© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9907 |
| Gene name | |
| Location | Contig_757:98..1279 |
| Strand | + |
| Gene length (bp) | 1181 |
| Transcript length (bp) | 1077 |
| Coding sequence length (bp) | 1077 |
| Protein length (aa) | 359 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00134 | Cyclin_N | Cyclin, N-terminal domain | 6.3E-10 | 28 | 148 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 1 | 335 | 1.0E-60 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 7 | 254 | 1.0E-28 |
| sp|Q9FKE6|CCT15_ARATH | Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 | 4 | 246 | 2.0E-28 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 7 | 246 | 4.0E-28 |
| sp|Q8GYM6|CCT14_ARATH | Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 | 6 | 246 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 1 | 335 | 1.0E-60 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 7 | 254 | 1.0E-28 |
| sp|Q9FKE6|CCT15_ARATH | Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 | 4 | 246 | 2.0E-28 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 7 | 246 | 4.0E-28 |
| sp|Q8GYM6|CCT14_ARATH | Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 | 6 | 246 | 1.0E-27 |
| sp|Q9AS36|CCL11_ORYSJ | Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 | 4 | 312 | 2.0E-26 |
| sp|O88874|CCNK_MOUSE | Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 | 7 | 258 | 2.0E-26 |
| sp|O75909|CCNK_HUMAN | Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 | 7 | 223 | 1.0E-25 |
| sp|Q5BKF8|CCNL2_XENTR | Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 | 1 | 230 | 5.0E-24 |
| sp|Q7ZVX0|CCNL1_DANRE | Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 | 2 | 251 | 1.0E-22 |
| sp|Q6T8E9|CCNT1_BOVIN | Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1 | 6 | 227 | 3.0E-22 |
| sp|Q9XT26|CCNT1_HORSE | Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 | 6 | 227 | 3.0E-22 |
| sp|Q9QWV9|CCNT1_MOUSE | Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 | 6 | 227 | 3.0E-22 |
| sp|Q8RWV3|CCL11_ARATH | Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2 | 4 | 244 | 4.0E-22 |
| sp|Q6Z7H3|CCT12_ORYSJ | Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 | 7 | 259 | 5.0E-22 |
| sp|O60563|CCNT1_HUMAN | Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 | 6 | 227 | 5.0E-22 |
| sp|Q8HXN7|CCNT1_PANTR | Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 | 6 | 227 | 5.0E-22 |
| sp|Q9JJA7|CCNL2_MOUSE | Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 | 4 | 347 | 5.0E-22 |
| sp|Q5I0H5|CCNL2_RAT | Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=1 SV=2 | 4 | 284 | 1.0E-21 |
| sp|Q5ZJP9|CCNL1_CHICK | Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 | 17 | 324 | 1.0E-21 |
| sp|O60583|CCNT2_HUMAN | Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2 | 5 | 226 | 2.0E-21 |
| sp|Q6GN15|CCNL1_XENLA | Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 | 17 | 330 | 2.0E-21 |
| sp|Q0E474|CCT11_ORYSJ | Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 | 7 | 262 | 9.0E-21 |
| sp|Q96S94|CCNL2_HUMAN | Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 | 4 | 206 | 2.0E-20 |
| sp|Q56YF8|CCT12_ARATH | Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 | 7 | 190 | 5.0E-20 |
| sp|Q52KE7|CCNL1_MOUSE | Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 | 4 | 206 | 7.0E-20 |
| sp|Q9R1Q2|CCNL1_RAT | Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1 | 17 | 206 | 7.0E-20 |
| sp|Q9UK58|CCNL1_HUMAN | Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1 | 4 | 206 | 8.0E-20 |
| sp|Q8LBC0|CCT13_ARATH | Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 | 5 | 222 | 5.0E-17 |
| sp|Q8N1B3|FA58A_HUMAN | Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2 | 22 | 228 | 1.0E-16 |
| sp|Q9C8P7|CCT11_ARATH | Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 | 1 | 246 | 2.0E-16 |
| sp|Q6NRK9|FA58A_XENLA | Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2 | 35 | 205 | 1.0E-14 |
| sp|Q8QZR8|FA58B_MOUSE | Cyclin-related protein FAM58B OS=Mus musculus GN=Fam58b PE=2 SV=2 | 26 | 226 | 3.0E-14 |
| sp|Q4QQW5|FA58A_RAT | Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2 SV=1 | 39 | 223 | 1.0E-13 |
| sp|O96433|CCNT_DROME | Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2 | 7 | 245 | 5.0E-13 |
| sp|Q503D6|FA58A_DANRE | Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1 | 35 | 178 | 6.0E-12 |
| sp|Q5RD50|CCNL1_PONAB | Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1 | 4 | 116 | 3.0E-10 |
| sp|P93411|CCC11_ORYSJ | Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1 | 23 | 213 | 9.0E-10 |
| sp|P34425|CCNT1_CAEEL | Cyclin-T1.1 OS=Caenorhabditis elegans GN=cit-1.1 PE=3 SV=1 | 6 | 222 | 1.0E-09 |
| sp|Q9FJK6|CCC11_ARATH | Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2 | 23 | 213 | 8.0E-09 |
| sp|P0C7Q3|FA58B_HUMAN | Putative cyclin-related protein FAM58B OS=Homo sapiens GN=FAM58BP PE=5 SV=1 | 39 | 205 | 8.0E-09 |
| sp|Q16JA2|CCNC_AEDAE | Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1 | 38 | 231 | 3.0E-08 |
| sp|Q7QB13|CCNC_ANOGA | Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2 | 38 | 231 | 7.0E-08 |
