Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|991
Gene name
LocationContig_1204:3046..3995
Strand+
Gene length (bp)949
Transcript length (bp)753
Coding sequence length (bp)753
Protein length (aa) 251

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9USN4|YJA1_SCHPO Uncharacterized transporter C1529.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1529.01 PE=3 SV=2 89 223 6.0E-18

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

Domain # Start End Length
1 160 179 19
2 186 208 22
3 218 237 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|991
MVKDEHSWVQFGSTEATSNTQVGSINSEKEEHEKPASLADWEAGSDDAPAHGDSRRCVGSVRSGKTLSRSVSEVG
NGIQNQRDPCFVREEGLARADSPGSRDATQVQWDGPGDPANPKCWPIKGKWSAVFCASLRPVYLCPRIRPGALGL
GPPLGATRGVIIIQISNVVFLLFNLGCGLARTEGQMIAFRFLAGIGGSAPLAIGGGLPSDLFSDEGRGRVMSLYM
MFLYGMIYVHSLGDQVPRVAGHSGL*
Coding >Hirsu2|991
ATGGTCAAGGACGAGCACAGCTGGGTGCAATTCGGGTCCACCGAGGCTACGTCCAACACCCAAGTCGGCTCGATA
AACTCGGAGAAGGAGGAGCACGAGAAGCCGGCGAGCTTGGCCGACTGGGAGGCAGGCAGCGATGATGCGCCGGCT
CATGGGGACTCTAGGCGTTGTGTCGGATCGGTTCGCTCCGGCAAGACCCTGTCGAGGAGCGTCTCGGAAGTCGGG
AACGGAATCCAGAACCAGAGGGACCCTTGCTTCGTGCGGGAAGAGGGCCTCGCCCGGGCGGATAGTCCGGGTAGC
CGAGACGCCACCCAAGTGCAATGGGACGGGCCTGGCGACCCTGCGAATCCGAAGTGCTGGCCCATCAAGGGAAAA
TGGTCGGCCGTCTTCTGCGCGAGCCTTCGTCCTGTCTATCTTTGTCCTCGCATTCGCCCTGGGGCCCTTGGTCTG
GGGCCCCCTCTCGGAGCTACACGGGGCGTCATCATTATTCAGATATCCAACGTCGTCTTCCTCCTTTTCAACCTC
GGCTGCGGCCTGGCCCGTACCGAGGGCCAGATGATCGCCTTTAGGTTCTTGGCCGGCATCGGCGGTTCTGCACCT
CTAGCTATCGGAGGCGGCCTCCCTAGCGATCTCTTCTCCGACGAGGGGCGTGGCCGGGTCATGTCGCTCTACATG
ATGTTCCTATACGGCATGATCTACGTCCACTCTCTGGGCGACCAAGTACCACGAGTCGCCGGGCATTCAGGGCTT
TAA
Transcript >Hirsu2|991
ATGGTCAAGGACGAGCACAGCTGGGTGCAATTCGGGTCCACCGAGGCTACGTCCAACACCCAAGTCGGCTCGATA
AACTCGGAGAAGGAGGAGCACGAGAAGCCGGCGAGCTTGGCCGACTGGGAGGCAGGCAGCGATGATGCGCCGGCT
CATGGGGACTCTAGGCGTTGTGTCGGATCGGTTCGCTCCGGCAAGACCCTGTCGAGGAGCGTCTCGGAAGTCGGG
AACGGAATCCAGAACCAGAGGGACCCTTGCTTCGTGCGGGAAGAGGGCCTCGCCCGGGCGGATAGTCCGGGTAGC
CGAGACGCCACCCAAGTGCAATGGGACGGGCCTGGCGACCCTGCGAATCCGAAGTGCTGGCCCATCAAGGGAAAA
TGGTCGGCCGTCTTCTGCGCGAGCCTTCGTCCTGTCTATCTTTGTCCTCGCATTCGCCCTGGGGCCCTTGGTCTG
GGGCCCCCTCTCGGAGCTACACGGGGCGTCATCATTATTCAGATATCCAACGTCGTCTTCCTCCTTTTCAACCTC
GGCTGCGGCCTGGCCCGTACCGAGGGCCAGATGATCGCCTTTAGGTTCTTGGCCGGCATCGGCGGTTCTGCACCT
CTAGCTATCGGAGGCGGCCTCCCTAGCGATCTCTTCTCCGACGAGGGGCGTGGCCGGGTCATGTCGCTCTACATG
ATGTTCCTATACGGCATGATCTACGTCCACTCTCTGGGCGACCAAGTACCACGAGTCGCCGGGCATTCAGGGCTT
TAA
Gene >Hirsu2|991
ATGGTCAAGGACGAGCACAGCTGGGTGCAATTCGGGTCCACCGAGGCTACGTCCAACACCCAAGTCGGCTCGATA
AACTCGGAGAAGGAGGAGCACGAGAAGCCGGCGAGCTTGGCCGACTGGGAGGCAGGCAGCGATGATGCGCCGGCT
CATGGGGACTCTAGGCGTTGTGTCGGATCGGTTCGCTCCGGCAAGACCCTGTCGAGGAGCGTCTCGGAAGTCGGG
AACGGAATCCAGAACCAGAGGGACCCTTGCTTCGTGCGGGAAGAGGGCCTCGCCCGGGCGGATAGTCCGGGTAGC
CGAGACGCCACCCAAGTGCAATGGGACGGGCCTGGCGACCCTGCGAATCCGAAGTGCTGGCCCATCAAGGGAAAA
TGGTCGGCCGTCTTCTGCGGTAGGTGCTTGGCGTCTCACTATGCGCCGGCCTCGCTCGGGGAGAAAAGGGTGACT
TGAAGCTGACCTACCTGCATGGGGGCTCTGGCCGGCTACCTCAAGTGTCCTTCACTCTCATATCCCCCATGGCAT
CATCCATGGTGGCCCCTGCCCTCGAGAAAATCGGATAGGACCTGGAAATTGACAGTGATCTGGAGCGAGCCTTCG
TCCTGTCTATCTTTGTCCTCGCATTCGCCCTGGGGCCCTTGGTCTGGGGCCCCCTCTCGGAGCTACACGGGGCGT
CATCATTATTCAGATATCCAACGTCGTCTTCCTCCTTTTCAACCTCGGCTGCGGCCTGGCCCGTACCGAGGGCCA
GATGATCGCCTTTAGGTTCTTGGCCGGCATCGGCGGTTCTGCACCTCTAGCTATCGGAGGCGGCCTCCCTAGCGA
TCTCTTCTCCGACGAGGGGCGTGGCCGGGTCATGTCGCTCTACATGATGTTCCTATACGGCATGATCTACGTCCA
CTCTCTGGGCGACCAAGTACCACGAGTCGCCGGGCATTCAGGGCTTTAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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