sp|Q2FTA2|RL18E_METHJ | 50S ribosomal protein L18e OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rpl18e PE=3 SV=1 | 22 | 139 | 7.0E-07 |
| sp|O26145|RL18E_METTH | 50S ribosomal protein L18e OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpl18e PE=3 SV=1 | 28 | 138 | 1.0E-06 |
| sp|Q8TVB7|RL18E_METKA | 50S ribosomal protein L18e OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl18e PE=3 SV=1 | 22 | 138 | 1.0E-06 |
| sp|P54022|RL18E_METJA | 50S ribosomal protein L18e OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpl18e PE=3 SV=2 | 28 | 138 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9918 MGIDLDRHHVKATHRKAPKSDNVYLKLLVKLYRFLARRTDAAFNKVVLRRLFMSKTNRPPVSLSRIASNVNKEGE KRTVVVVGTVTDDNRLLAVPKLTIAALRFTSTARARILAAGGEAMTLDQLALRAPTGSNTLILRGPKNSREAFKH FGFGPHKHKKPQIESKGRKFERARGRRRSRGFKV* |
| Coding | >Hirsu2|9918 ATGGGTATCGATCTCGACCGCCACCACGTCAAGGCCACGCACCGCAAGGCCCCCAAGAGCGACAATGTCTACCTC AAGCTCTTGGTGAAGCTGTACCGCTTCCTGGCTCGCCGTACCGACGCCGCCTTCAACAAGGTCGTCCTCCGCCGG CTGTTCATGTCCAAGACGAACCGGCCGCCGGTGTCGCTGTCGCGCATCGCGTCCAACGTCAACAAGGAGGGCGAG AAGCGCACCGTCGTCGTCGTCGGCACCGTCACCGACGACAACCGCCTGCTGGCGGTGCCCAAGCTGACCATCGCC GCCCTGCGCTTCACCTCGACGGCCCGCGCCCGCATCCTCGCCGCCGGGGGCGAGGCCATGACGCTCGACCAGCTG GCCCTCCGCGCGCCCACCGGCAGCAACACGCTGATCCTCCGCGGGCCCAAGAACAGCCGCGAGGCCTTCAAGCAC TTCGGCTTCGGCCCTCACAAGCACAAGAAACCGCAAATCGAGTCCAAGGGCCGCAAGTTCGAGCGCGCCCGTGGT CGCAGACGCTCTCGCGGCTTCAAGGTCTAA |
| Transcript | >Hirsu2|9918 ATGGGTATCGATCTCGACCGCCACCACGTCAAGGCCACGCACCGCAAGGCCCCCAAGAGCGACAATGTCTACCTC AAGCTCTTGGTGAAGCTGTACCGCTTCCTGGCTCGCCGTACCGACGCCGCCTTCAACAAGGTCGTCCTCCGCCGG CTGTTCATGTCCAAGACGAACCGGCCGCCGGTGTCGCTGTCGCGCATCGCGTCCAACGTCAACAAGGAGGGCGAG AAGCGCACCGTCGTCGTCGTCGGCACCGTCACCGACGACAACCGCCTGCTGGCGGTGCCCAAGCTGACCATCGCC GCCCTGCGCTTCACCTCGACGGCCCGCGCCCGCATCCTCGCCGCCGGGGGCGAGGCCATGACGCTCGACCAGCTG GCCCTCCGCGCGCCCACCGGCAGCAACACGCTGATCCTCCGCGGGCCCAAGAACAGCCGCGAGGCCTTCAAGCAC TTCGGCTTCGGCCCTCACAAGCACAAGAAACCGCAAATCGAGTCCAAGGGCCGCAAGTTCGAGCGCGCCCGTGGT CGCAGACGCTCTCGCGGCTTCAAGGTCTAA |
| Gene | >Hirsu2|9918 ATGGGTACGTGATGCTGCCCCGTCCCAGCCTAAGTGTGCGAGTGAGGCCGGGCCGCCGGGCGAGTCGTCGCGAGA CGGCCTCTCGCCGGGCGCCCGTTCCTTGCGTCCCCCCCGCGGGCGCGGCCGCCGCGCCGCCCGCTTGTTGAGCAT GCCGGGACCGCCCCAAACGGCTGACGATGGGCTTTCCTCTCCTCCGTCCGCGCGAGCCAGGTATCGATCTCGACC GCCACCACGTCAAGGCCACGCACCGCAAGGCCCCCAAGAGCGACAATGTCTACCTCAAGCTCTTGGTGAAGCTGT ACCGCTTCCTGGCTCGTACGTGTCCCCCGTCCCGCGCCGCCCTCTTCCGAGCGGAAGGCGAAGTTGAGGGCTTGC TTGCTGACCACGGCGGGACCGTTCTCCTTGGGGACGGTCGGATTGGGGGGCAACGCACAGGCCGTACCGACGCCG CCTTCAACAAGGTCGTCCTCCGCCGGCTGTTCATGTCCAAGACGAACCGGCCGCCGGTGTCGCTGTCGCGCATCG CGTCCAACGTCAACAAGGAGGGCGAGAAGCGCACCGTCGTCGTCGTCGGCACCGTCACCGACGACAACCGCCTGC TGGCGGTGCCCAAGCTGACCATCGCCGCCCTGCGCTTCACCTCGACGGCCCGCGCCCGCATCCTCGCCGCCGGGG GCGAGGCCATGACGCTCGACCAGCTGGCCCTCCGCGCGCCCACCGGCAGCAACACGCTGATCCTCCGCGGGCCCA AGAACAGCCGCGAGGCCTTCAAGCACTTCGGCTTCGGCCCTCACAAGCACAAGGTACGTGGTTTCGCGAGCGGCG TCTGGCCAGGCTCGACTGACCTTGTCGGCCTGCAGAAACCGCAAATCGAGTCCAAGGGCCGCAAGTTCGAGCGCG CCCGTGGTCGCAGACGCTCTCGCGGCTTCAAGGTCTAA |