Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9907
Gene name
LocationContig_757:98..1279
Strand+
Gene length (bp)1181
Transcript length (bp)1077
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00134 Cyclin_N Cyclin, N-terminal domain 5.8E-10 28 148

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 1 335 1.0E-60
sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 7 254 1.0E-28
sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 4 246 2.0E-28
sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 7 246 4.0E-28
sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 6 246 1.0E-27
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Swissprot ID Swissprot Description Start End E-value
sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 1 335 1.0E-60
sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 7 254 1.0E-28
sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 4 246 2.0E-28
sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 7 246 4.0E-28
sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 6 246 1.0E-27
sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 4 312 2.0E-26
sp|O88874|CCNK_MOUSE Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 7 258 2.0E-26
sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 7 223 1.0E-25
sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 1 230 5.0E-24
sp|Q7ZVX0|CCNL1_DANRE Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 2 251 1.0E-22
sp|Q6T8E9|CCNT1_BOVIN Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1 6 227 3.0E-22
sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 6 227 3.0E-22
sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 6 227 3.0E-22
sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2 4 244 4.0E-22
sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 4 347 5.0E-22
sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 7 259 5.0E-22
sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 6 227 5.0E-22
sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 6 227 5.0E-22
sp|Q5I0H5|CCNL2_RAT Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=1 SV=2 4 284 1.0E-21
sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 17 324 1.0E-21
sp|O60583|CCNT2_HUMAN Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2 5 226 2.0E-21
sp|Q6GN15|CCNL1_XENLA Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 17 330 2.0E-21
sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 7 262 9.0E-21
sp|Q96S94|CCNL2_HUMAN Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 4 206 2.0E-20
sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 7 190 5.0E-20
sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 4 206 7.0E-20
sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1 17 206 7.0E-20
sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1 4 206 8.0E-20
sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 5 222 5.0E-17
sp|Q8N1B3|FA58A_HUMAN Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2 22 228 1.0E-16
sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 1 246 2.0E-16
sp|Q6NRK9|FA58A_XENLA Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2 35 205 1.0E-14
sp|Q8QZR8|FA58B_MOUSE Cyclin-related protein FAM58B OS=Mus musculus GN=Fam58b PE=2 SV=2 26 226 3.0E-14
sp|Q4QQW5|FA58A_RAT Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2 SV=1 39 223 1.0E-13
sp|O96433|CCNT_DROME Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2 7 245 5.0E-13
sp|Q503D6|FA58A_DANRE Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1 35 178 6.0E-12
sp|Q5RD50|CCNL1_PONAB Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1 4 116 3.0E-10
sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1 23 213 9.0E-10
sp|P34425|CCNT1_CAEEL Cyclin-T1.1 OS=Caenorhabditis elegans GN=cit-1.1 PE=3 SV=1 6 222 1.0E-09
sp|P0C7Q3|FA58B_HUMAN Putative cyclin-related protein FAM58B OS=Homo sapiens GN=FAM58BP PE=5 SV=1 39 205 8.0E-09
sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2 23 213 8.0E-09
sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1 38 231 3.0E-08
sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2 38 231 7.0E-08
sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2 38 245 8.0E-08
sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2 38 245 2.0E-07
sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1 38 245 2.0E-07
sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1 38 245 3.0E-07
sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1 38 243 5.0E-07
sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1 38 245 7.0E-07
sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SSN8 PE=3 SV=1 7 207 7.0E-07
sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1 38 245 8.0E-07