| sp|P39947|CCNC_RAT | Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2 | 38 | 245 | 8.0E-08 |
| sp|P24863|CCNC_HUMAN | Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2 | 38 | 245 | 2.0E-07 |
| sp|Q3ZCK5|CCNC_BOVIN | Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1 | 38 | 245 | 2.0E-07 |
| sp|P55168|CCNC_CHICK | Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1 | 38 | 245 | 3.0E-07 |
| sp|Q29AI1|CCNC_DROPS | Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1 | 38 | 243 | 5.0E-07 |
| sp|Q4KLA0|CCNC_XENLA | Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1 | 38 | 245 | 7.0E-07 |
| sp|A4RD79|SSN8_MAGO7 | RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SSN8 PE=3 SV=1 | 7 | 207 | 7.0E-07 |
| sp|Q28F72|CCNC_XENTR | Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1 | 38 | 245 | 8.0E-07 |
| sp|P51947|CCNH_XENLA | Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1 | 49 | 203 | 9.0E-07 |
| sp|P25008|CCNC_DROME | Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1 | 38 | 243 | 1.0E-06 |
| sp|O59748|CTK2_SCHPO | CTD kinase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsc1 PE=1 SV=2 | 4 | 206 | 2.0E-06 |
| sp|O94612|YFO5_SCHPO | Uncharacterized cyclin-L1-like protein C1296.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1296.05c PE=3 SV=1 | 36 | 255 | 7.0E-06 |
| sp|Q3ZBL9|CCNH_BOVIN | Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1 | 49 | 203 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 61 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9907 MPPLNQWFFTSDEVHSTPSIVDGIPPSEERLRRAKGVNFIYQAGVMLDLPQITLWVAGVFFHRFFMRFSMVQEKG GIHHYNIAATALFLANKVEENCRKTKDIIIAVAKVAQKNAKLVIDEQSKEYWRWRDGILTYEEIMLEQLTFDLMI DNPYRHLFELLGQLDIVHNKHLRQAAWAFCNDACLTALPLLIEARDVAISAIFFASVHTNQQIDDISGDPWWKYL NGEEERCTRAIEVMRQFYTENPLRKQNPSLPSPAFDLENTRRRADTLLSQPETLSSTGGTPMDIDRASRSPAVRV NGGTDNAGEAKDGAADRADSGPRSPGKRKEVETDGHSAQERAEKRARLSEDEGELVED* |
| Coding | >Hirsu2|9907 ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC GGCATCCACCACTACAACATCGCTGCCACCGCGCTATTCCTAGCGAACAAGGTCGAGGAGAACTGCAGGAAAACC AAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGAAACTCGTGATTGACGAGCAGAGTAAGGAG TATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGTTGGAGCAATTAACCTTCGACCTCATGATC GACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACATAGTACACAACAAGCACCTGAGGCAGGCG GCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGCTCATTGAGGCGAGGGACGTGGCCATCAGC GCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACATCAGCGGCGACCCGTGGTGGAAGTACCTC AACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGCAGTTCTACACGGAAAACCCACTGAGGAAG CAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCAGGCGCCGGGCCGACACACTGCTGAGCCAG CCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATAGGGCCAGCCGCAGCCCGGCCGTGAGGGTC AACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGGACCGCGCCGACAGCGGCCCTCGATCGCCG GGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGAGGGCCGAAAAGCGGGCAAGGCTCTCGGAG GATGAGGGCGAGCTGGTGGAGGATTGA |
| Transcript | >Hirsu2|9907 ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC GGCATCCACCACTACAACATCGCTGCCACCGCGCTATTCCTAGCGAACAAGGTCGAGGAGAACTGCAGGAAAACC AAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGAAACTCGTGATTGACGAGCAGAGTAAGGAG TATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGTTGGAGCAATTAACCTTCGACCTCATGATC GACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACATAGTACACAACAAGCACCTGAGGCAGGCG GCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGCTCATTGAGGCGAGGGACGTGGCCATCAGC GCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACATCAGCGGCGACCCGTGGTGGAAGTACCTC AACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGCAGTTCTACACGGAAAACCCACTGAGGAAG CAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCAGGCGCCGGGCCGACACACTGCTGAGCCAG CCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATAGGGCCAGCCGCAGCCCGGCCGTGAGGGTC AACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGGACCGCGCCGACAGCGGCCCTCGATCGCCG GGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGAGGGCCGAAAAGCGGGCAAGGCTCTCGGAG GATGAGGGCGAGCTGGTGGAGGATTGA |
| Gene | >Hirsu2|9907 ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC GGCATCCACCACTACGTTCGTGTCCTTCTGAAATCCCGCGCCCAACGTCTCTCTCCCATCATCTCTCGCCGCCCG GCTTCCGTTTCTGCTCTCGGCCCGCTAATATCCTCCCCCCACAGAACATCGCTGCCACCGCGCTATTCCTAGCGA ACAAGGTCGAGGAGAACTGCAGGAAAACCAAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGA AACTCGTGATTGACGAGCAGAGTAAGGAGTATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGT TGGAGCAATTAACCTTCGACCTCATGATCGACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACA TAGTACACAACAAGCACCTGAGGCAGGCGGCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGC TCATTGAGGCGAGGGACGTGGCCATCAGCGCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACA TCAGCGGCGACCCGTGGTGGAAGTACCTCAACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGC AGTTCTACACGGAAAACCCACTGAGGAAGCAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCA GGCGCCGGGCCGACACACTGCTGAGCCAGCCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATA GGGCCAGCCGCAGCCCGGCCGTGAGGGTCAACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGG ACCGCGCCGACAGCGGCCCTCGATCGCCGGGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGA GGGCCGAAAAGCGGGCAAGGCTCTCGGAGGATGAGGGCGAGCTGGTGGAGGATTGA |