sp|P51947|CCNH_XENLA Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1 49 203 9.0E-07
sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1 38 243 1.0E-06
sp|O59748|CTK2_SCHPO CTD kinase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsc1 PE=1 SV=2 4 206 2.0E-06
sp|O94612|YFO5_SCHPO Uncharacterized cyclin-L1-like protein C1296.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1296.05c PE=3 SV=1 36 255 7.0E-06
sp|Q3ZBL9|CCNH_BOVIN Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1 49 203 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 39 61 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9907
MPPLNQWFFTSDEVHSTPSIVDGIPPSEERLRRAKGVNFIYQAGVMLDLPQITLWVAGVFFHRFFMRFSMVQEKG
GIHHYNIAATALFLANKVEENCRKTKDIIIAVAKVAQKNAKLVIDEQSKEYWRWRDGILTYEEIMLEQLTFDLMI
DNPYRHLFELLGQLDIVHNKHLRQAAWAFCNDACLTALPLLIEARDVAISAIFFASVHTNQQIDDISGDPWWKYL
NGEEERCTRAIEVMRQFYTENPLRKQNPSLPSPAFDLENTRRRADTLLSQPETLSSTGGTPMDIDRASRSPAVRV
NGGTDNAGEAKDGAADRADSGPRSPGKRKEVETDGHSAQERAEKRARLSEDEGELVED*
Coding >Hirsu2|9907
ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC
CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG
CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC
GGCATCCACCACTACAACATCGCTGCCACCGCGCTATTCCTAGCGAACAAGGTCGAGGAGAACTGCAGGAAAACC
AAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGAAACTCGTGATTGACGAGCAGAGTAAGGAG
TATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGTTGGAGCAATTAACCTTCGACCTCATGATC
GACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACATAGTACACAACAAGCACCTGAGGCAGGCG
GCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGCTCATTGAGGCGAGGGACGTGGCCATCAGC
GCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACATCAGCGGCGACCCGTGGTGGAAGTACCTC
AACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGCAGTTCTACACGGAAAACCCACTGAGGAAG
CAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCAGGCGCCGGGCCGACACACTGCTGAGCCAG
CCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATAGGGCCAGCCGCAGCCCGGCCGTGAGGGTC
AACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGGACCGCGCCGACAGCGGCCCTCGATCGCCG
GGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGAGGGCCGAAAAGCGGGCAAGGCTCTCGGAG
GATGAGGGCGAGCTGGTGGAGGATTGA
Transcript >Hirsu2|9907
ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC
CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG
CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC
GGCATCCACCACTACAACATCGCTGCCACCGCGCTATTCCTAGCGAACAAGGTCGAGGAGAACTGCAGGAAAACC
AAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGAAACTCGTGATTGACGAGCAGAGTAAGGAG
TATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGTTGGAGCAATTAACCTTCGACCTCATGATC
GACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACATAGTACACAACAAGCACCTGAGGCAGGCG
GCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGCTCATTGAGGCGAGGGACGTGGCCATCAGC
GCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACATCAGCGGCGACCCGTGGTGGAAGTACCTC
AACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGCAGTTCTACACGGAAAACCCACTGAGGAAG
CAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCAGGCGCCGGGCCGACACACTGCTGAGCCAG
CCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATAGGGCCAGCCGCAGCCCGGCCGTGAGGGTC
AACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGGACCGCGCCGACAGCGGCCCTCGATCGCCG
GGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGAGGGCCGAAAAGCGGGCAAGGCTCTCGGAG
GATGAGGGCGAGCTGGTGGAGGATTGA
Gene >Hirsu2|9907
ATGCCGCCGCTGAACCAGTGGTTCTTCACCTCGGACGAGGTCCACAGCACCCCGAGCATCGTCGACGGCATTCCC
CCGTCCGAAGAGCGGCTCCGGAGAGCCAAGGGCGTCAACTTCATCTACCAGGCTGGCGTCATGCTCGACCTGCCG
CAGATCACCCTCTGGGTCGCCGGCGTTTTCTTCCACAGGTTCTTCATGCGCTTCAGCATGGTGCAGGAGAAGGGC
GGCATCCACCACTACGTTCGTGTCCTTCTGAAATCCCGCGCCCAACGTCTCTCTCCCATCATCTCTCGCCGCCCG
GCTTCCGTTTCTGCTCTCGGCCCGCTAATATCCTCCCCCCACAGAACATCGCTGCCACCGCGCTATTCCTAGCGA
ACAAGGTCGAGGAGAACTGCAGGAAAACCAAAGACATCATCATCGCGGTCGCCAAGGTGGCTCAGAAGAACGCGA
AACTCGTGATTGACGAGCAGAGTAAGGAGTATTGGCGCTGGAGAGACGGCATCCTCACCTACGAAGAGATCATGT
TGGAGCAATTAACCTTCGACCTCATGATCGACAACCCGTACCGTCACCTTTTCGAGCTACTCGGGCAGCTGGACA
TAGTACACAACAAGCACCTGAGGCAGGCGGCGTGGGCGTTCTGCAACGACGCCTGCCTGACGGCGCTCCCGCTGC
TCATTGAGGCGAGGGACGTGGCCATCAGCGCCATCTTCTTCGCGAGCGTCCACACGAATCAGCAGATCGACGACA
TCAGCGGCGACCCGTGGTGGAAGTACCTCAACGGAGAAGAAGAGCGGTGCACGAGGGCCATCGAGGTGATGCGGC
AGTTCTACACGGAAAACCCACTGAGGAAGCAGAATCCGTCTCTGCCGTCTCCCGCCTTCGACCTGGAGAATACCA
GGCGCCGGGCCGACACACTGCTGAGCCAGCCGGAAACGCTTTCGTCCACGGGCGGGACGCCGATGGACATCGATA
GGGCCAGCCGCAGCCCGGCCGTGAGGGTCAACGGCGGCACCGACAACGCGGGCGAGGCCAAGGACGGCGCTGCGG
ACCGCGCCGACAGCGGCCCTCGATCGCCGGGCAAGAGGAAAGAGGTCGAGACGGACGGCCACTCGGCGCAGGAGA
GGGCCGAAAAGCGGGCAAGGCTCTCGGAGGATGAGGGCGAGCTGGTGGAGGATTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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